Wall clock time and date at job start Mon Mar 30 2020 01:00:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47297 * 2 1 4 4 C 1.52999 * 112.99827 * 179.97438 * 3 2 1 5 5 C 1.50699 * 109.47254 * 294.74092 * 4 3 2 6 6 O 1.21282 * 119.99900 * 354.23912 * 5 4 3 7 7 N 1.34777 * 120.00057 * 174.24133 * 5 4 3 8 8 C 1.46496 * 120.00223 * 179.97438 * 7 5 4 9 9 C 1.50700 * 109.47247 * 179.97438 * 8 7 5 10 10 O 1.21299 * 119.99839 * 0.02562 * 9 8 7 11 11 N 1.34778 * 119.99966 * 180.02562 * 9 8 7 12 12 C 1.37094 * 119.99980 * 180.02562 * 11 9 8 13 13 H 1.08006 * 119.99678 * 0.02562 * 12 11 9 14 14 C 1.38948 * 120.00271 * 180.02562 * 12 11 9 15 15 N 1.31409 * 119.99898 * 359.97438 * 14 12 11 16 16 Si 1.86806 * 120.00204 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.46823 * 59.99744 * 16 14 12 18 18 H 1.48497 * 109.46790 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.46673 * 299.99588 * 16 14 12 20 20 C 1.54038 * 113.81243 * 48.17489 * 3 2 1 21 21 O 1.44447 * 85.42363 * 223.23848 * 20 3 2 22 22 C 1.44179 * 93.38283 * 24.08590 * 21 20 3 23 23 H 1.09000 * 109.47254 * 59.99717 * 1 2 3 24 24 H 1.09004 * 109.47581 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47618 * 300.00375 * 1 2 3 26 26 H 1.08997 * 109.47099 * 240.00088 * 2 1 3 27 27 H 1.09000 * 109.46838 * 119.99944 * 2 1 3 28 28 H 1.08996 * 109.47045 * 54.74374 * 4 3 2 29 29 H 1.09009 * 109.46701 * 174.74221 * 4 3 2 30 30 H 0.97007 * 119.99665 * 0.02562 * 7 5 4 31 31 H 1.08995 * 109.47207 * 299.99873 * 8 7 5 32 32 H 1.09001 * 109.46759 * 60.00349 * 8 7 5 33 33 H 0.96993 * 119.99887 * 0.02562 * 11 9 8 34 34 H 0.97003 * 120.00147 * 179.97438 * 15 14 12 35 35 H 1.08998 * 113.86903 * 337.34057 * 20 3 2 36 36 H 1.08996 * 113.86914 * 109.05112 * 20 3 2 37 37 H 1.08995 * 113.87194 * 221.76987 * 22 21 20 38 38 H 1.09006 * 113.85923 * 90.06112 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5671 1.5366 0.0006 5 6 4.1045 0.9742 1.2913 6 8 3.3403 0.6374 2.1708 7 7 5.4344 0.8455 1.4683 8 6 5.9569 0.2993 2.7232 9 6 7.4623 0.2606 2.6660 10 8 8.0418 0.6514 1.6746 11 7 8.1648 -0.2082 3.7164 12 6 9.5343 -0.2429 3.6646 13 1 10.0503 0.1059 2.7822 14 6 10.2585 -0.7266 4.7472 15 7 9.6307 -1.1504 5.8211 16 14 12.1247 -0.7732 4.6769 17 1 12.6471 0.6031 4.4819 18 1 12.6542 -1.3277 5.9486 19 1 12.5559 -1.6316 3.5445 20 6 1.3613 2.3421 1.0501 21 8 1.3053 3.3305 -0.0018 22 6 1.3614 2.3422 -1.0501 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8932 -0.5138 0.8900 28 1 3.9665 0.9667 -0.8383 29 1 3.8668 2.5804 -0.0936 30 1 6.0456 1.1153 0.7650 31 1 5.6406 0.9303 3.5537 32 1 5.5731 -0.7107 2.8675 33 1 7.7013 -0.5210 4.5090 34 1 10.1363 -1.4885 6.5768 35 1 0.3832 1.9843 1.3715 36 1 2.0107 2.6171 1.8812 37 1 2.0108 2.6171 -1.8811 38 1 0.3832 1.9843 -1.3715 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935963098.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:22 Heat of formation + Delta-G solvation = -94.614143 kcal Electronic energy + Delta-G solvation = -20614.737474 eV Core-core repulsion = 17265.360534 eV Total energy + Delta-G solvation = -3349.376941 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.22545 -39.28080 -38.06955 -34.55362 -34.12699 -33.67355 -31.44151 -30.92611 -27.95208 -26.71069 -26.07186 -24.42731 -23.58629 -20.42716 -19.66260 -18.60591 -18.07154 -17.23859 -16.51650 -16.11207 -15.99606 -15.42544 -15.35111 -15.18807 -14.47146 -14.21908 -13.96993 -13.90658 -13.52575 -13.27897 -12.75648 -12.33907 -12.20599 -12.10803 -11.85951 -11.65540 -11.39169 -11.35215 -11.12173 -10.59536 -10.52651 -10.39723 -10.33681 -9.79724 -9.65270 -9.47279 -8.82368 -8.66498 -8.12976 -6.53958 -3.96215 2.77794 3.11980 3.19393 3.21185 3.28801 3.63182 3.71147 4.06341 4.14086 4.43395 4.70530 4.84729 4.90413 4.99073 5.12642 5.14398 5.28463 5.31570 5.34414 5.44463 5.52024 5.59299 5.82620 5.86530 5.92392 5.95914 5.99408 6.03165 6.04183 6.10381 6.23333 6.64909 7.43347 7.76574 7.89056 8.39073 8.43579 9.01853 9.36309 9.84176 10.62813 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.048281 B = 0.003135 C = 0.003069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.805043 B = 8929.340100 C = 9120.915563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.121 4.121 3 C -0.106 4.106 4 C -0.120 4.120 5 C 0.513 3.487 6 O -0.546 6.546 7 N -0.708 5.708 8 C 0.109 3.891 9 C 0.427 3.573 10 O -0.598 6.598 11 N -0.548 5.548 12 C -0.307 4.307 13 H 0.105 0.895 14 C 0.027 3.973 15 N -0.895 5.895 16 Si 0.934 3.066 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.272 1.272 20 C 0.049 3.951 21 O -0.386 6.386 22 C 0.037 3.963 23 H 0.054 0.946 24 H 0.056 0.944 25 H 0.058 0.942 26 H 0.062 0.938 27 H 0.085 0.915 28 H 0.098 0.902 29 H 0.102 0.898 30 H 0.411 0.589 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.396 0.604 34 H 0.275 0.725 35 H 0.085 0.915 36 H 0.095 0.905 37 H 0.088 0.912 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.362 2.677 -10.099 18.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.158 4.158 3 C -0.106 4.106 4 C -0.160 4.160 5 C 0.299 3.701 6 O -0.424 6.424 7 N -0.361 5.361 8 C -0.018 4.018 9 C 0.212 3.788 10 O -0.485 6.485 11 N -0.183 5.183 12 C -0.436 4.436 13 H 0.123 0.877 14 C -0.176 4.176 15 N -0.535 5.535 16 Si 0.760 3.240 17 H -0.197 1.197 18 H -0.208 1.208 19 H -0.198 1.198 20 C -0.027 4.027 21 O -0.305 6.305 22 C -0.040 4.040 23 H 0.073 0.927 24 H 0.075 0.925 25 H 0.077 0.923 26 H 0.081 0.919 27 H 0.103 0.897 28 H 0.117 0.883 29 H 0.120 0.880 30 H 0.249 0.751 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.230 0.770 34 H 0.085 0.915 35 H 0.103 0.897 36 H 0.113 0.887 37 H 0.106 0.894 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -15.417 2.887 -9.909 18.553 hybrid contribution 1.064 -0.368 0.255 1.155 sum -14.352 2.519 -9.654 17.479 Atomic orbital electron populations 1.21961 0.95875 1.01794 1.01719 1.21547 0.95789 0.95145 1.03352 1.23278 0.94382 0.96790 0.96178 1.21430 0.94193 1.03616 0.96725 1.20446 0.82076 0.78460 0.89119 1.90661 1.57046 1.50366 1.44364 1.45756 1.06951 1.64228 1.19206 1.20939 0.93693 1.00116 0.87095 1.19759 0.88000 0.85553 0.85460 1.90497 1.70832 1.54140 1.33011 1.41790 1.07290 1.54061 1.15141 1.19688 0.80869 1.40266 1.02794 0.87716 1.25327 1.01049 0.96408 0.94864 1.69604 1.37065 1.41470 1.05332 0.85868 0.81643 0.78884 0.77558 1.19749 1.20827 1.19750 1.24206 1.00248 0.86073 0.92216 1.89695 1.95988 1.27697 1.17108 1.24197 1.00188 0.87204 0.92405 0.92701 0.92540 0.92262 0.91886 0.89676 0.88320 0.87977 0.75118 0.89893 0.89895 0.77038 0.91499 0.89719 0.88709 0.89378 0.89599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.30 9.14 37.15 0.34 -0.96 16 2 C -0.12 -1.20 5.45 -26.73 -0.15 -1.34 16 3 C -0.11 -1.09 0.72 -153.42 -0.11 -1.20 16 4 C -0.12 -1.29 5.13 -27.88 -0.14 -1.43 16 5 C 0.51 7.38 7.30 -10.99 -0.08 7.30 16 6 O -0.55 -9.09 13.22 5.56 0.07 -9.01 16 7 N -0.71 -11.19 5.53 -61.48 -0.34 -11.53 16 8 C 0.11 1.96 6.15 -5.20 -0.03 1.93 16 9 C 0.43 9.64 7.85 -10.98 -0.09 9.56 16 10 O -0.60 -15.11 15.24 5.54 0.08 -15.03 16 11 N -0.55 -13.47 5.29 -10.96 -0.06 -13.53 16 12 C -0.31 -8.29 9.68 -14.94 -0.14 -8.43 16 13 H 0.11 2.94 7.16 -52.48 -0.38 2.56 16 14 C 0.03 0.69 5.50 -17.47 -0.10 0.59 16 15 N -0.89 -23.75 13.05 55.50 0.72 -23.02 16 16 Si 0.93 20.40 29.55 -169.99 -5.02 15.38 16 17 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 18 H -0.28 -6.05 7.11 56.52 0.40 -5.64 16 19 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 20 C 0.05 0.57 7.42 37.64 0.28 0.85 16 21 O -0.39 -4.77 12.38 -35.23 -0.44 -5.20 16 22 C 0.04 0.34 8.13 37.64 0.31 0.64 16 23 H 0.05 0.39 6.07 -51.93 -0.32 0.07 16 24 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.06 0.51 6.07 -51.93 -0.32 0.19 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.08 1.05 6.48 -51.93 -0.34 0.72 16 28 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 29 H 0.10 1.04 8.08 -51.92 -0.42 0.62 16 30 H 0.41 6.41 7.44 -40.82 -0.30 6.10 16 31 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 32 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 33 H 0.40 9.35 7.90 -40.82 -0.32 9.03 16 34 H 0.28 6.91 8.31 -40.82 -0.34 6.57 16 35 H 0.08 0.89 5.83 -51.93 -0.30 0.59 16 36 H 0.09 1.25 7.12 -51.93 -0.37 0.88 16 37 H 0.09 0.67 8.10 -51.93 -0.42 0.25 16 38 H 0.09 0.66 5.83 -51.93 -0.30 0.35 16 LS Contribution 313.13 15.07 4.72 4.72 Total: -1.00 -30.61 313.13 -5.20 -35.81 By element: Atomic # 1 Polarization: 18.93 SS G_CDS: -5.03 Total: 13.90 kcal Atomic # 6 Polarization: 7.42 SS G_CDS: 0.09 Total: 7.51 kcal Atomic # 7 Polarization: -48.41 SS G_CDS: 0.33 Total: -48.08 kcal Atomic # 8 Polarization: -28.96 SS G_CDS: -0.28 Total: -29.24 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.61 -5.20 -35.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935963098.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.800 kcal (2) G-P(sol) polarization free energy of solvation -30.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds