Wall clock time and date at job start Mon Mar 30 2020 00:57:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 110.36659 * 2 1 4 4 C 1.54370 * 110.32328 * 122.17211 * 2 1 3 5 5 C 1.54470 * 103.04331 * 136.72171 * 4 2 1 6 6 C 1.53009 * 110.40134 * 241.47086 * 5 4 2 7 7 N 1.46895 * 110.40957 * 119.16649 * 5 4 2 8 8 C 1.46893 * 111.00318 * 181.63142 * 7 5 4 9 9 C 1.50708 * 109.47146 * 179.97438 * 8 7 5 10 10 O 1.21288 * 119.99815 * 359.97438 * 9 8 7 11 11 N 1.34774 * 119.99719 * 180.02562 * 9 8 7 12 12 C 1.37101 * 119.99349 * 180.02562 * 11 9 8 13 13 H 1.07991 * 120.00515 * 359.97438 * 12 11 9 14 14 C 1.38955 * 119.99490 * 179.97438 * 12 11 9 15 15 N 1.31413 * 120.00236 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99845 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47174 * 270.00316 * 16 14 12 18 18 H 1.48501 * 109.47062 * 30.00267 * 16 14 12 19 19 H 1.48504 * 109.46913 * 150.00066 * 16 14 12 20 20 C 1.51502 * 104.73346 * 0.31267 * 5 4 2 21 21 O 1.20829 * 125.94466 * 159.64277 * 20 5 4 22 22 O 1.34757 * 108.00789 * 339.77349 * 20 5 4 23 23 H 1.09002 * 109.47410 * 297.82426 * 1 2 3 24 24 H 1.08994 * 109.47294 * 57.82669 * 1 2 3 25 25 H 1.09000 * 109.46734 * 177.82873 * 1 2 3 26 26 H 1.08999 * 109.47097 * 182.17955 * 3 2 1 27 27 H 1.08998 * 109.46624 * 302.17841 * 3 2 1 28 28 H 1.09001 * 109.47253 * 62.17160 * 3 2 1 29 29 H 1.09000 * 110.69988 * 18.33127 * 4 2 1 30 30 H 1.08997 * 110.70407 * 255.11161 * 4 2 1 31 31 H 1.08994 * 109.47315 * 298.36428 * 6 5 4 32 32 H 1.08996 * 109.46883 * 58.36979 * 6 5 4 33 33 H 1.09003 * 109.46990 * 178.36708 * 6 5 4 34 34 H 1.00908 * 110.99391 * 305.58304 * 7 5 4 35 35 H 1.09002 * 109.47091 * 59.99845 * 8 7 5 36 36 H 1.09000 * 109.47343 * 299.99463 * 8 7 5 37 37 H 0.96996 * 120.00564 * 359.97438 * 11 9 8 38 38 H 0.97001 * 119.99781 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0625 1.4344 0.0000 4 6 2.0661 -0.7708 1.2253 5 6 3.2146 -1.6155 0.6306 6 6 2.9274 -3.1076 0.8100 7 7 4.4919 -1.2613 1.2637 8 6 5.5996 -2.0298 0.6804 9 6 6.8906 -1.6397 1.3530 10 8 6.8882 -0.8034 2.2315 11 7 8.0479 -2.2195 0.9777 12 6 9.2223 -1.8650 1.5900 13 1 9.2201 -1.1210 2.3727 14 6 10.4154 -2.4631 1.2033 15 7 10.4181 -3.3689 0.2512 16 14 12.0157 -1.9796 2.0370 17 1 12.6338 -0.8466 1.3026 18 1 11.7401 -1.5702 3.4376 19 1 12.9451 -3.1378 2.0336 20 6 3.2362 -1.2549 -0.8407 21 8 4.1670 -1.4099 -1.5953 22 8 2.0369 -0.7288 -1.1583 23 1 -0.3634 0.4797 0.9088 24 1 -0.3633 0.5472 -0.8698 25 1 -0.3633 -1.0270 -0.0389 26 1 3.1516 1.4176 -0.0391 27 1 1.6758 1.9654 -0.8698 28 1 1.7392 1.9420 0.9088 29 1 1.2923 -1.4136 1.6449 30 1 2.4456 -0.0807 1.9788 31 1 2.8619 -3.3399 1.8729 32 1 1.9838 -3.3568 0.3247 33 1 3.7320 -3.6892 0.3600 34 1 4.6656 -0.2694 1.1973 35 1 5.6674 -1.8169 -0.3864 36 1 5.4201 -3.0948 0.8278 37 1 8.0500 -2.8881 0.2749 38 1 11.2511 -3.7861 -0.0189 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930874352.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:52 Heat of formation + Delta-G solvation = -139.408593 kcal Electronic energy + Delta-G solvation = -21420.016787 eV Core-core repulsion = 18068.697413 eV Total energy + Delta-G solvation = -3351.319374 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.62747 -40.16722 -39.06885 -37.33703 -35.95001 -34.47993 -33.32555 -32.23027 -28.82231 -28.26113 -27.76985 -25.86684 -24.77006 -22.33374 -21.22398 -20.48916 -19.92906 -18.38359 -17.90229 -17.58895 -17.42538 -16.63844 -16.35821 -15.91483 -15.76310 -15.30557 -15.02503 -14.73914 -14.41145 -13.97956 -13.74415 -13.61354 -13.49052 -13.33041 -13.09534 -13.01781 -12.89750 -12.76199 -12.69206 -12.44115 -12.34018 -12.12652 -12.07626 -11.59393 -11.53287 -11.40831 -10.41946 -10.05501 -9.43939 -8.48455 -5.98483 0.67113 1.37138 1.40556 1.54427 1.99543 2.16055 2.26494 2.60823 2.89282 3.17592 3.25758 3.43223 3.58579 3.66824 3.89394 4.03058 4.21488 4.41741 4.49112 4.60062 4.62816 4.67801 4.71898 4.77889 4.81723 4.91441 5.01662 5.13126 5.14501 5.29920 5.38182 5.58327 5.71716 5.96615 6.01819 6.27980 6.54904 7.08187 7.50632 8.04511 8.69218 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.038934 B = 0.004003 C = 0.003924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.992768 B = 6993.296223 C = 7133.511086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.095 3.905 3 C -0.170 4.170 4 C -0.127 4.127 5 C 0.058 3.942 6 C -0.134 4.134 7 N -0.634 5.634 8 C 0.044 3.956 9 C 0.441 3.559 10 O -0.619 6.619 11 N -0.572 5.572 12 C -0.336 4.336 13 H 0.083 0.917 14 C -0.015 4.015 15 N -0.922 5.922 16 Si 0.998 3.002 17 H -0.271 1.271 18 H -0.269 1.269 19 H -0.270 1.270 20 C 0.451 3.549 21 O -0.485 6.485 22 O -0.363 6.363 23 H 0.110 0.890 24 H 0.069 0.931 25 H 0.076 0.924 26 H 0.036 0.964 27 H 0.074 0.926 28 H 0.111 0.889 29 H 0.132 0.868 30 H 0.111 0.889 31 H 0.097 0.903 32 H 0.090 0.910 33 H 0.052 0.948 34 H 0.346 0.654 35 H 0.070 0.930 36 H 0.108 0.892 37 H 0.394 0.606 38 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.016 3.632 0.370 22.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.059 3.941 3 C -0.228 4.228 4 C -0.164 4.164 5 C -0.036 4.036 6 C -0.191 4.191 7 N -0.267 5.267 8 C -0.088 4.088 9 C 0.228 3.772 10 O -0.506 6.506 11 N -0.208 5.208 12 C -0.466 4.466 13 H 0.101 0.899 14 C -0.214 4.214 15 N -0.563 5.563 16 Si 0.821 3.179 17 H -0.197 1.197 18 H -0.194 1.194 19 H -0.194 1.194 20 C 0.291 3.709 21 O -0.369 6.369 22 O -0.281 6.281 23 H 0.129 0.871 24 H 0.088 0.912 25 H 0.095 0.905 26 H 0.055 0.945 27 H 0.093 0.907 28 H 0.130 0.870 29 H 0.150 0.850 30 H 0.130 0.870 31 H 0.115 0.885 32 H 0.109 0.891 33 H 0.071 0.929 34 H 0.165 0.835 35 H 0.088 0.912 36 H 0.125 0.875 37 H 0.228 0.772 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -21.636 3.563 0.833 21.943 hybrid contribution 1.468 0.205 -1.287 1.963 sum -20.168 3.767 -0.454 20.522 Atomic orbital electron populations 1.21926 0.88056 1.04482 1.04859 1.23468 0.97965 0.91322 0.81301 1.22388 1.00418 0.94532 1.05417 1.23212 0.96346 0.99560 0.97305 1.22698 0.92475 1.00987 0.87406 1.21876 1.02732 0.89389 1.05102 1.60476 0.99647 1.10930 1.55666 1.21853 0.88646 1.00512 0.97769 1.20633 0.85779 0.84760 0.86018 1.90467 1.87303 1.37361 1.35495 1.41929 1.05950 1.37798 1.35158 1.19726 0.85146 1.22883 1.18808 0.89937 1.26140 1.02518 0.95687 0.97079 1.69697 1.29729 1.27148 1.29677 0.84862 0.76573 0.78060 0.78423 1.19665 1.19398 1.19426 1.25257 0.80382 0.73361 0.91933 1.90644 1.33822 1.52233 1.60234 1.87324 1.32154 1.65354 1.43243 0.87146 0.91239 0.90477 0.94478 0.90736 0.86996 0.84992 0.87032 0.88452 0.89108 0.92878 0.83492 0.91195 0.87453 0.77205 0.91227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 8.82 71.98 0.64 -0.57 16 2 C 0.10 1.52 1.25 -10.33 -0.01 1.51 16 3 C -0.17 -2.66 8.70 71.98 0.63 -2.04 16 4 C -0.13 -1.97 5.69 31.56 0.18 -1.79 16 5 C 0.06 1.41 0.94 3.54 0.00 1.42 16 6 C -0.13 -2.76 8.16 71.99 0.59 -2.17 16 7 N -0.63 -20.67 5.69 -474.10 -2.70 -23.36 16 8 C 0.04 1.73 5.49 85.56 0.47 2.20 16 9 C 0.44 22.34 7.82 87.66 0.69 23.03 16 10 O -0.62 -35.12 15.78 -3.05 -0.05 -35.17 16 11 N -0.57 -31.23 5.29 -306.98 -1.62 -32.85 16 12 C -0.34 -19.79 9.68 84.04 0.81 -18.98 16 13 H 0.08 5.10 7.16 -2.92 -0.02 5.08 16 14 C -0.01 -0.80 5.50 84.93 0.47 -0.34 16 15 N -0.92 -51.72 13.05 21.66 0.28 -51.44 16 16 Si 1.00 43.92 29.55 68.60 2.03 45.94 16 17 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 18 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 19 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 20 C 0.45 13.60 7.06 71.49 0.50 14.11 16 21 O -0.49 -18.81 15.19 21.52 0.33 -18.48 16 22 O -0.36 -9.17 10.60 -57.05 -0.60 -9.78 16 23 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 24 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 25 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.04 0.77 7.94 -2.39 -0.02 0.75 16 27 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.13 1.24 7.42 -2.39 -0.02 1.22 16 30 H 0.11 1.68 7.62 -2.39 -0.02 1.66 16 31 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.05 1.27 6.44 -2.39 -0.02 1.26 16 34 H 0.35 11.89 8.40 -89.69 -0.75 11.14 16 35 H 0.07 2.89 5.37 -2.39 -0.01 2.88 16 36 H 0.11 3.82 6.35 -2.39 -0.02 3.80 16 37 H 0.39 20.91 7.90 -92.71 -0.73 20.17 16 38 H 0.28 14.55 8.31 -92.71 -0.77 13.78 16 Total: -1.00 -74.78 315.49 2.23 -72.55 By element: Atomic # 1 Polarization: 36.60 SS G_CDS: -0.39 Total: 36.21 kcal Atomic # 6 Polarization: 11.42 SS G_CDS: 4.96 Total: 16.38 kcal Atomic # 7 Polarization: -103.62 SS G_CDS: -4.04 Total: -107.66 kcal Atomic # 8 Polarization: -63.10 SS G_CDS: -0.33 Total: -63.43 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.94 kcal Total: -74.78 2.23 -72.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930874352.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.858 kcal (2) G-P(sol) polarization free energy of solvation -74.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds