Wall clock time and date at job start Mon Mar 30 2020 01:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42891 * 114.00157 * 2 1 4 4 C 1.53000 * 109.47454 * 180.02562 * 3 2 1 5 5 H 1.09008 * 110.53480 * 303.63060 * 4 3 2 6 6 N 1.47313 * 110.59612 * 66.45311 * 4 3 2 7 7 C 1.34526 * 106.61528 * 118.68565 * 6 4 3 8 8 O 1.21543 * 123.77210 * 179.97438 * 7 6 4 9 9 N 1.33786 * 112.46195 * 0.02562 * 7 6 4 10 10 C 1.46503 * 124.18278 * 179.97438 * 9 7 6 11 11 C 1.52996 * 109.47323 * 90.01942 * 10 9 7 12 12 C 1.52996 * 109.47170 * 60.00308 * 11 10 9 13 13 C 1.53004 * 109.47189 * 300.00346 * 11 10 9 14 14 C 1.50703 * 109.47239 * 180.02562 * 11 10 9 15 15 H 1.07997 * 119.99854 * 4.65696 * 14 11 10 16 16 C 1.37873 * 119.99919 * 184.65239 * 14 11 10 17 17 N 1.31519 * 119.99314 * 152.43232 * 16 14 11 18 18 Si 1.86797 * 120.00486 * 332.16123 * 16 14 11 19 19 H 1.48496 * 109.47356 * 180.27071 * 18 16 14 20 20 H 1.48500 * 109.46865 * 300.27489 * 18 16 14 21 21 H 1.48509 * 109.46946 * 60.27284 * 18 16 14 22 22 C 1.34773 * 111.64308 * 0.22724 * 9 7 6 23 23 O 1.21235 * 127.15885 * 179.73738 * 22 9 7 24 24 H 1.08995 * 109.47392 * 59.99183 * 1 2 3 25 25 H 1.08999 * 109.47804 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47105 * 299.99670 * 1 2 3 27 27 H 1.09008 * 109.47177 * 60.00240 * 3 2 1 28 28 H 1.09001 * 109.47798 * 300.00466 * 3 2 1 29 29 H 0.97001 * 126.69367 * 298.64552 * 6 4 3 30 30 H 1.09001 * 109.46573 * 330.01826 * 10 9 7 31 31 H 1.09001 * 109.47376 * 210.02264 * 10 9 7 32 32 H 1.08997 * 109.47504 * 172.23023 * 12 11 10 33 33 H 1.08996 * 109.47150 * 292.23007 * 12 11 10 34 34 H 1.09002 * 109.47277 * 52.23287 * 12 11 10 35 35 H 1.09002 * 109.46782 * 293.00108 * 13 11 10 36 36 H 1.08997 * 109.47027 * 53.00570 * 13 11 10 37 37 H 1.08998 * 109.46892 * 173.00370 * 13 11 10 38 38 H 0.96998 * 120.00782 * 354.58368 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 1 3.8723 0.5907 0.8491 6 7 4.0080 0.5947 -1.2651 7 6 4.7974 1.5152 -1.8476 8 8 5.3556 1.3489 -2.9144 9 7 4.9004 2.6338 -1.1209 10 6 5.6952 3.8002 -1.5136 11 6 4.8270 4.7562 -2.3340 12 6 3.6342 5.2122 -1.4913 13 6 4.3215 4.0382 -3.5870 14 6 5.6447 5.9557 -2.7384 15 1 6.6985 5.9943 -2.5053 16 6 5.0475 7.0038 -3.4061 17 7 5.5375 8.2192 -3.2942 18 14 3.5472 6.6964 -4.4757 19 1 3.1026 7.9758 -5.0843 20 1 3.8944 5.7315 -5.5497 21 1 2.4519 6.1374 -3.6430 22 6 4.1870 2.5530 0.0196 23 8 4.0859 3.3996 0.8816 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3635 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6886 1.8463 0.8901 28 1 1.6886 1.8464 -0.8899 29 1 3.7926 -0.2859 -1.6101 30 1 6.5450 3.4753 -2.1139 31 1 6.0553 4.3117 -0.6210 32 1 3.0930 5.9957 -2.0217 33 1 2.9693 4.3667 -1.3153 34 1 3.9905 5.5992 -0.5366 35 1 5.1622 3.8235 -4.2467 36 1 3.8368 3.1049 -3.3003 37 1 3.6053 4.6748 -4.1065 38 1 6.2693 8.3927 -2.6817 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000927722316.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:43 Heat of formation + Delta-G solvation = -100.930794 kcal Electronic energy + Delta-G solvation = -22301.429736 eV Core-core repulsion = 18951.778884 eV Total energy + Delta-G solvation = -3349.650851 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.58270 -39.71130 -39.08677 -38.21729 -37.13084 -35.22252 -33.56496 -30.90269 -28.52178 -28.13271 -27.30280 -26.51333 -25.13657 -23.34260 -22.23484 -20.62625 -19.06655 -18.92558 -18.38419 -17.73745 -17.30897 -16.88683 -16.58928 -16.48125 -16.04365 -15.88923 -15.29911 -15.15340 -14.82799 -14.62142 -14.50371 -14.08626 -13.65344 -13.45845 -13.10850 -12.89987 -12.73503 -12.37397 -12.23854 -11.97370 -11.93848 -11.74706 -11.31800 -11.17771 -11.02564 -10.74025 -10.56198 -10.38592 -10.31627 -8.76172 -6.32727 0.50566 1.17519 1.38573 1.46767 1.68803 1.95978 2.08067 2.43727 2.60034 2.97180 3.08301 3.65392 3.81933 3.99548 4.06278 4.27681 4.34397 4.42948 4.45067 4.48769 4.59987 4.61317 4.67826 4.74786 4.78496 4.84320 4.91557 4.95871 5.17766 5.38288 5.66523 5.83626 6.01196 6.02408 6.08305 6.11392 6.34478 6.58181 7.12141 7.36774 8.59620 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.023515 B = 0.006253 C = 0.005989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.444683 B = 4477.110948 C = 4674.290849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.394 6.394 3 C 0.068 3.932 4 C 0.108 3.892 5 H 0.167 0.833 6 N -0.700 5.700 7 C 0.697 3.303 8 O -0.571 6.571 9 N -0.573 5.573 10 C 0.149 3.851 11 C 0.026 3.974 12 C -0.126 4.126 13 C -0.133 4.133 14 C -0.604 4.604 15 H 0.030 0.970 16 C 0.002 3.998 17 N -0.923 5.923 18 Si 1.077 2.923 19 H -0.304 1.304 20 H -0.273 1.273 21 H -0.249 1.249 22 C 0.522 3.478 23 O -0.484 6.484 24 H 0.044 0.956 25 H 0.105 0.895 26 H 0.054 0.946 27 H 0.089 0.911 28 H 0.055 0.945 29 H 0.453 0.547 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.042 0.958 33 H 0.037 0.963 34 H 0.040 0.960 35 H 0.042 0.958 36 H 0.043 0.957 37 H 0.035 0.965 38 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.985 -18.928 8.492 23.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.313 6.313 3 C -0.010 4.010 4 C 0.000 4.000 5 H 0.184 0.816 6 N -0.366 5.366 7 C 0.397 3.603 8 O -0.447 6.447 9 N -0.318 5.318 10 C 0.028 3.972 11 C 0.024 3.976 12 C -0.183 4.183 13 C -0.190 4.190 14 C -0.642 4.642 15 H 0.049 0.951 16 C -0.199 4.199 17 N -0.556 5.556 18 Si 0.905 3.095 19 H -0.233 1.233 20 H -0.200 1.200 21 H -0.174 1.174 22 C 0.310 3.690 23 O -0.355 6.355 24 H 0.063 0.937 25 H 0.124 0.876 26 H 0.073 0.927 27 H 0.107 0.893 28 H 0.073 0.927 29 H 0.300 0.700 30 H 0.097 0.903 31 H 0.100 0.900 32 H 0.061 0.939 33 H 0.056 0.944 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.054 0.946 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -11.604 -17.906 7.368 22.573 hybrid contribution 1.451 -0.259 0.740 1.649 sum -10.153 -18.165 8.108 22.333 Atomic orbital electron populations 1.22986 0.78715 1.04345 1.01013 1.87781 1.21852 1.26028 1.95682 1.22497 0.89189 0.86408 1.02924 1.22077 0.95566 0.91519 0.90861 0.81606 1.45404 1.50267 1.18717 1.22222 1.16025 0.80427 0.80590 0.83209 1.90999 1.51930 1.80208 1.21553 1.46533 1.46707 1.16934 1.21621 1.21595 0.93165 0.82797 0.99604 1.18754 0.93635 0.92957 0.92260 1.22040 0.97557 0.99233 0.99483 1.22175 0.99662 0.98157 0.98979 1.21783 0.95691 1.03647 1.43063 0.95136 1.26748 1.04010 0.91552 0.97615 1.70946 1.25915 1.21374 1.37410 0.83901 0.74968 0.74149 0.76515 1.23258 1.19960 1.17435 1.21023 0.78360 0.89079 0.80545 1.90806 1.60332 1.45414 1.38915 0.93692 0.87621 0.92690 0.89271 0.92665 0.69971 0.90309 0.89975 0.93883 0.94427 0.94047 0.93878 0.93804 0.94638 0.93132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 113.37 1.25 1.51 16 2 O -0.39 -5.93 10.69 -148.98 -1.59 -7.52 16 3 C 0.07 1.14 5.68 71.98 0.41 1.55 16 4 C 0.11 2.04 3.96 44.37 0.18 2.21 16 5 H 0.17 2.10 8.14 -2.38 -0.02 2.08 16 6 N -0.70 -14.66 6.23 -459.60 -2.86 -17.52 16 7 C 0.70 21.80 6.99 179.44 1.25 23.05 16 8 O -0.57 -22.10 16.24 -3.85 -0.06 -22.16 16 9 N -0.57 -19.09 2.14 -773.12 -1.66 -20.75 16 10 C 0.15 6.09 4.67 86.38 0.40 6.50 16 11 C 0.03 1.20 0.57 -52.93 -0.03 1.17 16 12 C -0.13 -5.52 6.94 71.98 0.50 -5.02 16 13 C -0.13 -5.91 6.72 71.98 0.48 -5.43 16 14 C -0.60 -33.78 8.42 25.60 0.22 -33.57 16 15 H 0.03 1.85 7.99 -2.91 -0.02 1.82 16 16 C 0.00 0.13 5.07 84.65 0.43 0.56 16 17 N -0.92 -57.24 13.69 21.45 0.29 -56.95 16 18 Si 1.08 51.79 23.32 68.60 1.60 53.38 16 19 H -0.30 -14.84 7.11 99.48 0.71 -14.13 16 20 H -0.27 -12.47 6.77 99.48 0.67 -11.79 16 21 H -0.25 -10.69 5.66 99.48 0.56 -10.12 16 22 C 0.52 14.93 6.16 87.94 0.54 15.47 16 23 O -0.48 -16.23 16.79 -2.89 -0.05 -16.28 16 24 H 0.04 0.48 8.14 -2.39 -0.02 0.46 16 25 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 27 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 28 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.45 7.25 8.96 -92.71 -0.83 6.42 16 30 H 0.08 3.33 7.86 -2.39 -0.02 3.31 16 31 H 0.08 3.39 8.00 -2.39 -0.02 3.37 16 32 H 0.04 1.97 4.44 -2.39 -0.01 1.96 16 33 H 0.04 1.43 6.87 -2.39 -0.02 1.41 16 34 H 0.04 1.86 7.84 -2.39 -0.02 1.85 16 35 H 0.04 2.01 8.13 -2.39 -0.02 1.99 16 36 H 0.04 1.76 5.57 -2.39 -0.01 1.74 16 37 H 0.04 1.57 2.84 -2.39 -0.01 1.57 16 38 H 0.26 16.18 8.73 -92.71 -0.81 15.37 16 Total: -1.00 -70.33 300.93 1.34 -68.99 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: 0.04 Total: 10.83 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: 5.63 Total: 7.99 kcal Atomic # 7 Polarization: -91.00 SS G_CDS: -4.23 Total: -95.22 kcal Atomic # 8 Polarization: -44.26 SS G_CDS: -1.70 Total: -45.96 kcal Atomic # 14 Polarization: 51.79 SS G_CDS: 1.60 Total: 53.38 kcal Total: -70.33 1.34 -68.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000927722316.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.946 kcal (2) G-P(sol) polarization free energy of solvation -70.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds