Wall clock time and date at job start Mon Mar 30 2020 01:00:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47297 * 2 1 4 4 C 1.52999 * 112.99827 * 179.97438 * 3 2 1 5 5 C 1.50699 * 109.47254 * 294.74092 * 4 3 2 6 6 O 1.21282 * 119.99900 * 354.23912 * 5 4 3 7 7 N 1.34777 * 120.00057 * 174.24133 * 5 4 3 8 8 C 1.46496 * 120.00223 * 179.97438 * 7 5 4 9 9 C 1.50700 * 109.47247 * 179.97438 * 8 7 5 10 10 O 1.21299 * 119.99839 * 0.02562 * 9 8 7 11 11 N 1.34778 * 119.99966 * 180.02562 * 9 8 7 12 12 C 1.37094 * 119.99980 * 180.02562 * 11 9 8 13 13 H 1.08006 * 119.99678 * 0.02562 * 12 11 9 14 14 C 1.38948 * 120.00271 * 180.02562 * 12 11 9 15 15 N 1.31409 * 119.99898 * 359.97438 * 14 12 11 16 16 Si 1.86806 * 120.00204 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.46823 * 59.99744 * 16 14 12 18 18 H 1.48497 * 109.46790 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.46673 * 299.99588 * 16 14 12 20 20 C 1.54038 * 113.81243 * 48.17489 * 3 2 1 21 21 O 1.44447 * 85.42363 * 223.23848 * 20 3 2 22 22 C 1.44179 * 93.38283 * 24.08590 * 21 20 3 23 23 H 1.09000 * 109.47254 * 59.99717 * 1 2 3 24 24 H 1.09004 * 109.47581 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47618 * 300.00375 * 1 2 3 26 26 H 1.08997 * 109.47099 * 240.00088 * 2 1 3 27 27 H 1.09000 * 109.46838 * 119.99944 * 2 1 3 28 28 H 1.08996 * 109.47045 * 54.74374 * 4 3 2 29 29 H 1.09009 * 109.46701 * 174.74221 * 4 3 2 30 30 H 0.97007 * 119.99665 * 0.02562 * 7 5 4 31 31 H 1.08995 * 109.47207 * 299.99873 * 8 7 5 32 32 H 1.09001 * 109.46759 * 60.00349 * 8 7 5 33 33 H 0.96993 * 119.99887 * 0.02562 * 11 9 8 34 34 H 0.97003 * 120.00147 * 179.97438 * 15 14 12 35 35 H 1.08998 * 113.86903 * 337.34057 * 20 3 2 36 36 H 1.08996 * 113.86914 * 109.05112 * 20 3 2 37 37 H 1.08995 * 113.87194 * 221.76987 * 22 21 20 38 38 H 1.09006 * 113.85923 * 90.06112 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5671 1.5366 0.0006 5 6 4.1045 0.9742 1.2913 6 8 3.3403 0.6374 2.1708 7 7 5.4344 0.8455 1.4683 8 6 5.9569 0.2993 2.7232 9 6 7.4623 0.2606 2.6660 10 8 8.0418 0.6514 1.6746 11 7 8.1648 -0.2082 3.7164 12 6 9.5343 -0.2429 3.6646 13 1 10.0503 0.1059 2.7822 14 6 10.2585 -0.7266 4.7472 15 7 9.6307 -1.1504 5.8211 16 14 12.1247 -0.7732 4.6769 17 1 12.6471 0.6031 4.4819 18 1 12.6542 -1.3277 5.9486 19 1 12.5559 -1.6316 3.5445 20 6 1.3613 2.3421 1.0501 21 8 1.3053 3.3305 -0.0018 22 6 1.3614 2.3422 -1.0501 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8932 -0.5138 0.8900 28 1 3.9665 0.9667 -0.8383 29 1 3.8668 2.5804 -0.0936 30 1 6.0456 1.1153 0.7650 31 1 5.6406 0.9303 3.5537 32 1 5.5731 -0.7107 2.8675 33 1 7.7013 -0.5210 4.5090 34 1 10.1363 -1.4885 6.5768 35 1 0.3832 1.9843 1.3715 36 1 2.0107 2.6171 1.8812 37 1 2.0108 2.6171 -1.8811 38 1 0.3832 1.9843 -1.3715 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000935963098.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:22 Heat of formation + Delta-G solvation = -117.955330 kcal Electronic energy + Delta-G solvation = -20615.749624 eV Core-core repulsion = 17265.360534 eV Total energy + Delta-G solvation = -3350.389091 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.11515 -40.68037 -39.68639 -36.26098 -35.32623 -34.90993 -33.39261 -31.86471 -29.33333 -27.51124 -27.25717 -26.09244 -24.38225 -21.64798 -21.38201 -20.11983 -19.43331 -18.47432 -17.41579 -17.32754 -17.11548 -16.82342 -16.67939 -16.35848 -16.22348 -15.64554 -15.56336 -14.81033 -14.69293 -14.21238 -13.97681 -13.82005 -13.54598 -13.46463 -13.00961 -12.88164 -12.79776 -12.48145 -12.16166 -12.14295 -12.12135 -11.57120 -11.44532 -11.20555 -10.83014 -10.57114 -10.38109 -10.16921 -10.07735 -8.52041 -6.02522 1.37416 1.42229 1.53121 1.62926 1.90563 2.03111 2.31405 2.80955 3.11235 3.15179 3.26278 3.60962 3.87538 4.04224 4.21555 4.22866 4.29550 4.42403 4.45032 4.56880 4.60470 4.62050 4.66524 4.75290 4.79929 5.08242 5.16478 5.22644 5.26560 5.30317 5.36673 5.38740 5.49116 5.90697 6.45375 6.55782 7.02344 7.20171 7.43499 7.93389 8.64633 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.048281 B = 0.003135 C = 0.003069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.805043 B = 8929.340100 C = 9120.915563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.118 4.118 3 C -0.106 4.106 4 C -0.114 4.114 5 C 0.513 3.487 6 O -0.569 6.569 7 N -0.711 5.711 8 C 0.123 3.877 9 C 0.431 3.569 10 O -0.624 6.624 11 N -0.560 5.560 12 C -0.339 4.339 13 H 0.087 0.913 14 C -0.010 4.010 15 N -0.917 5.917 16 Si 0.997 3.003 17 H -0.270 1.270 18 H -0.272 1.272 19 H -0.269 1.269 20 C 0.043 3.957 21 O -0.409 6.409 22 C 0.044 3.956 23 H 0.071 0.929 24 H 0.061 0.939 25 H 0.052 0.948 26 H 0.077 0.923 27 H 0.056 0.944 28 H 0.125 0.875 29 H 0.110 0.890 30 H 0.413 0.587 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.398 0.602 34 H 0.280 0.720 35 H 0.094 0.906 36 H 0.072 0.928 37 H 0.107 0.893 38 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.870 2.641 -11.375 19.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.156 4.156 3 C -0.106 4.106 4 C -0.154 4.154 5 C 0.301 3.699 6 O -0.448 6.448 7 N -0.365 5.365 8 C -0.005 4.005 9 C 0.218 3.782 10 O -0.512 6.512 11 N -0.195 5.195 12 C -0.469 4.469 13 H 0.105 0.895 14 C -0.211 4.211 15 N -0.557 5.557 16 Si 0.820 3.180 17 H -0.195 1.195 18 H -0.196 1.196 19 H -0.194 1.194 20 C -0.033 4.033 21 O -0.328 6.328 22 C -0.032 4.032 23 H 0.090 0.910 24 H 0.080 0.920 25 H 0.071 0.929 26 H 0.095 0.905 27 H 0.075 0.925 28 H 0.143 0.857 29 H 0.128 0.872 30 H 0.251 0.749 31 H 0.109 0.891 32 H 0.111 0.889 33 H 0.233 0.767 34 H 0.090 0.910 35 H 0.111 0.889 36 H 0.091 0.909 37 H 0.125 0.875 38 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -15.953 2.854 -11.192 19.696 hybrid contribution 1.146 -0.340 0.626 1.349 sum -14.808 2.514 -10.565 18.364 Atomic orbital electron populations 1.21951 0.94681 1.02346 1.02196 1.21506 0.96873 0.94589 1.02603 1.23281 0.93949 0.97082 0.96308 1.21492 0.94535 1.04140 0.95205 1.21097 0.81114 0.77595 0.90097 1.90659 1.57377 1.51261 1.45541 1.45804 1.07652 1.64632 1.18421 1.20729 0.90014 1.01129 0.88652 1.20483 0.89825 0.83557 0.84287 1.90472 1.72147 1.54763 1.33863 1.41849 1.06867 1.54939 1.15849 1.19715 0.82184 1.42046 1.02929 0.89547 1.26129 1.05301 0.95463 0.94172 1.69672 1.38658 1.41581 1.05739 0.84933 0.76263 0.78897 0.77943 1.19498 1.19629 1.19401 1.24205 1.00557 0.86568 0.91970 1.89674 1.96137 1.28908 1.18106 1.24397 1.01342 0.85568 0.91916 0.91009 0.92016 0.92948 0.90487 0.92502 0.85720 0.87151 0.74875 0.89120 0.88889 0.76745 0.91042 0.88868 0.90939 0.87455 0.87774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 9.14 71.98 0.66 -1.59 16 2 C -0.12 -2.13 5.45 30.59 0.17 -1.96 16 3 C -0.11 -1.98 0.72 -51.48 -0.04 -2.02 16 4 C -0.11 -2.23 5.13 29.85 0.15 -2.08 16 5 C 0.51 14.28 7.30 87.66 0.64 14.92 16 6 O -0.57 -18.75 13.22 -3.04 -0.04 -18.79 16 7 N -0.71 -21.93 5.53 -466.80 -2.58 -24.51 16 8 C 0.12 4.35 6.15 85.63 0.53 4.88 16 9 C 0.43 19.64 7.85 87.66 0.69 20.33 16 10 O -0.62 -31.81 15.24 -3.09 -0.05 -31.86 16 11 N -0.56 -27.93 5.29 -306.98 -1.62 -29.55 16 12 C -0.34 -18.62 9.68 84.04 0.81 -17.81 16 13 H 0.09 4.97 7.16 -2.91 -0.02 4.95 16 14 C -0.01 -0.51 5.50 84.93 0.47 -0.05 16 15 N -0.92 -48.56 13.05 21.66 0.28 -48.28 16 16 Si 1.00 41.49 29.55 68.60 2.03 43.52 16 17 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 18 H -0.27 -10.73 7.11 99.48 0.71 -10.03 16 19 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 20 C 0.04 0.98 7.42 72.30 0.54 1.51 16 21 O -0.41 -9.45 12.38 -148.98 -1.84 -11.29 16 22 C 0.04 0.67 8.13 72.30 0.59 1.26 16 23 H 0.07 0.80 6.07 -2.39 -0.01 0.78 16 24 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.05 0.83 6.07 -2.39 -0.01 0.81 16 26 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.06 1.36 6.48 -2.39 -0.02 1.35 16 28 H 0.12 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.11 2.03 8.08 -2.38 -0.02 2.01 16 30 H 0.41 12.55 7.44 -92.70 -0.69 11.86 16 31 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16 32 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16 33 H 0.40 19.13 7.90 -92.71 -0.73 18.40 16 34 H 0.28 13.91 8.31 -92.71 -0.77 13.14 16 35 H 0.09 1.90 5.83 -2.39 -0.01 1.88 16 36 H 0.07 1.94 7.12 -2.39 -0.02 1.92 16 37 H 0.11 1.25 8.10 -2.39 -0.02 1.23 16 38 H 0.10 1.22 5.83 -2.38 -0.01 1.21 16 Total: -1.00 -65.61 313.13 1.06 -64.55 By element: Atomic # 1 Polarization: 39.12 SS G_CDS: -0.32 Total: 38.81 kcal Atomic # 6 Polarization: 12.20 SS G_CDS: 5.20 Total: 17.40 kcal Atomic # 7 Polarization: -98.42 SS G_CDS: -3.92 Total: -102.34 kcal Atomic # 8 Polarization: -60.01 SS G_CDS: -1.93 Total: -61.94 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 2.03 Total: 43.52 kcal Total: -65.61 1.06 -64.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935963098.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.403 kcal (2) G-P(sol) polarization free energy of solvation -65.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds