Wall clock time and date at job start Mon Mar 30 2020 00:52:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 120.00003 * 2 1 4 4 H 1.48500 * 109.47055 * 269.99946 * 3 2 1 5 5 H 1.48500 * 109.47098 * 29.99712 * 3 2 1 6 6 H 1.48500 * 109.47159 * 149.99499 * 3 2 1 7 7 C 1.38815 * 120.00151 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00107 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99934 * 0.02562 * 7 2 1 10 10 C 1.47586 * 134.49270 * 179.97438 * 9 7 2 11 11 C 1.53943 * 86.11723 * 155.35586 * 10 9 7 12 12 N 1.46501 * 113.74291 * 137.95210 * 11 10 9 13 13 C 1.34770 * 120.00013 * 156.92285 * 12 11 10 14 14 O 1.21281 * 119.99965 * 0.02562 * 13 12 11 15 15 C 1.50697 * 120.00148 * 180.02562 * 13 12 11 16 16 C 1.52995 * 109.47391 * 180.02562 * 15 13 12 17 17 O 1.42967 * 109.47161 * 175.00116 * 16 15 13 18 18 C 1.43095 * 113.77014 * 178.79211 * 17 16 15 19 19 C 1.53261 * 108.94358 * 302.02838 * 18 17 16 20 20 C 1.53259 * 108.84186 * 54.52606 * 19 18 17 21 21 O 1.42968 * 109.47265 * 294.99606 * 16 15 13 22 22 C 1.47807 * 134.45889 * 359.86307 * 9 7 2 23 23 H 0.97002 * 120.00065 * 0.02562 * 1 2 3 24 24 H 1.09003 * 113.76333 * 41.05092 * 10 9 7 25 25 H 1.08996 * 113.76622 * 269.66024 * 10 9 7 26 26 H 1.09003 * 113.73713 * 269.15733 * 11 10 9 27 27 H 0.96996 * 119.99559 * 336.92732 * 12 11 10 28 28 H 1.09006 * 109.47218 * 59.99878 * 15 13 12 29 29 H 1.09008 * 109.47128 * 300.00317 * 15 13 12 30 30 H 1.08998 * 109.47129 * 54.99933 * 16 15 13 31 31 H 1.08997 * 109.55621 * 61.86774 * 18 17 16 32 32 H 1.08999 * 109.55712 * 182.08124 * 18 17 16 33 33 H 1.08997 * 109.57207 * 174.33189 * 19 18 17 34 34 H 1.08998 * 109.57441 * 294.58821 * 19 18 17 35 35 H 1.08994 * 109.56239 * 65.31171 * 20 19 18 36 36 H 1.08999 * 109.55602 * 185.64189 * 20 19 18 37 37 H 1.08999 * 113.77040 * 90.37985 * 22 9 7 38 38 H 1.09008 * 113.83656 * 318.92200 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 1.7202 -3.8102 0.0005 11 6 0.3472 -4.0830 0.6410 12 7 -0.3332 -5.2614 0.0982 13 6 -1.2730 -5.8932 0.8289 14 8 -1.5558 -5.4858 1.9357 15 6 -1.9725 -7.1057 0.2708 16 6 -2.9846 -7.6263 1.2932 17 8 -3.7295 -8.7037 0.7203 18 6 -4.6888 -9.2801 1.6121 19 6 -3.9641 -9.7806 2.8664 20 6 -3.1544 -8.6250 3.4645 21 8 -2.2926 -8.0904 2.4550 22 6 -0.1056 -2.7571 0.0026 23 1 -0.4850 0.8401 -0.0004 24 1 2.5626 -4.0323 0.6557 25 1 1.8320 -4.2351 -0.9970 26 1 0.3597 -4.0639 1.7308 27 1 -0.1072 -5.5870 -0.7872 28 1 -1.2383 -7.8827 0.0576 29 1 -2.4919 -6.8345 -0.6485 30 1 -3.6652 -6.8222 1.5727 31 1 -5.4252 -8.5269 1.8922 32 1 -5.1890 -10.1144 1.1203 33 1 -4.6952 -10.1301 3.5954 34 1 -3.2948 -10.5984 2.5995 35 1 -3.8327 -7.8471 3.8148 36 1 -2.5558 -8.9921 4.2982 37 1 -0.5311 -2.8723 -0.9943 38 1 -0.7188 -2.1400 0.6594 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001030249360.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:26 Heat of formation + Delta-G solvation = -100.081066 kcal Electronic energy + Delta-G solvation = -20781.821297 eV Core-core repulsion = 17432.207293 eV Total energy + Delta-G solvation = -3349.614004 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.30624 -40.53307 -39.11231 -36.65696 -35.11162 -34.20752 -33.68901 -31.23121 -29.29525 -26.91345 -26.61101 -25.64939 -24.17049 -22.12631 -21.44135 -21.25909 -18.79992 -18.69730 -17.86697 -17.56799 -17.10327 -16.94096 -16.79791 -15.98097 -15.76007 -15.70752 -15.64917 -14.71466 -14.60798 -14.27536 -13.95865 -13.57469 -13.39195 -13.20721 -13.01354 -12.82940 -12.60617 -12.40149 -12.26522 -12.09497 -12.06315 -11.94088 -11.52457 -10.99469 -10.89403 -10.85204 -10.65756 -9.92259 -8.97246 -7.92122 -5.27420 1.45452 1.48278 1.56994 1.68890 1.97340 2.46988 2.67808 2.82259 3.26150 3.40989 3.71486 3.80355 3.80823 3.85489 3.89281 4.13881 4.25290 4.38482 4.43592 4.46216 4.53899 4.57279 4.73695 4.76119 4.83800 4.87243 4.91719 5.12583 5.19773 5.24880 5.48145 5.72772 5.85102 5.89580 6.17483 6.64816 6.88096 7.34505 7.57948 8.51179 9.24680 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.050874 B = 0.003224 C = 0.003198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.248830 B = 8682.050089 C = 8752.171125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.070 4.070 3 Si 0.984 3.016 4 H -0.283 1.283 5 H -0.296 1.296 6 H -0.266 1.266 7 C -0.236 4.236 8 H 0.090 0.910 9 N -0.640 5.640 10 C 0.122 3.878 11 C 0.121 3.879 12 N -0.702 5.702 13 C 0.516 3.484 14 O -0.580 6.580 15 C -0.118 4.118 16 C 0.262 3.738 17 O -0.404 6.404 18 C 0.047 3.953 19 C -0.184 4.184 20 C 0.045 3.955 21 O -0.405 6.405 22 C 0.152 3.848 23 H 0.248 0.752 24 H 0.063 0.937 25 H 0.069 0.931 26 H 0.088 0.912 27 H 0.418 0.582 28 H 0.130 0.870 29 H 0.144 0.856 30 H 0.050 0.950 31 H 0.059 0.941 32 H 0.123 0.877 33 H 0.110 0.890 34 H 0.080 0.920 35 H 0.051 0.949 36 H 0.107 0.893 37 H 0.029 0.971 38 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.836 -21.954 0.946 23.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.263 4.263 3 Si 0.811 3.189 4 H -0.210 1.210 5 H -0.223 1.223 6 H -0.190 1.190 7 C -0.364 4.364 8 H 0.108 0.892 9 N -0.367 5.367 10 C -0.003 4.003 11 C 0.015 3.985 12 N -0.354 5.354 13 C 0.303 3.697 14 O -0.459 6.459 15 C -0.157 4.157 16 C 0.167 3.833 17 O -0.325 6.325 18 C -0.028 4.028 19 C -0.221 4.221 20 C -0.031 4.031 21 O -0.326 6.326 22 C 0.025 3.975 23 H 0.057 0.943 24 H 0.081 0.919 25 H 0.087 0.913 26 H 0.106 0.894 27 H 0.255 0.745 28 H 0.148 0.852 29 H 0.161 0.839 30 H 0.067 0.933 31 H 0.077 0.923 32 H 0.141 0.859 33 H 0.129 0.871 34 H 0.098 0.902 35 H 0.069 0.931 36 H 0.125 0.875 37 H 0.046 0.954 38 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -7.743 -21.393 1.569 22.806 hybrid contribution -0.020 1.252 -0.077 1.255 sum -7.763 -20.141 1.492 21.637 Atomic orbital electron populations 1.70042 1.06658 1.25696 1.57990 1.25728 0.96586 1.01233 1.02765 0.85003 0.77642 0.78646 0.77574 1.21013 1.22290 1.19033 1.19445 0.90994 0.82939 1.42996 0.89197 1.46064 1.03406 1.00865 1.86403 1.23020 0.94965 0.83516 0.98811 1.23115 0.93170 0.83867 0.98388 1.45806 1.39543 1.29391 1.20703 1.20811 0.79517 0.84476 0.84868 1.90712 1.65241 1.67957 1.22024 1.21469 0.99378 0.95640 0.99231 1.22817 0.89622 0.87076 0.83800 1.88020 1.52817 1.51151 1.40510 1.22943 0.90063 0.98985 0.90836 1.22753 1.01312 0.98833 0.99230 1.22859 0.94134 0.95275 0.90851 1.88142 1.35735 1.80620 1.28079 1.22613 0.87259 0.91062 0.96560 0.94286 0.91897 0.91345 0.89397 0.74504 0.85177 0.83863 0.93306 0.92251 0.85919 0.87130 0.90158 0.93077 0.87522 0.95352 0.95032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.39 11.39 21.65 0.25 -59.14 16 2 C -0.07 -4.09 5.50 84.86 0.47 -3.62 16 3 Si 0.98 46.37 29.55 68.60 2.03 48.39 16 4 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 5 H -0.30 -14.14 7.11 99.48 0.71 -13.44 16 6 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 7 C -0.24 -13.38 10.70 84.03 0.90 -12.48 16 8 H 0.09 4.80 7.83 -2.91 -0.02 4.78 16 9 N -0.64 -33.28 3.70 -716.61 -2.65 -35.93 16 10 C 0.12 4.71 8.69 86.48 0.75 5.47 16 11 C 0.12 4.75 4.40 46.75 0.21 4.96 16 12 N -0.70 -20.59 5.37 -447.36 -2.40 -22.99 16 13 C 0.52 15.95 7.71 87.66 0.68 16.62 16 14 O -0.58 -23.75 15.04 10.75 0.16 -23.59 16 15 C -0.12 -2.55 5.78 29.85 0.17 -2.37 16 16 C 0.26 6.55 2.80 71.98 0.20 6.75 16 17 O -0.40 -8.67 10.54 -126.22 -1.33 -10.00 16 18 C 0.05 0.71 6.96 72.07 0.50 1.21 16 19 C -0.18 -2.55 6.35 30.77 0.20 -2.35 16 20 C 0.04 0.90 6.96 72.07 0.50 1.40 16 21 O -0.40 -11.27 9.77 -120.75 -1.18 -12.45 16 22 C 0.15 7.51 7.33 86.45 0.63 8.14 16 23 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16 24 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 25 H 0.07 2.26 8.11 -2.39 -0.02 2.24 16 26 H 0.09 3.90 7.51 -2.39 -0.02 3.88 16 27 H 0.42 8.91 8.71 -92.71 -0.81 8.11 16 28 H 0.13 2.28 8.14 -2.38 -0.02 2.26 16 29 H 0.14 2.28 8.14 -2.38 -0.02 2.26 16 30 H 0.05 1.36 7.96 -2.39 -0.02 1.34 16 31 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.11 0.92 8.14 -2.39 -0.02 0.91 16 34 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.03 1.82 7.17 -2.38 -0.02 1.81 16 Total: -1.00 -77.64 316.88 0.33 -77.31 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: 0.25 Total: 14.66 kcal Atomic # 6 Polarization: 18.53 SS G_CDS: 5.21 Total: 23.73 kcal Atomic # 7 Polarization: -113.26 SS G_CDS: -4.81 Total: -118.07 kcal Atomic # 8 Polarization: -43.69 SS G_CDS: -2.35 Total: -46.03 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 2.03 Total: 48.39 kcal Total: -77.64 0.33 -77.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030249360.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.767 kcal (2) G-P(sol) polarization free energy of solvation -77.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds