Wall clock time and date at job start Mon Mar 30 2020 01:01:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47142 * 2 1 4 4 C 1.53001 * 109.47140 * 120.00382 * 2 1 3 5 5 C 1.50699 * 112.99809 * 168.43041 * 4 2 1 6 6 O 1.21282 * 120.00311 * 354.06846 * 5 4 2 7 7 N 1.34780 * 119.99486 * 174.06854 * 5 4 2 8 8 C 1.46499 * 119.99482 * 179.97438 * 7 5 4 9 9 C 1.50701 * 109.46879 * 179.97438 * 8 7 5 10 10 O 1.21295 * 120.00106 * 0.02562 * 9 8 7 11 11 N 1.34779 * 120.00278 * 180.02562 * 9 8 7 12 12 C 1.37096 * 120.00426 * 180.02562 * 11 9 8 13 13 H 1.08000 * 119.99960 * 0.02562 * 12 11 9 14 14 C 1.38947 * 119.99914 * 180.02562 * 12 11 9 15 15 N 1.31407 * 120.00368 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 119.99734 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47161 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47320 * 120.00053 * 16 14 12 19 19 H 1.48498 * 109.46930 * 239.99785 * 16 14 12 20 20 C 1.54031 * 113.81766 * 36.43849 * 4 2 1 21 21 O 1.44176 * 85.52108 * 223.20086 * 20 4 2 22 22 C 1.44184 * 93.33688 * 24.19160 * 21 20 4 23 23 H 1.09003 * 109.47026 * 53.05504 * 1 2 3 24 24 H 1.09003 * 109.47609 * 173.05212 * 1 2 3 25 25 H 1.09000 * 109.47115 * 293.05652 * 1 2 3 26 26 H 1.09004 * 109.47131 * 239.99990 * 2 1 3 27 27 H 1.09004 * 109.47415 * 184.01675 * 3 2 1 28 28 H 1.08997 * 109.47389 * 304.01944 * 3 2 1 29 29 H 1.08997 * 109.47383 * 64.01861 * 3 2 1 30 30 H 0.96998 * 120.00346 * 0.02562 * 7 5 4 31 31 H 1.08992 * 109.47701 * 300.00335 * 8 7 5 32 32 H 1.09001 * 109.47399 * 60.00689 * 8 7 5 33 33 H 0.97005 * 119.99404 * 0.02562 * 11 9 8 34 34 H 0.97001 * 120.00626 * 180.02562 * 15 14 12 35 35 H 1.09002 * 113.86636 * 337.34990 * 20 4 2 36 36 H 1.09002 * 113.86417 * 109.04991 * 20 4 2 37 37 H 1.09004 * 113.86359 * 221.65721 * 22 21 20 38 38 H 1.08996 * 113.85943 * 89.95961 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5175 -1.0133 1.1985 6 8 4.1481 -0.7774 0.1897 7 7 4.1383 -1.5367 2.2743 8 6 5.5745 -1.8210 2.2248 9 6 6.0186 -2.3958 3.5453 10 8 5.2143 -2.5529 4.4395 11 7 7.3094 -2.7353 3.7326 12 6 7.7132 -3.2586 4.9337 13 1 6.9969 -3.3992 5.7296 14 6 9.0441 -3.6081 5.1269 15 7 9.9156 -3.4374 4.1583 16 14 9.5942 -4.3218 6.7632 17 1 8.4297 -4.4126 7.6802 18 1 10.1611 -5.6771 6.5466 19 1 10.6292 -3.4426 7.3638 20 6 1.1785 -1.9284 1.6658 21 8 1.3309 -1.4296 3.0099 22 6 1.5779 -0.0787 2.5706 23 1 -0.3633 0.6177 -0.8213 24 1 -0.3634 -1.0201 -0.1243 25 1 -0.3633 0.4025 0.9456 26 1 1.8933 -0.5139 -0.8900 27 1 3.1276 1.4433 -0.0720 28 1 1.6190 1.9767 -0.8517 29 1 1.7367 1.9351 0.9238 30 1 3.6339 -1.7257 3.0810 31 1 5.7757 -2.5388 1.4297 32 1 6.1211 -0.8986 2.0284 33 1 7.9526 -2.6093 3.0175 34 1 10.8446 -3.6817 4.2930 35 1 0.1546 -1.8886 1.2941 36 1 1.6584 -2.8922 1.4959 37 1 2.3746 0.4246 3.1186 38 1 0.6760 0.5258 2.4753 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935963026.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:21 Heat of formation + Delta-G solvation = -92.646966 kcal Electronic energy + Delta-G solvation = -21160.238593 eV Core-core repulsion = 17810.946955 eV Total energy + Delta-G solvation = -3349.291638 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.63419 -38.87018 -37.95001 -35.43583 -34.34616 -33.60084 -31.37827 -29.47138 -27.95537 -27.24109 -26.45994 -24.56336 -23.16347 -21.05293 -19.68831 -18.80274 -18.01461 -17.29829 -16.74726 -16.20835 -15.73166 -15.24852 -15.18484 -15.01153 -14.53740 -14.20454 -13.98429 -13.77987 -13.45419 -13.03046 -12.84890 -12.35636 -12.34445 -12.15232 -11.95157 -11.63161 -11.56847 -11.18358 -11.13034 -10.67956 -10.52687 -10.40060 -10.32325 -10.11722 -9.64028 -9.43599 -8.81438 -8.61859 -8.09407 -6.51000 -3.92837 2.56788 3.10858 3.21286 3.24913 3.32059 3.42651 3.74220 4.10830 4.11589 4.40651 4.73555 4.81796 4.86682 4.88695 5.05022 5.15863 5.17423 5.32900 5.36753 5.45458 5.59279 5.60909 5.72014 5.78462 5.86047 5.91403 5.92593 5.93653 6.07093 6.16173 6.19449 6.66869 7.47012 7.80204 7.92875 8.39152 8.46572 9.05554 9.39800 9.88023 10.66019 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.041076 B = 0.003789 C = 0.003583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.504817 B = 7387.664474 C = 7813.036389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.073 4.073 3 C -0.148 4.148 4 C -0.148 4.148 5 C 0.533 3.467 6 O -0.541 6.541 7 N -0.700 5.700 8 C 0.107 3.893 9 C 0.427 3.573 10 O -0.592 6.592 11 N -0.550 5.550 12 C -0.304 4.304 13 H 0.106 0.894 14 C 0.025 3.975 15 N -0.895 5.895 16 Si 0.932 3.068 17 H -0.267 1.267 18 H -0.280 1.280 19 H -0.280 1.280 20 C 0.047 3.953 21 O -0.370 6.370 22 C 0.049 3.951 23 H 0.061 0.939 24 H 0.059 0.941 25 H 0.058 0.942 26 H 0.085 0.915 27 H 0.065 0.935 28 H 0.056 0.944 29 H 0.051 0.949 30 H 0.418 0.582 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.396 0.604 34 H 0.273 0.727 35 H 0.099 0.901 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.645 6.821 -8.078 18.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.092 4.092 3 C -0.205 4.205 4 C -0.151 4.151 5 C 0.318 3.682 6 O -0.419 6.419 7 N -0.355 5.355 8 C -0.020 4.020 9 C 0.213 3.787 10 O -0.479 6.479 11 N -0.185 5.185 12 C -0.433 4.433 13 H 0.124 0.876 14 C -0.177 4.177 15 N -0.536 5.536 16 Si 0.759 3.241 17 H -0.191 1.191 18 H -0.206 1.206 19 H -0.206 1.206 20 C -0.030 4.030 21 O -0.288 6.288 22 C -0.028 4.028 23 H 0.080 0.920 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.104 0.896 27 H 0.085 0.915 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.258 0.742 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.229 0.771 34 H 0.083 0.917 35 H 0.117 0.883 36 H 0.113 0.887 37 H 0.114 0.886 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -15.492 6.697 -7.904 18.637 hybrid contribution 0.692 -0.317 0.505 0.913 sum -14.800 6.380 -7.399 17.734 Atomic orbital electron populations 1.22066 0.94819 1.01970 1.02234 1.20844 0.95063 0.96749 0.96575 1.21817 1.02445 0.94816 1.01396 1.23927 0.94132 0.98536 0.98533 1.19612 0.87767 0.77609 0.83225 1.90676 1.66720 1.52936 1.31565 1.45810 1.09715 1.62843 1.17139 1.20986 0.81615 1.01480 0.97952 1.19743 0.83985 0.85868 0.89133 1.90526 1.52657 1.60315 1.44361 1.41799 1.06987 1.54269 1.15436 1.19790 0.93940 1.37858 0.91742 0.87603 1.25321 0.95573 0.97459 0.99388 1.69619 1.03913 1.47498 1.32531 0.85758 0.78781 0.78391 0.81173 1.19102 1.20616 1.20623 1.24208 0.99609 0.97249 0.81948 1.89782 1.92925 1.20755 1.25341 1.24100 1.00830 0.86789 0.91107 0.91978 0.92175 0.92301 0.89641 0.91549 0.92450 0.92943 0.74155 0.89809 0.89803 0.77078 0.91661 0.88342 0.88733 0.88578 0.88830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 8.06 37.16 0.30 -0.81 16 2 C -0.07 -0.73 2.32 -90.62 -0.21 -0.94 16 3 C -0.15 -1.45 8.89 37.15 0.33 -1.12 16 4 C -0.15 -1.74 0.92 -154.58 -0.14 -1.89 16 5 C 0.53 8.41 6.81 -10.98 -0.07 8.33 16 6 O -0.54 -9.80 15.17 5.56 0.08 -9.72 16 7 N -0.70 -12.16 5.36 -61.47 -0.33 -12.49 16 8 C 0.11 2.02 6.15 -5.19 -0.03 1.99 16 9 C 0.43 9.99 7.85 -10.98 -0.09 9.90 16 10 O -0.59 -15.60 15.24 5.54 0.08 -15.51 16 11 N -0.55 -13.77 5.29 -10.96 -0.06 -13.83 16 12 C -0.30 -8.33 9.68 -14.93 -0.14 -8.48 16 13 H 0.11 3.04 7.16 -52.49 -0.38 2.66 16 14 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 15 N -0.90 -24.01 13.05 55.50 0.72 -23.29 16 16 Si 0.93 20.67 29.55 -169.99 -5.02 15.65 16 17 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 18 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 19 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 20 C 0.05 0.51 7.97 37.61 0.30 0.81 16 21 O -0.37 -4.95 11.12 -35.23 -0.39 -5.34 16 22 C 0.05 0.54 6.79 37.61 0.26 0.79 16 23 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 24 H 0.06 0.39 6.53 -51.93 -0.34 0.05 16 25 H 0.06 0.39 6.26 -51.93 -0.33 0.06 16 26 H 0.09 0.96 7.83 -51.93 -0.41 0.56 16 27 H 0.07 0.81 7.12 -51.93 -0.37 0.44 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.05 0.46 7.30 -51.93 -0.38 0.08 16 30 H 0.42 7.61 5.78 -40.82 -0.24 7.38 16 31 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 32 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 33 H 0.40 9.50 7.90 -40.82 -0.32 9.17 16 34 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 35 H 0.10 0.80 5.60 -51.93 -0.29 0.51 16 36 H 0.09 1.07 8.09 -51.93 -0.42 0.65 16 37 H 0.10 1.11 8.09 -51.93 -0.42 0.69 16 38 H 0.09 0.78 6.33 -51.93 -0.33 0.45 16 LS Contribution 311.93 15.07 4.70 4.70 Total: -1.00 -31.33 311.93 -4.85 -36.18 By element: Atomic # 1 Polarization: 19.54 SS G_CDS: -5.04 Total: 14.50 kcal Atomic # 6 Polarization: 8.75 SS G_CDS: 0.40 Total: 9.15 kcal Atomic # 7 Polarization: -49.94 SS G_CDS: 0.34 Total: -49.61 kcal Atomic # 8 Polarization: -30.35 SS G_CDS: -0.22 Total: -30.57 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -31.33 -4.85 -36.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935963026.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.464 kcal (2) G-P(sol) polarization free energy of solvation -31.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds