Wall clock time and date at job start Mon Mar 30 2020 02:16:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 109.52421 * 2 1 4 4 O 1.43074 * 109.57705 * 239.84308 * 2 1 3 5 5 C 1.43081 * 113.59515 * 182.11280 * 4 2 1 6 6 C 1.53144 * 109.14661 * 57.95061 * 5 4 2 7 7 O 1.43198 * 109.19003 * 304.68288 * 6 5 4 8 8 C 1.43081 * 113.51496 * 57.90948 * 7 6 5 9 9 H 1.08996 * 109.52159 * 182.14546 * 8 7 6 10 10 C 1.50705 * 109.52182 * 62.01788 * 8 7 6 11 11 O 1.21283 * 119.99849 * 352.23136 * 10 8 7 12 12 N 1.34767 * 120.00132 * 172.23334 * 10 8 7 13 13 C 1.46501 * 120.00327 * 175.07768 * 12 10 8 14 14 C 1.53497 * 114.20921 * 155.00003 * 13 12 10 15 15 N 1.47063 * 87.98584 * 87.51909 * 14 13 12 16 16 C 1.36940 * 136.05533 * 207.08726 * 15 14 13 17 17 H 1.07999 * 120.00409 * 359.97438 * 16 15 14 18 18 C 1.38821 * 119.99542 * 180.02562 * 16 15 14 19 19 N 1.31611 * 120.00052 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99654 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47308 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47080 * 119.99743 * 20 18 16 23 23 H 1.48496 * 109.47295 * 239.99680 * 20 18 16 24 24 C 1.47064 * 87.88520 * 27.34091 * 15 14 13 25 25 H 1.09001 * 109.47117 * 292.30521 * 1 2 3 26 26 H 1.09008 * 109.47221 * 52.29607 * 1 2 3 27 27 H 1.08999 * 109.47739 * 172.30028 * 1 2 3 28 28 H 1.08999 * 109.52165 * 177.85354 * 5 4 2 29 29 H 1.08997 * 109.51994 * 298.04701 * 5 4 2 30 30 H 1.09004 * 109.52647 * 64.59452 * 6 5 4 31 31 H 1.09006 * 109.51936 * 184.71913 * 6 5 4 32 32 H 0.97005 * 119.99892 * 355.07473 * 12 10 8 33 33 H 1.08997 * 113.41364 * 21.79905 * 13 12 10 34 34 H 1.09003 * 113.46652 * 332.74091 * 14 13 12 35 35 H 1.09001 * 113.46837 * 202.30560 * 14 13 12 36 36 H 0.97005 * 119.99927 * 180.02562 * 19 18 16 37 37 H 1.09004 * 113.46555 * 87.43390 * 24 15 14 38 38 H 1.08997 * 113.46962 * 217.87174 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 8 2.0094 -0.6772 -1.1656 5 6 3.4358 -0.7695 -1.2282 6 6 3.9476 -1.4942 0.0201 7 8 3.4683 -0.8169 1.1872 8 6 2.0418 -0.7246 1.2482 9 1 1.7507 -0.1669 2.1383 10 6 1.4495 -2.1092 1.3052 11 8 2.1608 -3.0797 1.1532 12 7 0.1295 -2.2689 1.5251 13 6 -0.4651 -3.6068 1.4735 14 6 -1.7536 -3.7551 2.2944 15 7 -2.4977 -3.2921 1.1135 16 6 -3.6830 -2.6450 0.8861 17 1 -4.3086 -2.3559 1.7176 18 6 -4.0808 -2.3615 -0.4133 19 7 -3.3187 -2.7142 -1.4266 20 14 -5.6980 -1.4795 -0.7234 21 1 -6.3632 -1.1948 0.5734 22 1 -5.4370 -0.2036 -1.4370 23 1 -6.5796 -2.3393 -1.5532 24 6 -1.4118 -3.8355 0.2838 25 1 -0.3633 0.3900 0.9508 26 1 -0.3634 0.6285 -0.8131 27 1 -0.3634 -1.0183 -0.1377 28 1 3.7259 -1.3278 -2.1183 29 1 3.8641 0.2319 -1.2695 30 1 3.5833 -2.5216 0.0200 31 1 5.0376 -1.4942 0.0200 32 1 -0.4269 -1.4980 1.7176 33 1 0.2575 -4.4082 1.6274 34 1 -1.8110 -3.0694 3.1399 35 1 -1.9759 -4.7857 2.5711 36 1 -3.5965 -2.5158 -2.3346 37 1 -1.5441 -4.8874 0.0304 38 1 -1.1781 -3.2186 -0.5838 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030466922.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:11 Heat of formation + Delta-G solvation = -48.871161 kcal Electronic energy + Delta-G solvation = -22366.897906 eV Core-core repulsion = 19019.504530 eV Total energy + Delta-G solvation = -3347.393376 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.81584 -38.81599 -37.37492 -35.93669 -33.98241 -32.57899 -31.53630 -28.88528 -27.82320 -26.80555 -24.62704 -23.47766 -23.18247 -21.88463 -20.06763 -19.25970 -17.21676 -16.90244 -16.76306 -16.50885 -15.91797 -15.29095 -15.12398 -14.88681 -14.32587 -14.00294 -13.71148 -13.48254 -12.95867 -12.66312 -12.56721 -12.20295 -12.09880 -11.88181 -11.68263 -11.40387 -11.27227 -10.95470 -10.81446 -10.60100 -10.40133 -10.19343 -9.92567 -9.60523 -9.43430 -8.92175 -8.66104 -8.29798 -6.94332 -5.80025 -3.14359 2.81730 3.34851 3.40709 3.43167 3.43490 3.73949 3.75862 4.41021 4.51057 4.85445 4.96560 5.02181 5.16670 5.18186 5.32470 5.39568 5.40424 5.44871 5.52517 5.69833 5.89045 6.03438 6.10226 6.15284 6.21300 6.38235 6.49080 6.59002 6.79825 6.88878 7.14192 7.19250 7.29274 7.56858 7.90992 7.97767 8.56625 8.98879 9.65822 10.58459 11.36061 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.024557 B = 0.006127 C = 0.005416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.915219 B = 4569.143492 C = 5168.725207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.068 3.932 3 H 0.074 0.926 4 O -0.365 6.365 5 C 0.026 3.974 6 C 0.002 3.998 7 O -0.356 6.356 8 C 0.040 3.960 9 H 0.131 0.869 10 C 0.501 3.499 11 O -0.541 6.541 12 N -0.685 5.685 13 C 0.081 3.919 14 C 0.109 3.891 15 N -0.608 5.608 16 C -0.223 4.223 17 H 0.081 0.919 18 C -0.003 4.003 19 N -0.913 5.913 20 Si 0.909 3.091 21 H -0.280 1.280 22 H -0.290 1.290 23 H -0.291 1.291 24 C 0.142 3.858 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.098 0.902 28 H 0.103 0.897 29 H 0.054 0.946 30 H 0.102 0.898 31 H 0.099 0.901 32 H 0.406 0.594 33 H 0.096 0.904 34 H 0.043 0.957 35 H 0.045 0.955 36 H 0.254 0.746 37 H 0.033 0.967 38 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.552 5.554 4.012 13.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.010 3.990 3 H 0.092 0.908 4 O -0.284 6.284 5 C -0.051 4.051 6 C -0.075 4.075 7 O -0.273 6.273 8 C -0.021 4.021 9 H 0.149 0.851 10 C 0.287 3.713 11 O -0.419 6.419 12 N -0.337 5.337 13 C -0.025 4.025 14 C -0.019 4.019 15 N -0.335 5.335 16 C -0.350 4.350 17 H 0.099 0.901 18 C -0.201 4.201 19 N -0.559 5.559 20 Si 0.740 3.260 21 H -0.205 1.205 22 H -0.217 1.217 23 H -0.218 1.218 24 C 0.015 3.985 25 H 0.092 0.908 26 H 0.090 0.910 27 H 0.117 0.883 28 H 0.121 0.879 29 H 0.072 0.928 30 H 0.120 0.880 31 H 0.117 0.883 32 H 0.243 0.757 33 H 0.114 0.886 34 H 0.061 0.939 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.051 0.949 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 11.781 5.027 3.691 13.330 hybrid contribution -1.244 0.701 -0.230 1.447 sum 10.537 5.728 3.461 12.483 Atomic orbital electron populations 1.22141 0.90749 1.06610 1.02789 1.22652 0.96996 0.94998 0.84396 0.90797 1.88223 1.20334 1.78278 1.41588 1.23241 0.82096 1.00378 0.99424 1.23695 0.99838 0.99457 0.84475 1.88132 1.17758 1.77784 1.43662 1.22880 0.83421 0.94561 1.01269 0.85113 1.20984 0.82628 0.91241 0.76438 1.90547 1.59754 1.41346 1.50261 1.45782 1.07740 1.10355 1.69835 1.22668 0.94294 0.84232 1.01333 1.22765 0.88981 0.97734 0.92370 1.45754 1.21823 1.64585 1.01290 1.18948 0.94995 1.28786 0.92266 0.90148 1.24784 0.98648 1.01306 0.95344 1.69841 1.37279 1.50777 0.97990 0.86101 0.83163 0.78984 0.77799 1.20508 1.21684 1.21783 1.22617 0.84133 0.97000 0.94763 0.90798 0.90991 0.88288 0.87911 0.92771 0.87983 0.88304 0.75667 0.88643 0.93881 0.93717 0.93629 0.94898 0.90393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.50 8.02 37.16 0.30 -2.20 16 2 C 0.07 0.96 3.15 -26.66 -0.08 0.88 16 3 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 4 O -0.37 -5.96 10.23 -48.72 -0.50 -6.46 16 5 C 0.03 0.33 7.05 37.23 0.26 0.59 16 6 C 0.00 0.02 6.60 37.23 0.25 0.27 16 7 O -0.36 -5.32 10.54 -62.44 -0.66 -5.98 16 8 C 0.04 0.58 3.37 -27.81 -0.09 0.48 16 9 H 0.13 1.47 8.14 -51.93 -0.42 1.04 16 10 C 0.50 8.67 6.44 -10.99 -0.07 8.60 16 11 O -0.54 -10.82 13.34 -14.19 -0.19 -11.01 16 12 N -0.68 -11.83 3.78 -53.49 -0.20 -12.03 16 13 C 0.08 1.55 4.64 -67.68 -0.31 1.24 16 14 C 0.11 2.12 8.44 -8.52 -0.07 2.04 16 15 N -0.61 -14.70 3.78 -184.64 -0.70 -15.40 16 16 C -0.22 -5.91 10.75 -15.05 -0.16 -6.08 16 17 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 18 C 0.00 -0.09 5.50 -17.43 -0.10 -0.19 16 19 N -0.91 -26.21 11.50 55.49 0.64 -25.57 16 20 Si 0.91 21.40 29.55 -169.99 -5.02 16.38 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 24 C 0.14 3.29 7.24 -8.38 -0.06 3.23 16 25 H 0.07 0.91 7.60 -51.93 -0.39 0.52 16 26 H 0.07 1.09 8.14 -51.92 -0.42 0.67 16 27 H 0.10 1.88 5.97 -51.93 -0.31 1.57 16 28 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.10 1.68 5.35 -51.93 -0.28 1.40 16 31 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16 32 H 0.41 6.60 6.53 -40.82 -0.27 6.34 16 33 H 0.10 1.79 7.41 -51.93 -0.38 1.41 16 34 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 37 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.08 2.04 7.07 -51.93 -0.37 1.68 16 LS Contribution 304.60 15.07 4.59 4.59 Total: -1.00 -31.86 304.60 -7.54 -39.40 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -5.35 Total: 7.22 kcal Atomic # 6 Polarization: 9.02 SS G_CDS: -0.15 Total: 8.87 kcal Atomic # 7 Polarization: -52.74 SS G_CDS: -0.26 Total: -53.00 kcal Atomic # 8 Polarization: -22.10 SS G_CDS: -1.35 Total: -23.45 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.86 -7.54 -39.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030466922.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.474 kcal (2) G-P(sol) polarization free energy of solvation -31.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds