Wall clock time and date at job start Mon Mar 30 2020 01:01:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47142 * 2 1 4 4 C 1.53001 * 109.47140 * 120.00382 * 2 1 3 5 5 C 1.50699 * 112.99809 * 168.43041 * 4 2 1 6 6 O 1.21282 * 120.00311 * 354.06846 * 5 4 2 7 7 N 1.34780 * 119.99486 * 174.06854 * 5 4 2 8 8 C 1.46499 * 119.99482 * 179.97438 * 7 5 4 9 9 C 1.50701 * 109.46879 * 179.97438 * 8 7 5 10 10 O 1.21295 * 120.00106 * 0.02562 * 9 8 7 11 11 N 1.34779 * 120.00278 * 180.02562 * 9 8 7 12 12 C 1.37096 * 120.00426 * 180.02562 * 11 9 8 13 13 H 1.08000 * 119.99960 * 0.02562 * 12 11 9 14 14 C 1.38947 * 119.99914 * 180.02562 * 12 11 9 15 15 N 1.31407 * 120.00368 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 119.99734 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47161 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47320 * 120.00053 * 16 14 12 19 19 H 1.48498 * 109.46930 * 239.99785 * 16 14 12 20 20 C 1.54031 * 113.81766 * 36.43849 * 4 2 1 21 21 O 1.44176 * 85.52108 * 223.20086 * 20 4 2 22 22 C 1.44184 * 93.33688 * 24.19160 * 21 20 4 23 23 H 1.09003 * 109.47026 * 53.05504 * 1 2 3 24 24 H 1.09003 * 109.47609 * 173.05212 * 1 2 3 25 25 H 1.09000 * 109.47115 * 293.05652 * 1 2 3 26 26 H 1.09004 * 109.47131 * 239.99990 * 2 1 3 27 27 H 1.09004 * 109.47415 * 184.01675 * 3 2 1 28 28 H 1.08997 * 109.47389 * 304.01944 * 3 2 1 29 29 H 1.08997 * 109.47383 * 64.01861 * 3 2 1 30 30 H 0.96998 * 120.00346 * 0.02562 * 7 5 4 31 31 H 1.08992 * 109.47701 * 300.00335 * 8 7 5 32 32 H 1.09001 * 109.47399 * 60.00689 * 8 7 5 33 33 H 0.97005 * 119.99404 * 0.02562 * 11 9 8 34 34 H 0.97001 * 120.00626 * 180.02562 * 15 14 12 35 35 H 1.09002 * 113.86636 * 337.34990 * 20 4 2 36 36 H 1.09002 * 113.86417 * 109.04991 * 20 4 2 37 37 H 1.09004 * 113.86359 * 221.65721 * 22 21 20 38 38 H 1.08996 * 113.85943 * 89.95961 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5175 -1.0133 1.1985 6 8 4.1481 -0.7774 0.1897 7 7 4.1383 -1.5367 2.2743 8 6 5.5745 -1.8210 2.2248 9 6 6.0186 -2.3958 3.5453 10 8 5.2143 -2.5529 4.4395 11 7 7.3094 -2.7353 3.7326 12 6 7.7132 -3.2586 4.9337 13 1 6.9969 -3.3992 5.7296 14 6 9.0441 -3.6081 5.1269 15 7 9.9156 -3.4374 4.1583 16 14 9.5942 -4.3218 6.7632 17 1 8.4297 -4.4126 7.6802 18 1 10.1611 -5.6771 6.5466 19 1 10.6292 -3.4426 7.3638 20 6 1.1785 -1.9284 1.6658 21 8 1.3309 -1.4296 3.0099 22 6 1.5779 -0.0787 2.5706 23 1 -0.3633 0.6177 -0.8213 24 1 -0.3634 -1.0201 -0.1243 25 1 -0.3633 0.4025 0.9456 26 1 1.8933 -0.5139 -0.8900 27 1 3.1276 1.4433 -0.0720 28 1 1.6190 1.9767 -0.8517 29 1 1.7367 1.9351 0.9238 30 1 3.6339 -1.7257 3.0810 31 1 5.7757 -2.5388 1.4297 32 1 6.1211 -0.8986 2.0284 33 1 7.9526 -2.6093 3.0175 34 1 10.8446 -3.6817 4.2930 35 1 0.1546 -1.8886 1.2941 36 1 1.6584 -2.8922 1.4959 37 1 2.3746 0.4246 3.1186 38 1 0.6760 0.5258 2.4753 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000935963026.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:20 Heat of formation + Delta-G solvation = -116.704463 kcal Electronic energy + Delta-G solvation = -21161.281804 eV Core-core repulsion = 17810.946955 eV Total energy + Delta-G solvation = -3350.334849 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.63200 -40.49107 -39.50107 -36.48158 -36.04690 -35.16055 -33.40373 -30.60916 -28.93892 -28.46091 -27.26031 -26.43122 -24.13709 -22.19299 -21.41703 -20.28334 -19.78818 -18.40397 -17.78395 -17.36371 -17.17062 -16.69217 -16.64396 -16.46293 -15.99102 -15.60606 -15.49213 -15.17220 -14.55188 -14.01995 -13.96524 -13.78933 -13.57237 -13.46767 -13.12736 -12.94511 -12.92865 -12.46949 -12.35028 -12.12395 -11.96498 -11.60334 -11.48199 -11.42365 -11.18603 -10.59489 -10.45944 -10.25815 -10.10970 -8.53281 -6.03669 1.32506 1.35642 1.41742 1.55957 1.87336 1.93734 2.29621 2.53019 3.06967 3.13038 3.17859 3.45506 3.77752 4.00993 4.14065 4.18936 4.30438 4.34410 4.36251 4.39837 4.50633 4.57404 4.76444 4.81571 4.87977 5.02287 5.05302 5.09464 5.20702 5.26747 5.36527 5.43490 5.48525 5.89307 6.41099 6.48160 7.01191 7.05891 7.40875 7.91806 8.63854 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.041076 B = 0.003789 C = 0.003583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.504817 B = 7387.664474 C = 7813.036389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.070 4.070 3 C -0.147 4.147 4 C -0.148 4.148 5 C 0.531 3.469 6 O -0.567 6.567 7 N -0.706 5.706 8 C 0.119 3.881 9 C 0.430 3.570 10 O -0.623 6.623 11 N -0.558 5.558 12 C -0.338 4.338 13 H 0.085 0.915 14 C -0.010 4.010 15 N -0.916 5.916 16 Si 0.998 3.002 17 H -0.271 1.271 18 H -0.270 1.270 19 H -0.270 1.270 20 C 0.051 3.949 21 O -0.399 6.399 22 C 0.053 3.947 23 H 0.074 0.926 24 H 0.069 0.931 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.034 0.966 28 H 0.073 0.927 29 H 0.065 0.935 30 H 0.415 0.585 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.399 0.601 34 H 0.280 0.720 35 H 0.134 0.866 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.029 7.235 -8.293 20.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.089 4.089 3 C -0.204 4.204 4 C -0.151 4.151 5 C 0.318 3.682 6 O -0.446 6.446 7 N -0.360 5.360 8 C -0.009 4.009 9 C 0.217 3.783 10 O -0.511 6.511 11 N -0.193 5.193 12 C -0.467 4.467 13 H 0.103 0.897 14 C -0.210 4.210 15 N -0.556 5.556 16 Si 0.821 3.179 17 H -0.195 1.195 18 H -0.195 1.195 19 H -0.195 1.195 20 C -0.025 4.025 21 O -0.318 6.318 22 C -0.023 4.023 23 H 0.093 0.907 24 H 0.088 0.912 25 H 0.089 0.911 26 H 0.087 0.913 27 H 0.054 0.946 28 H 0.092 0.908 29 H 0.084 0.916 30 H 0.255 0.745 31 H 0.113 0.887 32 H 0.113 0.887 33 H 0.233 0.767 34 H 0.090 0.910 35 H 0.152 0.848 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -16.877 7.123 -8.150 20.050 hybrid contribution 1.116 -0.421 0.518 1.301 sum -15.761 6.702 -7.632 18.750 Atomic orbital electron populations 1.22048 0.92040 1.03080 1.03445 1.20858 0.97199 0.96125 0.94695 1.21815 1.00472 0.95270 1.02852 1.23923 0.91114 0.99837 1.00237 1.20349 0.89481 0.76275 0.82068 1.90660 1.67844 1.53787 1.32300 1.45888 1.08931 1.63538 1.17680 1.20815 0.82954 1.01879 0.95207 1.20427 0.83140 0.84489 0.90227 1.90499 1.53351 1.61255 1.45992 1.41837 1.07690 1.54730 1.15075 1.19775 0.94426 1.40107 0.92407 0.89696 1.26132 0.95046 0.97097 1.02758 1.69679 1.04370 1.47497 1.34005 0.84805 0.78166 0.78071 0.76897 1.19512 1.19521 1.19513 1.24419 1.01105 0.96240 0.80759 1.89762 1.93183 1.22048 1.26776 1.24281 1.01963 0.86310 0.89755 0.90716 0.91172 0.91115 0.91301 0.94645 0.90842 0.91615 0.74529 0.88711 0.88666 0.76689 0.91009 0.84832 0.89698 0.89663 0.85338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 8.06 71.98 0.58 -1.03 16 2 C -0.07 -1.25 2.32 -10.80 -0.03 -1.28 16 3 C -0.15 -2.66 8.89 71.98 0.64 -2.02 16 4 C -0.15 -3.29 0.92 -52.23 -0.05 -3.34 16 5 C 0.53 16.69 6.81 87.66 0.60 17.29 16 6 O -0.57 -20.63 15.17 -3.04 -0.05 -20.68 16 7 N -0.71 -24.72 5.36 -466.79 -2.50 -27.22 16 8 C 0.12 4.53 6.15 85.63 0.53 5.05 16 9 C 0.43 20.55 7.85 87.66 0.69 21.24 16 10 O -0.62 -33.65 15.24 -3.07 -0.05 -33.69 16 11 N -0.56 -28.57 5.29 -306.98 -1.62 -30.19 16 12 C -0.34 -18.92 9.68 84.04 0.81 -18.11 16 13 H 0.09 5.03 7.16 -2.91 -0.02 5.01 16 14 C -0.01 -0.51 5.50 84.93 0.47 -0.04 16 15 N -0.92 -48.93 13.05 21.66 0.28 -48.64 16 16 Si 1.00 42.15 29.55 68.60 2.03 44.18 16 17 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 18 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 19 H -0.27 -10.92 7.11 99.48 0.71 -10.22 16 20 C 0.05 1.03 7.97 72.27 0.58 1.60 16 21 O -0.40 -10.16 11.12 -148.98 -1.66 -11.82 16 22 C 0.05 1.08 6.79 72.27 0.49 1.57 16 23 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 24 H 0.07 0.63 6.53 -2.39 -0.02 0.62 16 25 H 0.07 0.62 6.26 -2.39 -0.01 0.60 16 26 H 0.07 1.48 7.83 -2.38 -0.02 1.46 16 27 H 0.03 0.85 7.12 -2.38 -0.02 0.84 16 28 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.06 0.99 7.30 -2.39 -0.02 0.97 16 30 H 0.42 15.33 5.78 -92.71 -0.54 14.80 16 31 H 0.09 3.40 8.14 -2.39 -0.02 3.39 16 32 H 0.10 3.41 8.14 -2.39 -0.02 3.39 16 33 H 0.40 19.54 7.90 -92.70 -0.73 18.81 16 34 H 0.28 13.94 8.31 -92.71 -0.77 13.17 16 35 H 0.13 1.72 5.60 -2.39 -0.01 1.71 16 36 H 0.08 1.85 8.09 -2.39 -0.02 1.83 16 37 H 0.09 1.90 8.09 -2.39 -0.02 1.88 16 38 H 0.13 1.68 6.33 -2.39 -0.02 1.67 16 Total: -1.00 -68.11 311.93 1.58 -66.53 By element: Atomic # 1 Polarization: 40.76 SS G_CDS: -0.17 Total: 40.59 kcal Atomic # 6 Polarization: 15.63 SS G_CDS: 5.31 Total: 20.94 kcal Atomic # 7 Polarization: -102.21 SS G_CDS: -3.84 Total: -106.05 kcal Atomic # 8 Polarization: -64.44 SS G_CDS: -1.75 Total: -66.19 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.18 kcal Total: -68.11 1.58 -66.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935963026.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.171 kcal (2) G-P(sol) polarization free energy of solvation -68.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds