Wall clock time and date at job start Mon Mar 30 2020 00:53:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86804 * 119.99900 * 2 1 4 4 H 1.48495 * 109.46849 * 240.00254 * 3 2 1 5 5 H 1.48505 * 109.47011 * 0.02562 * 3 2 1 6 6 H 1.48491 * 109.46879 * 119.99597 * 3 2 1 7 7 C 1.38812 * 119.99813 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99308 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00187 * 359.97438 * 7 2 1 10 10 C 1.46497 * 119.99846 * 180.02562 * 9 7 2 11 11 H 1.09000 * 112.85260 * 336.19164 * 10 9 7 12 12 C 1.53955 * 113.74676 * 107.40245 * 10 9 7 13 13 C 1.53782 * 87.02215 * 139.93996 * 12 10 9 14 14 H 1.08996 * 113.61213 * 89.22817 * 13 12 10 15 15 N 1.46493 * 113.61748 * 220.04861 * 13 12 10 16 16 C 1.34778 * 120.00134 * 254.13933 * 15 13 12 17 17 O 1.21271 * 119.99746 * 359.97438 * 16 15 13 18 18 C 1.50697 * 119.99831 * 180.02562 * 16 15 13 19 19 H 1.09003 * 109.57937 * 304.83444 * 18 16 15 20 20 C 1.53146 * 109.52727 * 65.00026 * 18 16 15 21 21 O 1.43070 * 109.15222 * 175.21406 * 20 18 16 22 22 C 1.43073 * 113.59263 * 302.04630 * 21 20 18 23 23 C 1.53146 * 109.15311 * 57.95215 * 22 21 20 24 24 O 1.43073 * 109.52342 * 184.67237 * 18 16 15 25 25 C 1.53780 * 113.61270 * 205.00293 * 10 9 7 26 26 H 0.96999 * 119.99949 * 0.02562 * 1 2 3 27 27 H 0.96999 * 119.99664 * 0.02562 * 9 7 2 28 28 H 1.09009 * 113.60860 * 25.42606 * 12 10 9 29 29 H 1.08998 * 113.66542 * 254.47458 * 12 10 9 30 30 H 0.97011 * 119.99812 * 74.13814 * 15 13 12 31 31 H 1.09004 * 109.52009 * 295.11503 * 20 18 16 32 32 H 1.08994 * 109.52110 * 55.24700 * 20 18 16 33 33 H 1.09006 * 109.53017 * 177.85285 * 22 21 20 34 34 H 1.09001 * 109.52692 * 297.98822 * 22 21 20 35 35 H 1.09007 * 109.52339 * 64.58822 * 23 22 21 36 36 H 1.08994 * 109.52563 * 184.78702 * 23 22 21 37 37 H 1.08998 * 113.61875 * 105.38531 * 25 10 9 38 38 H 1.09005 * 113.61666 * 334.48102 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1038 1.6964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0005 11 1 3.0656 -3.5638 -0.4060 12 6 2.0031 -4.4044 1.3442 13 6 1.8498 -5.6981 0.5271 14 1 2.7996 -6.1644 0.2654 15 7 0.8905 -6.6447 1.1014 16 6 1.3308 -7.7572 1.7220 17 8 2.5209 -7.9747 1.8046 18 6 0.3439 -8.7312 2.3123 19 1 -0.3133 -8.2091 3.0077 20 6 -0.4907 -9.3570 1.1911 21 8 -1.3462 -10.3602 1.7468 22 6 -0.6411 -11.3942 2.4401 23 6 0.1936 -10.7685 3.5613 24 8 1.0490 -9.7652 3.0056 25 6 1.2602 -4.8287 -0.5961 26 1 -0.4850 0.8400 -0.0004 27 1 0.3556 -2.3880 -0.0005 28 1 1.1262 -4.1602 1.9439 29 1 2.9325 -4.3536 1.9113 30 1 -0.0616 -6.4709 1.0351 31 1 -1.0956 -8.5861 0.7136 32 1 0.1716 -9.8097 0.4532 33 1 -1.3548 -12.0988 2.8671 34 1 0.0153 -11.9171 1.7445 35 1 -0.4687 -10.3148 4.2987 36 1 0.7984 -11.5393 4.0388 37 1 1.5908 -5.1202 -1.5930 38 1 0.1798 -4.7008 -0.5279 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021848362.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:06 Heat of formation + Delta-G solvation = -88.375329 kcal Electronic energy + Delta-G solvation = -20605.169214 eV Core-core repulsion = 17256.062809 eV Total energy + Delta-G solvation = -3349.106406 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.72112 -39.40796 -37.86643 -36.30883 -34.17422 -33.01054 -31.78594 -29.90774 -28.44952 -25.54404 -25.16727 -24.41179 -22.72754 -21.70885 -20.51487 -19.38746 -17.75486 -17.36032 -17.04837 -16.82678 -16.31361 -15.94198 -15.68512 -15.05984 -14.60470 -14.36058 -14.30364 -13.75728 -13.43519 -13.06175 -12.86571 -12.68898 -12.20019 -11.96226 -11.93812 -11.29130 -11.21666 -10.98759 -10.92822 -10.63732 -10.53975 -10.36138 -10.09870 -9.80471 -9.65337 -9.49469 -8.94281 -8.82977 -7.01408 -5.82354 -3.11413 2.47719 2.66832 3.27073 3.42132 3.46658 3.47472 3.69760 4.13828 4.48747 4.52006 4.57234 4.58518 4.71017 4.82141 4.99601 5.04704 5.16750 5.19830 5.31733 5.34040 5.37086 5.44632 5.83019 5.89281 6.07210 6.21362 6.27026 6.40064 6.49663 6.56739 6.59859 6.68802 7.02531 7.50356 7.66534 8.16922 8.36186 9.47539 10.03697 10.38230 11.39960 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.046984 B = 0.003092 C = 0.003026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.809744 B = 9054.259348 C = 9251.580056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.012 4.012 3 Si 0.909 3.091 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.246 4.246 8 H 0.072 0.928 9 N -0.710 5.710 10 C 0.169 3.831 11 H 0.080 0.920 12 C -0.177 4.177 13 C 0.118 3.882 14 H 0.110 0.890 15 N -0.710 5.710 16 C 0.520 3.480 17 O -0.519 6.519 18 C 0.036 3.964 19 H 0.095 0.905 20 C 0.038 3.962 21 O -0.373 6.373 22 C 0.020 3.980 23 C 0.023 3.977 24 O -0.350 6.350 25 C -0.158 4.158 26 H 0.256 0.744 27 H 0.385 0.615 28 H 0.080 0.920 29 H 0.060 0.940 30 H 0.400 0.600 31 H 0.113 0.887 32 H 0.069 0.931 33 H 0.108 0.892 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.110 0.890 37 H 0.068 0.932 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.299 -21.813 3.784 22.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.208 4.208 3 Si 0.739 3.261 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.377 4.377 8 H 0.090 0.910 9 N -0.348 5.348 10 C 0.056 3.944 11 H 0.098 0.902 12 C -0.219 4.219 13 C 0.014 3.986 14 H 0.128 0.872 15 N -0.362 5.362 16 C 0.304 3.696 17 O -0.394 6.394 18 C -0.026 4.026 19 H 0.112 0.888 20 C -0.040 4.040 21 O -0.292 6.292 22 C -0.057 4.057 23 C -0.054 4.054 24 O -0.268 6.268 25 C -0.198 4.198 26 H 0.066 0.934 27 H 0.219 0.781 28 H 0.099 0.901 29 H 0.079 0.921 30 H 0.235 0.765 31 H 0.131 0.869 32 H 0.087 0.913 33 H 0.126 0.874 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.128 0.872 37 H 0.087 0.913 38 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -2.307 -21.784 3.826 22.237 hybrid contribution -0.417 0.940 0.174 1.043 sum -2.724 -20.843 4.000 21.398 Atomic orbital electron populations 1.69646 1.05158 1.25938 1.57386 1.24768 0.95540 0.97827 1.02675 0.86247 0.78542 0.83353 0.77930 1.21164 1.21672 1.21188 1.19273 0.91142 0.84144 1.43124 0.91012 1.42340 1.05682 0.99750 1.86979 1.21372 0.95515 0.84928 0.92570 0.90168 1.24382 1.01958 0.95011 1.00589 1.22550 0.93138 0.87257 0.95632 0.87228 1.45993 1.10625 1.22082 1.57487 1.19869 0.89154 0.81780 0.78789 1.90724 1.16564 1.75256 1.56816 1.22632 0.93768 0.90186 0.95990 0.88756 1.23154 0.94229 0.92286 0.94311 1.88124 1.32648 1.35958 1.72466 1.23324 0.97102 0.90492 0.94733 1.23350 0.94691 0.91881 0.95515 1.88243 1.31587 1.35120 1.71883 1.23868 1.01266 0.97224 0.97403 0.93373 0.78076 0.90147 0.92128 0.76548 0.86924 0.91290 0.87434 0.91789 0.91792 0.87187 0.91343 0.89860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.67 13.06 55.49 0.72 -26.95 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 22.13 29.55 -169.99 -5.02 17.11 16 4 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.25 -6.71 9.97 -15.06 -0.15 -6.86 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 N -0.71 -17.24 5.41 -52.55 -0.28 -17.53 16 10 C 0.17 3.22 4.48 -67.03 -0.30 2.92 16 11 H 0.08 1.53 8.10 -51.93 -0.42 1.10 16 12 C -0.18 -3.05 7.70 -25.83 -0.20 -3.25 16 13 C 0.12 1.72 4.21 -67.12 -0.28 1.44 16 14 H 0.11 1.68 7.50 -51.93 -0.39 1.29 16 15 N -0.71 -8.71 5.32 -53.02 -0.28 -8.99 16 16 C 0.52 7.20 7.18 -10.99 -0.08 7.12 16 17 O -0.52 -9.49 16.13 -14.25 -0.23 -9.72 16 18 C 0.04 0.39 3.25 -27.81 -0.09 0.30 16 19 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 20 C 0.04 0.34 6.29 37.23 0.23 0.58 16 21 O -0.37 -3.56 10.85 -48.80 -0.53 -4.09 16 22 C 0.02 0.15 7.05 37.23 0.26 0.41 16 23 C 0.02 0.18 7.05 37.23 0.26 0.44 16 24 O -0.35 -4.35 10.03 -62.51 -0.63 -4.98 16 25 C -0.16 -2.37 7.58 -25.92 -0.20 -2.56 16 26 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 27 H 0.39 9.83 7.92 -40.82 -0.32 9.51 16 28 H 0.08 1.45 8.14 -51.92 -0.42 1.03 16 29 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.40 3.81 8.62 -40.82 -0.35 3.46 16 31 H 0.11 0.79 8.05 -51.93 -0.42 0.37 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.11 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 38 H 0.08 1.22 8.09 -51.93 -0.42 0.80 16 LS Contribution 319.64 15.07 4.82 4.82 Total: -1.00 -33.75 319.64 -7.74 -41.49 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: -5.67 Total: 8.73 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: -0.63 Total: 0.10 kcal Atomic # 7 Polarization: -53.62 SS G_CDS: 0.16 Total: -53.46 kcal Atomic # 8 Polarization: -17.41 SS G_CDS: -1.39 Total: -18.79 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -33.75 -7.74 -41.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021848362.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.880 kcal (2) G-P(sol) polarization free energy of solvation -33.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds