Wall clock time and date at job start Mon Mar 30 2020 00:53:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86804 * 119.99900 * 2 1 4 4 H 1.48495 * 109.46849 * 240.00254 * 3 2 1 5 5 H 1.48505 * 109.47011 * 0.02562 * 3 2 1 6 6 H 1.48491 * 109.46879 * 119.99597 * 3 2 1 7 7 C 1.38812 * 119.99813 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99308 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00187 * 359.97438 * 7 2 1 10 10 C 1.46497 * 119.99846 * 180.02562 * 9 7 2 11 11 H 1.09000 * 112.85260 * 336.19164 * 10 9 7 12 12 C 1.53955 * 113.74676 * 107.40245 * 10 9 7 13 13 C 1.53782 * 87.02215 * 139.93996 * 12 10 9 14 14 H 1.08996 * 113.61213 * 89.22817 * 13 12 10 15 15 N 1.46493 * 113.61748 * 220.04861 * 13 12 10 16 16 C 1.34778 * 120.00134 * 254.13933 * 15 13 12 17 17 O 1.21271 * 119.99746 * 359.97438 * 16 15 13 18 18 C 1.50697 * 119.99831 * 180.02562 * 16 15 13 19 19 H 1.09003 * 109.57937 * 304.83444 * 18 16 15 20 20 C 1.53146 * 109.52727 * 65.00026 * 18 16 15 21 21 O 1.43070 * 109.15222 * 175.21406 * 20 18 16 22 22 C 1.43073 * 113.59263 * 302.04630 * 21 20 18 23 23 C 1.53146 * 109.15311 * 57.95215 * 22 21 20 24 24 O 1.43073 * 109.52342 * 184.67237 * 18 16 15 25 25 C 1.53780 * 113.61270 * 205.00293 * 10 9 7 26 26 H 0.96999 * 119.99949 * 0.02562 * 1 2 3 27 27 H 0.96999 * 119.99664 * 0.02562 * 9 7 2 28 28 H 1.09009 * 113.60860 * 25.42606 * 12 10 9 29 29 H 1.08998 * 113.66542 * 254.47458 * 12 10 9 30 30 H 0.97011 * 119.99812 * 74.13814 * 15 13 12 31 31 H 1.09004 * 109.52009 * 295.11503 * 20 18 16 32 32 H 1.08994 * 109.52110 * 55.24700 * 20 18 16 33 33 H 1.09006 * 109.53017 * 177.85285 * 22 21 20 34 34 H 1.09001 * 109.52692 * 297.98822 * 22 21 20 35 35 H 1.09007 * 109.52339 * 64.58822 * 23 22 21 36 36 H 1.08994 * 109.52563 * 184.78702 * 23 22 21 37 37 H 1.08998 * 113.61875 * 105.38531 * 25 10 9 38 38 H 1.09005 * 113.61666 * 334.48102 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1038 1.6964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0005 11 1 3.0656 -3.5638 -0.4060 12 6 2.0031 -4.4044 1.3442 13 6 1.8498 -5.6981 0.5271 14 1 2.7996 -6.1644 0.2654 15 7 0.8905 -6.6447 1.1014 16 6 1.3308 -7.7572 1.7220 17 8 2.5209 -7.9747 1.8046 18 6 0.3439 -8.7312 2.3123 19 1 -0.3133 -8.2091 3.0077 20 6 -0.4907 -9.3570 1.1911 21 8 -1.3462 -10.3602 1.7468 22 6 -0.6411 -11.3942 2.4401 23 6 0.1936 -10.7685 3.5613 24 8 1.0490 -9.7652 3.0056 25 6 1.2602 -4.8287 -0.5961 26 1 -0.4850 0.8400 -0.0004 27 1 0.3556 -2.3880 -0.0005 28 1 1.1262 -4.1602 1.9439 29 1 2.9325 -4.3536 1.9113 30 1 -0.0616 -6.4709 1.0351 31 1 -1.0956 -8.5861 0.7136 32 1 0.1716 -9.8097 0.4532 33 1 -1.3548 -12.0988 2.8671 34 1 0.0153 -11.9171 1.7445 35 1 -0.4687 -10.3148 4.2987 36 1 0.7984 -11.5393 4.0388 37 1 1.5908 -5.1202 -1.5930 38 1 0.1798 -4.7008 -0.5279 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021848362.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:05 Heat of formation + Delta-G solvation = -113.739513 kcal Electronic energy + Delta-G solvation = -20606.269088 eV Core-core repulsion = 17256.062809 eV Total energy + Delta-G solvation = -3350.206279 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.64423 -40.46667 -39.14781 -37.08198 -35.79840 -34.48201 -32.72687 -31.66590 -29.23339 -26.61947 -26.51534 -25.94152 -24.00363 -22.66317 -21.60575 -20.79357 -19.22282 -18.59784 -18.16926 -17.63062 -17.18504 -16.99490 -16.52300 -16.29167 -16.08972 -15.78141 -15.40326 -14.94021 -14.76828 -14.47962 -14.08030 -13.66713 -13.30037 -13.26684 -13.14412 -12.79750 -12.64533 -12.28397 -12.19787 -12.08355 -11.91284 -11.76693 -11.62537 -11.49842 -10.88725 -10.80086 -10.30235 -10.05759 -8.98309 -7.94962 -5.22819 1.40399 1.48628 1.50803 1.56723 1.72821 2.57012 2.63313 2.89196 3.36483 3.40917 3.59352 3.69958 3.80944 3.85562 3.95850 3.97577 4.12759 4.22767 4.27831 4.31668 4.47186 4.53604 4.71486 4.77622 4.79694 4.89595 4.91290 5.11945 5.15913 5.33783 5.50512 5.64096 5.85099 5.87655 6.27676 6.48281 7.12421 7.34460 8.10131 8.33556 9.27881 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.046984 B = 0.003092 C = 0.003026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.809744 B = 9054.259348 C = 9251.580056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.073 4.073 3 Si 0.970 3.030 4 H -0.277 1.277 5 H -0.295 1.295 6 H -0.281 1.281 7 C -0.247 4.247 8 H 0.075 0.925 9 N -0.723 5.723 10 C 0.149 3.851 11 H 0.078 0.922 12 C -0.172 4.172 13 C 0.136 3.864 14 H 0.106 0.894 15 N -0.696 5.696 16 C 0.521 3.479 17 O -0.568 6.568 18 C 0.040 3.960 19 H 0.113 0.887 20 C 0.042 3.958 21 O -0.384 6.384 22 C 0.017 3.983 23 C 0.018 3.982 24 O -0.385 6.385 25 C -0.136 4.136 26 H 0.252 0.748 27 H 0.376 0.624 28 H 0.073 0.927 29 H 0.051 0.949 30 H 0.417 0.583 31 H 0.135 0.865 32 H 0.062 0.938 33 H 0.135 0.865 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.127 0.873 37 H 0.085 0.915 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.823 -23.079 3.772 23.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.266 4.266 3 Si 0.799 3.201 4 H -0.203 1.203 5 H -0.222 1.222 6 H -0.207 1.207 7 C -0.379 4.379 8 H 0.093 0.907 9 N -0.360 5.360 10 C 0.038 3.962 11 H 0.096 0.904 12 C -0.215 4.215 13 C 0.031 3.969 14 H 0.124 0.876 15 N -0.349 5.349 16 C 0.306 3.694 17 O -0.446 6.446 18 C -0.021 4.021 19 H 0.130 0.870 20 C -0.035 4.035 21 O -0.303 6.303 22 C -0.059 4.059 23 C -0.059 4.059 24 O -0.304 6.304 25 C -0.176 4.176 26 H 0.060 0.940 27 H 0.209 0.791 28 H 0.091 0.909 29 H 0.070 0.930 30 H 0.254 0.746 31 H 0.153 0.847 32 H 0.080 0.920 33 H 0.153 0.847 34 H 0.081 0.919 35 H 0.091 0.909 36 H 0.145 0.855 37 H 0.104 0.896 38 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.837 -23.097 3.813 23.581 hybrid contribution -0.213 1.219 0.228 1.259 sum -3.049 -21.878 4.041 22.456 Atomic orbital electron populations 1.69787 1.06463 1.26161 1.59402 1.25522 0.96381 1.00962 1.03694 0.85262 0.77260 0.79427 0.78126 1.20339 1.22161 1.20705 1.19658 0.91547 0.85449 1.41215 0.90701 1.42478 1.05411 1.00720 1.87438 1.21697 0.95829 0.84227 0.94413 0.90385 1.24226 1.01241 0.96402 0.99584 1.22184 0.93564 0.86674 0.94467 0.87632 1.45808 1.11176 1.21224 1.56668 1.20421 0.89002 0.82036 0.77905 1.90701 1.18798 1.76399 1.58740 1.22640 0.92836 0.89744 0.96880 0.87001 1.23179 0.94199 0.92789 0.93361 1.88114 1.33147 1.36324 1.72671 1.23506 0.97660 0.90303 0.94416 1.23612 0.94865 0.91481 0.95897 1.88192 1.33677 1.36177 1.72397 1.23659 1.01218 0.94478 0.98207 0.93973 0.79097 0.90859 0.93012 0.74588 0.84701 0.91957 0.84747 0.91877 0.90853 0.85483 0.89611 0.88944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.98 13.06 21.65 0.28 -57.70 16 2 C -0.07 -4.14 5.50 84.86 0.47 -3.67 16 3 Si 0.97 45.65 29.55 68.60 2.03 47.68 16 4 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 5 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 6 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 7 C -0.25 -13.48 9.97 84.03 0.84 -12.64 16 8 H 0.08 3.94 7.83 -2.91 -0.02 3.92 16 9 N -0.72 -35.08 5.41 -320.18 -1.73 -36.82 16 10 C 0.15 5.57 4.48 45.58 0.20 5.77 16 11 H 0.08 2.93 8.10 -2.39 -0.02 2.92 16 12 C -0.17 -5.84 7.70 31.18 0.24 -5.60 16 13 C 0.14 3.77 4.21 45.52 0.19 3.96 16 14 H 0.11 3.11 7.50 -2.39 -0.02 3.10 16 15 N -0.70 -15.77 5.32 -440.05 -2.34 -18.12 16 16 C 0.52 13.79 7.18 87.66 0.63 14.42 16 17 O -0.57 -20.68 16.13 15.95 0.26 -20.42 16 18 C 0.04 0.82 3.25 29.90 0.10 0.91 16 19 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 20 C 0.04 0.67 6.29 72.03 0.45 1.13 16 21 O -0.38 -6.37 10.85 -136.00 -1.48 -7.85 16 22 C 0.02 0.21 7.05 72.03 0.51 0.72 16 23 C 0.02 0.25 7.05 72.03 0.51 0.75 16 24 O -0.39 -9.15 10.03 -122.90 -1.23 -10.38 16 25 C -0.14 -3.82 7.58 31.12 0.24 -3.59 16 26 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 27 H 0.38 19.30 7.92 -92.71 -0.73 18.57 16 28 H 0.07 2.60 8.14 -2.38 -0.02 2.58 16 29 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.42 6.83 8.62 -92.70 -0.80 6.03 16 31 H 0.14 1.47 8.05 -2.39 -0.02 1.45 16 32 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.13 0.89 8.14 -2.38 -0.02 0.87 16 34 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 36 H 0.13 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.09 2.16 8.14 -2.39 -0.02 2.15 16 38 H 0.09 2.48 8.09 -2.38 -0.02 2.46 16 Total: -1.00 -72.92 319.64 -0.30 -73.22 By element: Atomic # 1 Polarization: 28.67 SS G_CDS: -0.46 Total: 28.22 kcal Atomic # 6 Polarization: -2.21 SS G_CDS: 4.37 Total: 2.16 kcal Atomic # 7 Polarization: -108.84 SS G_CDS: -3.79 Total: -112.63 kcal Atomic # 8 Polarization: -36.19 SS G_CDS: -2.45 Total: -38.64 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Total: -72.92 -0.30 -73.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021848362.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.518 kcal (2) G-P(sol) polarization free energy of solvation -72.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds