Wall clock time and date at job start Mon Mar 30 2020 00:57:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 110.36659 * 2 1 4 4 C 1.54370 * 110.32328 * 122.17211 * 2 1 3 5 5 C 1.54470 * 103.04331 * 136.72171 * 4 2 1 6 6 C 1.53009 * 110.40134 * 241.47086 * 5 4 2 7 7 N 1.46895 * 110.40957 * 119.16649 * 5 4 2 8 8 C 1.46893 * 111.00318 * 181.63142 * 7 5 4 9 9 C 1.50708 * 109.47146 * 179.97438 * 8 7 5 10 10 O 1.21288 * 119.99815 * 359.97438 * 9 8 7 11 11 N 1.34774 * 119.99719 * 180.02562 * 9 8 7 12 12 C 1.37101 * 119.99349 * 180.02562 * 11 9 8 13 13 H 1.07991 * 120.00515 * 359.97438 * 12 11 9 14 14 C 1.38955 * 119.99490 * 179.97438 * 12 11 9 15 15 N 1.31413 * 120.00236 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99845 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47174 * 270.00316 * 16 14 12 18 18 H 1.48501 * 109.47062 * 30.00267 * 16 14 12 19 19 H 1.48504 * 109.46913 * 150.00066 * 16 14 12 20 20 C 1.51502 * 104.73346 * 0.31267 * 5 4 2 21 21 O 1.20829 * 125.94466 * 159.64277 * 20 5 4 22 22 O 1.34757 * 108.00789 * 339.77349 * 20 5 4 23 23 H 1.09002 * 109.47410 * 297.82426 * 1 2 3 24 24 H 1.08994 * 109.47294 * 57.82669 * 1 2 3 25 25 H 1.09000 * 109.46734 * 177.82873 * 1 2 3 26 26 H 1.08999 * 109.47097 * 182.17955 * 3 2 1 27 27 H 1.08998 * 109.46624 * 302.17841 * 3 2 1 28 28 H 1.09001 * 109.47253 * 62.17160 * 3 2 1 29 29 H 1.09000 * 110.69988 * 18.33127 * 4 2 1 30 30 H 1.08997 * 110.70407 * 255.11161 * 4 2 1 31 31 H 1.08994 * 109.47315 * 298.36428 * 6 5 4 32 32 H 1.08996 * 109.46883 * 58.36979 * 6 5 4 33 33 H 1.09003 * 109.46990 * 178.36708 * 6 5 4 34 34 H 1.00908 * 110.99391 * 305.58304 * 7 5 4 35 35 H 1.09002 * 109.47091 * 59.99845 * 8 7 5 36 36 H 1.09000 * 109.47343 * 299.99463 * 8 7 5 37 37 H 0.96996 * 120.00564 * 359.97438 * 11 9 8 38 38 H 0.97001 * 119.99781 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0625 1.4344 0.0000 4 6 2.0661 -0.7708 1.2253 5 6 3.2146 -1.6155 0.6306 6 6 2.9274 -3.1076 0.8100 7 7 4.4919 -1.2613 1.2637 8 6 5.5996 -2.0298 0.6804 9 6 6.8906 -1.6397 1.3530 10 8 6.8882 -0.8034 2.2315 11 7 8.0479 -2.2195 0.9777 12 6 9.2223 -1.8650 1.5900 13 1 9.2201 -1.1210 2.3727 14 6 10.4154 -2.4631 1.2033 15 7 10.4181 -3.3689 0.2512 16 14 12.0157 -1.9796 2.0370 17 1 12.6338 -0.8466 1.3026 18 1 11.7401 -1.5702 3.4376 19 1 12.9451 -3.1378 2.0336 20 6 3.2362 -1.2549 -0.8407 21 8 4.1670 -1.4099 -1.5953 22 8 2.0369 -0.7288 -1.1583 23 1 -0.3634 0.4797 0.9088 24 1 -0.3633 0.5472 -0.8698 25 1 -0.3633 -1.0270 -0.0389 26 1 3.1516 1.4176 -0.0391 27 1 1.6758 1.9654 -0.8698 28 1 1.7392 1.9420 0.9088 29 1 1.2923 -1.4136 1.6449 30 1 2.4456 -0.0807 1.9788 31 1 2.8619 -3.3399 1.8729 32 1 1.9838 -3.3568 0.3247 33 1 3.7320 -3.6892 0.3600 34 1 4.6656 -0.2694 1.1973 35 1 5.6674 -1.8169 -0.3864 36 1 5.4201 -3.0948 0.8278 37 1 8.0500 -2.8881 0.2749 38 1 11.2511 -3.7861 -0.0189 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930874352.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:53 Heat of formation + Delta-G solvation = -114.145684 kcal Electronic energy + Delta-G solvation = -21418.921305 eV Core-core repulsion = 18068.697413 eV Total energy + Delta-G solvation = -3350.223892 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.59570 -38.32921 -37.82027 -36.04838 -33.90409 -33.61276 -31.30957 -30.90484 -28.00266 -27.41841 -26.27097 -24.22292 -23.52821 -21.43687 -19.62724 -19.14739 -17.85704 -17.09080 -16.73170 -16.47541 -15.84827 -15.22287 -14.82688 -14.43839 -14.20019 -13.99573 -13.64824 -13.55443 -13.38962 -12.89478 -12.73243 -12.50479 -12.31937 -12.11928 -12.04029 -11.93407 -11.61494 -11.52510 -11.38371 -11.08065 -11.01859 -10.69346 -10.45983 -10.36563 -10.18125 -9.47458 -8.47433 -8.02680 -7.91904 -6.37491 -3.78507 1.80368 3.11943 3.20651 3.28790 3.34713 3.72115 3.94305 4.03844 4.09670 4.27434 4.30462 4.45871 4.61554 4.85684 5.16790 5.19883 5.28601 5.30594 5.34646 5.39342 5.47983 5.50865 5.54441 5.68985 5.75835 5.82726 5.92872 6.05084 6.08475 6.30524 6.61761 6.99229 7.31016 7.48743 7.58748 8.09567 8.64968 9.21152 9.58507 10.09523 10.80230 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.038934 B = 0.004003 C = 0.003924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.992768 B = 6993.296223 C = 7133.511086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.102 3.898 3 C -0.168 4.168 4 C -0.136 4.136 5 C 0.059 3.941 6 C -0.133 4.133 7 N -0.632 5.632 8 C 0.026 3.974 9 C 0.444 3.556 10 O -0.588 6.588 11 N -0.562 5.562 12 C -0.300 4.300 13 H 0.103 0.897 14 C 0.022 3.978 15 N -0.901 5.901 16 Si 0.931 3.069 17 H -0.278 1.278 18 H -0.269 1.269 19 H -0.284 1.284 20 C 0.452 3.548 21 O -0.436 6.436 22 O -0.352 6.352 23 H 0.082 0.918 24 H 0.068 0.932 25 H 0.069 0.931 26 H 0.063 0.937 27 H 0.071 0.929 28 H 0.083 0.917 29 H 0.099 0.901 30 H 0.106 0.894 31 H 0.083 0.917 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.351 0.649 35 H 0.076 0.924 36 H 0.090 0.910 37 H 0.393 0.607 38 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.338 3.611 -0.573 20.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.065 3.935 3 C -0.225 4.225 4 C -0.174 4.174 5 C -0.035 4.035 6 C -0.190 4.190 7 N -0.266 5.266 8 C -0.105 4.105 9 C 0.229 3.771 10 O -0.472 6.472 11 N -0.198 5.198 12 C -0.429 4.429 13 H 0.121 0.879 14 C -0.180 4.180 15 N -0.542 5.542 16 Si 0.758 3.242 17 H -0.204 1.204 18 H -0.194 1.194 19 H -0.209 1.209 20 C 0.289 3.711 21 O -0.317 6.317 22 O -0.270 6.270 23 H 0.100 0.900 24 H 0.087 0.913 25 H 0.088 0.912 26 H 0.082 0.918 27 H 0.090 0.910 28 H 0.102 0.898 29 H 0.118 0.882 30 H 0.124 0.876 31 H 0.102 0.898 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.172 0.828 35 H 0.094 0.906 36 H 0.108 0.892 37 H 0.226 0.774 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -19.909 3.548 -0.105 20.223 hybrid contribution 1.060 0.171 -0.974 1.450 sum -18.849 3.719 -1.079 19.243 Atomic orbital electron populations 1.21862 0.90922 1.03590 1.03375 1.23040 0.95979 0.91762 0.82741 1.22313 1.02125 0.94274 1.03795 1.23110 0.97286 0.99601 0.97412 1.22434 0.93142 0.99096 0.88819 1.21800 1.02053 0.91070 1.04098 1.60440 0.99159 1.11623 1.55395 1.22082 0.90345 0.99253 0.98867 1.19723 0.84608 0.85993 0.86739 1.90505 1.86536 1.36165 1.34043 1.41835 1.05651 1.37344 1.34952 1.19704 0.83506 1.21847 1.17886 0.87915 1.25274 0.99661 0.96223 0.96793 1.69624 1.28482 1.26900 1.29167 0.85853 0.80878 0.77876 0.79635 1.20439 1.19404 1.20924 1.24877 0.80501 0.74333 0.91390 1.90679 1.31909 1.50239 1.58824 1.87333 1.33250 1.65435 1.40986 0.89956 0.91269 0.91171 0.91838 0.91027 0.89770 0.88219 0.87576 0.89767 0.91647 0.91192 0.82842 0.90605 0.89187 0.77360 0.91868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.88 8.82 37.16 0.33 -0.55 16 2 C 0.10 0.93 1.25 -89.90 -0.11 0.82 16 3 C -0.17 -1.44 8.70 37.16 0.32 -1.12 16 4 C -0.14 -1.26 5.69 -25.24 -0.14 -1.40 16 5 C 0.06 0.76 0.94 -131.59 -0.12 0.64 16 6 C -0.13 -1.51 8.16 37.16 0.30 -1.20 16 7 N -0.63 -10.38 5.69 -101.20 -0.58 -10.95 16 8 C 0.03 0.51 5.49 -4.98 -0.03 0.48 16 9 C 0.44 10.94 7.82 -10.98 -0.09 10.85 16 10 O -0.59 -16.22 15.78 5.55 0.09 -16.13 16 11 N -0.56 -14.87 5.29 -10.96 -0.06 -14.92 16 12 C -0.30 -8.60 9.68 -14.93 -0.14 -8.74 16 13 H 0.10 3.06 7.16 -52.49 -0.38 2.69 16 14 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 15 N -0.90 -25.20 13.05 55.50 0.72 -24.48 16 16 Si 0.93 21.46 29.55 -169.99 -5.02 16.44 16 17 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 18 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 19 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 20 C 0.45 6.83 7.06 36.40 0.26 7.09 16 21 O -0.44 -8.17 15.19 -18.30 -0.28 -8.45 16 22 O -0.35 -4.63 10.60 -40.26 -0.43 -5.06 16 23 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 24 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 25 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.67 7.94 -51.93 -0.41 0.25 16 27 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.10 0.70 7.42 -51.93 -0.39 0.32 16 30 H 0.11 0.95 7.62 -51.93 -0.40 0.56 16 31 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.88 6.44 -51.93 -0.33 0.54 16 34 H 0.35 5.96 8.40 -39.29 -0.33 5.63 16 35 H 0.08 1.51 5.37 -51.93 -0.28 1.23 16 36 H 0.09 1.59 6.35 -51.93 -0.33 1.26 16 37 H 0.39 10.08 7.90 -40.82 -0.32 9.76 16 38 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 315.49 15.07 4.75 4.75 Total: -1.00 -33.64 315.49 -5.58 -39.21 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: -5.26 Total: 12.21 kcal Atomic # 6 Polarization: 6.90 SS G_CDS: 0.48 Total: 7.37 kcal Atomic # 7 Polarization: -50.45 SS G_CDS: 0.09 Total: -50.36 kcal Atomic # 8 Polarization: -29.01 SS G_CDS: -0.62 Total: -29.63 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -33.64 -5.58 -39.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930874352.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.932 kcal (2) G-P(sol) polarization free energy of solvation -33.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds