Wall clock time and date at job start Mon Mar 30 2020 00:52:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 120.00003 * 2 1 4 4 H 1.48500 * 109.47055 * 269.99946 * 3 2 1 5 5 H 1.48500 * 109.47098 * 29.99712 * 3 2 1 6 6 H 1.48500 * 109.47159 * 149.99499 * 3 2 1 7 7 C 1.38815 * 120.00151 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00107 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99934 * 0.02562 * 7 2 1 10 10 C 1.47586 * 134.49270 * 179.97438 * 9 7 2 11 11 C 1.53943 * 86.11723 * 155.35586 * 10 9 7 12 12 N 1.46501 * 113.74291 * 137.95210 * 11 10 9 13 13 C 1.34770 * 120.00013 * 156.92285 * 12 11 10 14 14 O 1.21281 * 119.99965 * 0.02562 * 13 12 11 15 15 C 1.50697 * 120.00148 * 180.02562 * 13 12 11 16 16 C 1.52995 * 109.47391 * 180.02562 * 15 13 12 17 17 O 1.42967 * 109.47161 * 175.00116 * 16 15 13 18 18 C 1.43095 * 113.77014 * 178.79211 * 17 16 15 19 19 C 1.53261 * 108.94358 * 302.02838 * 18 17 16 20 20 C 1.53259 * 108.84186 * 54.52606 * 19 18 17 21 21 O 1.42968 * 109.47265 * 294.99606 * 16 15 13 22 22 C 1.47807 * 134.45889 * 359.86307 * 9 7 2 23 23 H 0.97002 * 120.00065 * 0.02562 * 1 2 3 24 24 H 1.09003 * 113.76333 * 41.05092 * 10 9 7 25 25 H 1.08996 * 113.76622 * 269.66024 * 10 9 7 26 26 H 1.09003 * 113.73713 * 269.15733 * 11 10 9 27 27 H 0.96996 * 119.99559 * 336.92732 * 12 11 10 28 28 H 1.09006 * 109.47218 * 59.99878 * 15 13 12 29 29 H 1.09008 * 109.47128 * 300.00317 * 15 13 12 30 30 H 1.08998 * 109.47129 * 54.99933 * 16 15 13 31 31 H 1.08997 * 109.55621 * 61.86774 * 18 17 16 32 32 H 1.08999 * 109.55712 * 182.08124 * 18 17 16 33 33 H 1.08997 * 109.57207 * 174.33189 * 19 18 17 34 34 H 1.08998 * 109.57441 * 294.58821 * 19 18 17 35 35 H 1.08994 * 109.56239 * 65.31171 * 20 19 18 36 36 H 1.08999 * 109.55602 * 185.64189 * 20 19 18 37 37 H 1.08999 * 113.77040 * 90.37985 * 22 9 7 38 38 H 1.09008 * 113.83656 * 318.92200 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 1.7202 -3.8102 0.0005 11 6 0.3472 -4.0830 0.6410 12 7 -0.3332 -5.2614 0.0982 13 6 -1.2730 -5.8932 0.8289 14 8 -1.5558 -5.4858 1.9357 15 6 -1.9725 -7.1057 0.2708 16 6 -2.9846 -7.6263 1.2932 17 8 -3.7295 -8.7037 0.7203 18 6 -4.6888 -9.2801 1.6121 19 6 -3.9641 -9.7806 2.8664 20 6 -3.1544 -8.6250 3.4645 21 8 -2.2926 -8.0904 2.4550 22 6 -0.1056 -2.7571 0.0026 23 1 -0.4850 0.8401 -0.0004 24 1 2.5626 -4.0323 0.6557 25 1 1.8320 -4.2351 -0.9970 26 1 0.3597 -4.0639 1.7308 27 1 -0.1072 -5.5870 -0.7872 28 1 -1.2383 -7.8827 0.0576 29 1 -2.4919 -6.8345 -0.6485 30 1 -3.6652 -6.8222 1.5727 31 1 -5.4252 -8.5269 1.8922 32 1 -5.1890 -10.1144 1.1203 33 1 -4.6952 -10.1301 3.5954 34 1 -3.2948 -10.5984 2.5995 35 1 -3.8327 -7.8471 3.8148 36 1 -2.5558 -8.9921 4.2982 37 1 -0.5311 -2.8723 -0.9943 38 1 -0.7188 -2.1400 0.6594 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030249360.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:26 Heat of formation + Delta-G solvation = -74.235056 kcal Electronic energy + Delta-G solvation = -20780.700530 eV Core-core repulsion = 17432.207293 eV Total energy + Delta-G solvation = -3348.493237 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.25715 -39.23956 -37.46460 -35.76837 -33.46969 -33.31943 -31.82856 -30.19066 -27.37457 -26.16190 -24.80801 -24.25637 -22.63606 -21.34404 -20.12416 -19.52777 -17.72304 -16.87024 -16.72991 -16.57198 -15.85400 -15.65254 -15.05646 -14.94661 -14.90124 -14.44534 -13.82542 -13.46593 -13.37469 -13.05609 -12.76525 -12.11881 -11.86960 -11.74444 -11.43371 -11.39056 -11.28724 -11.25012 -10.88497 -10.75319 -10.41320 -10.18750 -10.03435 -9.79693 -9.55472 -9.44454 -8.80214 -8.39797 -6.91146 -5.76719 -3.10597 2.96056 3.07119 3.40035 3.44426 3.47105 3.54644 3.86267 4.47070 4.47274 4.48585 4.69479 4.84157 4.88414 5.09114 5.10771 5.17901 5.25403 5.36379 5.48405 5.50976 5.54810 5.60843 5.63796 5.78811 6.04638 6.23776 6.43588 6.58476 6.67049 6.79527 7.04973 7.24727 7.38482 7.56876 7.90856 7.97327 8.59238 9.03404 9.69727 10.56589 11.40025 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.050874 B = 0.003224 C = 0.003198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.248830 B = 8682.050089 C = 8752.171125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.007 4.007 3 Si 0.914 3.086 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.225 4.225 8 H 0.082 0.918 9 N -0.608 5.608 10 C 0.112 3.888 11 C 0.093 3.907 12 N -0.716 5.716 13 C 0.517 3.483 14 O -0.534 6.534 15 C -0.129 4.129 16 C 0.264 3.736 17 O -0.397 6.397 18 C 0.059 3.941 19 C -0.193 4.193 20 C 0.058 3.942 21 O -0.376 6.376 22 C 0.154 3.846 23 H 0.254 0.746 24 H 0.049 0.951 25 H 0.036 0.964 26 H 0.110 0.890 27 H 0.397 0.603 28 H 0.107 0.893 29 H 0.115 0.885 30 H 0.067 0.933 31 H 0.054 0.946 32 H 0.098 0.902 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.055 0.945 36 H 0.098 0.902 37 H 0.029 0.971 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.358 -19.985 1.806 21.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.204 4.204 3 Si 0.745 3.255 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.353 4.353 8 H 0.099 0.901 9 N -0.334 5.334 10 C -0.015 4.015 11 C -0.012 4.012 12 N -0.367 5.367 13 C 0.302 3.698 14 O -0.410 6.410 15 C -0.169 4.169 16 C 0.169 3.831 17 O -0.318 6.318 18 C -0.017 4.017 19 C -0.231 4.231 20 C -0.019 4.019 21 O -0.296 6.296 22 C 0.027 3.973 23 H 0.064 0.936 24 H 0.067 0.933 25 H 0.053 0.947 26 H 0.128 0.872 27 H 0.230 0.770 28 H 0.126 0.874 29 H 0.133 0.867 30 H 0.084 0.916 31 H 0.072 0.928 32 H 0.116 0.884 33 H 0.102 0.898 34 H 0.099 0.901 35 H 0.073 0.927 36 H 0.116 0.884 37 H 0.046 0.954 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -8.284 -19.354 2.462 21.196 hybrid contribution 0.190 0.741 -0.385 0.857 sum -8.094 -18.612 2.077 20.402 Atomic orbital electron populations 1.69831 1.05048 1.25460 1.56185 1.24821 0.95702 0.97644 1.02205 0.86087 0.78628 0.83281 0.77548 1.21587 1.21576 1.20545 1.18991 0.90256 0.81642 1.44382 0.90052 1.45725 1.02454 0.99178 1.86072 1.22874 0.94724 0.86799 0.97061 1.23884 0.93282 0.84115 0.99902 1.46085 1.39908 1.30902 1.19779 1.20088 0.80214 0.83880 0.85617 1.90723 1.63995 1.66496 1.19783 1.21489 0.99143 0.97431 0.98858 1.22902 0.89548 0.86972 0.83704 1.88050 1.52319 1.51633 1.39774 1.22621 0.90400 0.98131 0.90593 1.22811 1.01181 1.00149 0.98989 1.22604 0.93907 0.94406 0.90975 1.88187 1.34164 1.80164 1.27116 1.22721 0.88121 0.89237 0.97190 0.93552 0.93253 0.94683 0.87194 0.76956 0.87449 0.86738 0.91607 0.92754 0.88362 0.89840 0.90078 0.92706 0.88414 0.95368 0.90547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.70 11.39 55.49 0.63 -27.07 16 2 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 3 Si 0.91 22.33 29.55 -169.99 -5.02 17.31 16 4 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.23 -6.39 10.70 -15.06 -0.16 -6.55 16 8 H 0.08 2.21 7.83 -52.49 -0.41 1.80 16 9 N -0.61 -15.78 3.70 -177.86 -0.66 -16.44 16 10 C 0.11 2.27 8.69 -2.96 -0.03 2.24 16 11 C 0.09 1.84 4.40 -70.13 -0.31 1.53 16 12 N -0.72 -11.07 5.37 -55.33 -0.30 -11.37 16 13 C 0.52 8.23 7.71 -10.99 -0.08 8.15 16 14 O -0.53 -10.74 15.04 -8.85 -0.13 -10.88 16 15 C -0.13 -1.53 5.78 -27.89 -0.16 -1.70 16 16 C 0.26 3.43 2.80 37.16 0.10 3.53 16 17 O -0.40 -4.64 10.54 -59.03 -0.62 -5.26 16 18 C 0.06 0.51 6.96 37.29 0.26 0.77 16 19 C -0.19 -1.54 6.35 -26.46 -0.17 -1.71 16 20 C 0.06 0.60 6.96 37.29 0.26 0.86 16 21 O -0.38 -5.34 9.77 -64.76 -0.63 -5.97 16 22 C 0.15 3.72 7.33 -2.83 -0.02 3.70 16 23 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 24 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.04 0.65 8.11 -51.93 -0.42 0.23 16 26 H 0.11 2.39 7.51 -51.93 -0.39 2.00 16 27 H 0.40 4.84 8.71 -40.82 -0.36 4.48 16 28 H 0.11 1.12 8.14 -51.93 -0.42 0.69 16 29 H 0.11 1.09 8.14 -51.92 -0.42 0.67 16 30 H 0.07 0.90 7.96 -51.93 -0.41 0.49 16 31 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.08 2.10 7.17 -51.92 -0.37 1.73 16 LS Contribution 316.88 15.07 4.78 4.78 Total: -1.00 -34.78 316.88 -8.09 -42.87 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -5.73 Total: 1.52 kcal Atomic # 6 Polarization: 10.93 SS G_CDS: -0.40 Total: 10.52 kcal Atomic # 7 Polarization: -54.56 SS G_CDS: -0.32 Total: -54.88 kcal Atomic # 8 Polarization: -20.72 SS G_CDS: -1.39 Total: -22.11 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -34.78 -8.09 -42.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030249360.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.369 kcal (2) G-P(sol) polarization free energy of solvation -34.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds