Wall clock time and date at job start Mon Mar 30 2020 02:16:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 109.52421 * 2 1 4 4 O 1.43074 * 109.57705 * 239.84308 * 2 1 3 5 5 C 1.43081 * 113.59515 * 182.11280 * 4 2 1 6 6 C 1.53144 * 109.14661 * 57.95061 * 5 4 2 7 7 O 1.43198 * 109.19003 * 304.68288 * 6 5 4 8 8 C 1.43081 * 113.51496 * 57.90948 * 7 6 5 9 9 H 1.08996 * 109.52159 * 182.14546 * 8 7 6 10 10 C 1.50705 * 109.52182 * 62.01788 * 8 7 6 11 11 O 1.21283 * 119.99849 * 352.23136 * 10 8 7 12 12 N 1.34767 * 120.00132 * 172.23334 * 10 8 7 13 13 C 1.46501 * 120.00327 * 175.07768 * 12 10 8 14 14 C 1.53497 * 114.20921 * 155.00003 * 13 12 10 15 15 N 1.47063 * 87.98584 * 87.51909 * 14 13 12 16 16 C 1.36940 * 136.05533 * 207.08726 * 15 14 13 17 17 H 1.07999 * 120.00409 * 359.97438 * 16 15 14 18 18 C 1.38821 * 119.99542 * 180.02562 * 16 15 14 19 19 N 1.31611 * 120.00052 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99654 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47308 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47080 * 119.99743 * 20 18 16 23 23 H 1.48496 * 109.47295 * 239.99680 * 20 18 16 24 24 C 1.47064 * 87.88520 * 27.34091 * 15 14 13 25 25 H 1.09001 * 109.47117 * 292.30521 * 1 2 3 26 26 H 1.09008 * 109.47221 * 52.29607 * 1 2 3 27 27 H 1.08999 * 109.47739 * 172.30028 * 1 2 3 28 28 H 1.08999 * 109.52165 * 177.85354 * 5 4 2 29 29 H 1.08997 * 109.51994 * 298.04701 * 5 4 2 30 30 H 1.09004 * 109.52647 * 64.59452 * 6 5 4 31 31 H 1.09006 * 109.51936 * 184.71913 * 6 5 4 32 32 H 0.97005 * 119.99892 * 355.07473 * 12 10 8 33 33 H 1.08997 * 113.41364 * 21.79905 * 13 12 10 34 34 H 1.09003 * 113.46652 * 332.74091 * 14 13 12 35 35 H 1.09001 * 113.46837 * 202.30560 * 14 13 12 36 36 H 0.97005 * 119.99927 * 180.02562 * 19 18 16 37 37 H 1.09004 * 113.46555 * 87.43390 * 24 15 14 38 38 H 1.08997 * 113.46962 * 217.87174 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 8 2.0094 -0.6772 -1.1656 5 6 3.4358 -0.7695 -1.2282 6 6 3.9476 -1.4942 0.0201 7 8 3.4683 -0.8169 1.1872 8 6 2.0418 -0.7246 1.2482 9 1 1.7507 -0.1669 2.1383 10 6 1.4495 -2.1092 1.3052 11 8 2.1608 -3.0797 1.1532 12 7 0.1295 -2.2689 1.5251 13 6 -0.4651 -3.6068 1.4735 14 6 -1.7536 -3.7551 2.2944 15 7 -2.4977 -3.2921 1.1135 16 6 -3.6830 -2.6450 0.8861 17 1 -4.3086 -2.3559 1.7176 18 6 -4.0808 -2.3615 -0.4133 19 7 -3.3187 -2.7142 -1.4266 20 14 -5.6980 -1.4795 -0.7234 21 1 -6.3632 -1.1948 0.5734 22 1 -5.4370 -0.2036 -1.4370 23 1 -6.5796 -2.3393 -1.5532 24 6 -1.4118 -3.8355 0.2838 25 1 -0.3633 0.3900 0.9508 26 1 -0.3634 0.6285 -0.8131 27 1 -0.3634 -1.0183 -0.1377 28 1 3.7259 -1.3278 -2.1183 29 1 3.8641 0.2319 -1.2695 30 1 3.5833 -2.5216 0.0200 31 1 5.0376 -1.4942 0.0200 32 1 -0.4269 -1.4980 1.7176 33 1 0.2575 -4.4082 1.6274 34 1 -1.8110 -3.0694 3.1399 35 1 -1.9759 -4.7857 2.5711 36 1 -3.5965 -2.5158 -2.3346 37 1 -1.5441 -4.8874 0.0304 38 1 -1.1781 -3.2186 -0.5838 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001030466922.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:10 Heat of formation + Delta-G solvation = -71.509397 kcal Electronic energy + Delta-G solvation = -22367.879574 eV Core-core repulsion = 19019.504530 eV Total energy + Delta-G solvation = -3348.375044 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.05879 -40.30926 -38.86498 -37.10256 -35.37460 -34.30180 -33.06915 -30.00260 -29.60909 -28.11602 -26.36993 -25.22175 -24.26057 -23.28056 -21.37214 -20.92166 -18.75998 -18.35387 -18.01063 -17.72566 -17.17170 -16.85714 -16.60149 -16.30747 -15.77084 -15.60382 -15.20744 -14.78670 -14.49258 -14.41726 -13.82345 -13.43434 -13.26828 -13.22049 -13.20920 -12.94583 -12.82955 -12.59569 -12.39614 -12.11866 -11.95856 -11.75255 -11.49755 -11.25433 -10.94387 -10.76949 -9.91199 -9.81938 -8.91848 -7.85667 -5.20746 1.47432 1.48152 1.49519 1.59025 2.11580 2.48925 2.63316 2.70039 3.33462 3.40702 3.48521 3.63465 3.82809 3.90713 3.98807 4.17600 4.23551 4.37477 4.43108 4.50399 4.56344 4.65320 4.79659 4.82213 4.86605 4.89234 4.98632 5.13379 5.25981 5.35803 5.53503 5.70517 5.79824 5.93190 6.09454 6.58130 6.92138 7.20332 7.63566 8.62051 9.30416 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.024557 B = 0.006127 C = 0.005416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.915219 B = 4569.143492 C = 5168.725207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.071 3.929 3 H 0.106 0.894 4 O -0.402 6.402 5 C 0.023 3.977 6 C 0.000 4.000 7 O -0.361 6.361 8 C 0.045 3.955 9 H 0.168 0.832 10 C 0.496 3.504 11 O -0.572 6.572 12 N -0.680 5.680 13 C 0.104 3.896 14 C 0.117 3.883 15 N -0.629 5.629 16 C -0.224 4.224 17 H 0.090 0.910 18 C -0.061 4.061 19 N -0.947 5.947 20 Si 0.973 3.027 21 H -0.262 1.262 22 H -0.293 1.293 23 H -0.300 1.300 24 C 0.138 3.862 25 H 0.102 0.898 26 H 0.064 0.936 27 H 0.055 0.945 28 H 0.113 0.887 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.129 0.871 32 H 0.412 0.588 33 H 0.102 0.898 34 H 0.066 0.934 35 H 0.061 0.939 36 H 0.245 0.755 37 H 0.019 0.981 38 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.067 7.199 5.680 15.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.013 3.987 3 H 0.123 0.877 4 O -0.321 6.321 5 C -0.053 4.053 6 C -0.076 4.076 7 O -0.278 6.278 8 C -0.016 4.016 9 H 0.185 0.815 10 C 0.284 3.716 11 O -0.452 6.452 12 N -0.332 5.332 13 C -0.003 4.003 14 C -0.009 4.009 15 N -0.355 5.355 16 C -0.351 4.351 17 H 0.108 0.892 18 C -0.254 4.254 19 N -0.596 5.596 20 Si 0.802 3.198 21 H -0.187 1.187 22 H -0.220 1.220 23 H -0.228 1.228 24 C 0.011 3.989 25 H 0.120 0.880 26 H 0.083 0.917 27 H 0.074 0.926 28 H 0.131 0.869 29 H 0.097 0.903 30 H 0.088 0.912 31 H 0.147 0.853 32 H 0.250 0.750 33 H 0.119 0.881 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.054 0.946 37 H 0.037 0.963 38 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 12.304 6.683 5.407 15.010 hybrid contribution -1.350 0.139 -0.748 1.550 sum 10.954 6.822 4.658 13.719 Atomic orbital electron populations 1.22084 0.91859 1.03807 1.04079 1.22753 0.96073 0.96258 0.83654 0.87679 1.88185 1.22389 1.78893 1.42678 1.23428 0.80545 1.01865 0.99449 1.23739 1.01502 0.97683 0.84644 1.88127 1.17867 1.77569 1.44223 1.23056 0.83090 0.92567 1.02902 0.81458 1.21688 0.82202 0.92474 0.75247 1.90548 1.60415 1.42825 1.51411 1.45733 1.08035 1.09717 1.69756 1.22330 0.93995 0.85585 0.98393 1.22862 0.87564 0.98846 0.91630 1.45962 1.21453 1.64715 1.03403 1.19333 0.95484 1.27870 0.92462 0.89238 1.25549 1.01745 1.02797 0.95332 1.70049 1.38955 1.52686 0.97880 0.85088 0.79420 0.77339 0.77923 1.18653 1.21973 1.22800 1.22545 0.85883 0.95392 0.95062 0.87990 0.91659 0.92573 0.86900 0.90255 0.91216 0.85340 0.74974 0.88060 0.91550 0.92151 0.94600 0.96284 0.94098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.71 8.02 71.98 0.58 -4.13 16 2 C 0.07 1.86 3.15 30.64 0.10 1.95 16 3 H 0.11 2.15 8.14 -2.38 -0.02 2.13 16 4 O -0.40 -12.81 10.23 -136.08 -1.39 -14.20 16 5 C 0.02 0.56 7.05 72.03 0.51 1.07 16 6 C 0.00 0.01 6.60 72.03 0.48 0.49 16 7 O -0.36 -9.89 10.54 -122.96 -1.30 -11.18 16 8 C 0.05 1.18 3.37 29.90 0.10 1.28 16 9 H 0.17 3.09 8.14 -2.39 -0.02 3.07 16 10 C 0.50 16.75 6.44 87.66 0.56 17.32 16 11 O -0.57 -22.88 13.34 15.84 0.21 -22.67 16 12 N -0.68 -22.96 3.78 -441.53 -1.67 -24.63 16 13 C 0.10 3.94 4.64 45.55 0.21 4.16 16 14 C 0.12 4.36 8.44 83.18 0.70 5.06 16 15 N -0.63 -30.33 3.78 -738.07 -2.79 -33.12 16 16 C -0.22 -11.78 10.75 84.04 0.90 -10.88 16 17 H 0.09 4.46 7.83 -2.91 -0.02 4.43 16 18 C -0.06 -3.32 5.50 84.87 0.47 -2.86 16 19 N -0.95 -56.16 11.50 21.65 0.25 -55.91 16 20 Si 0.97 44.25 29.55 68.60 2.03 46.28 16 21 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 22 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 23 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 24 C 0.14 6.63 7.24 83.26 0.60 7.23 16 25 H 0.10 2.30 7.60 -2.39 -0.02 2.28 16 26 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 27 H 0.06 2.17 5.97 -2.39 -0.01 2.15 16 28 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 29 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.07 2.30 5.35 -2.38 -0.01 2.29 16 31 H 0.13 2.47 8.14 -2.38 -0.02 2.45 16 32 H 0.41 12.85 6.53 -92.70 -0.61 12.24 16 33 H 0.10 3.77 7.41 -2.39 -0.02 3.75 16 34 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 35 H 0.06 2.12 8.14 -2.39 -0.02 2.11 16 36 H 0.24 14.32 8.31 -92.70 -0.77 13.54 16 37 H 0.02 0.96 8.14 -2.38 -0.02 0.94 16 38 H 0.04 2.26 7.07 -2.39 -0.02 2.24 16 Total: -1.00 -70.39 304.60 1.02 -69.37 By element: Atomic # 1 Polarization: 24.91 SS G_CDS: 0.47 Total: 25.38 kcal Atomic # 6 Polarization: 15.48 SS G_CDS: 5.21 Total: 20.69 kcal Atomic # 7 Polarization: -109.45 SS G_CDS: -4.21 Total: -113.66 kcal Atomic # 8 Polarization: -45.58 SS G_CDS: -2.48 Total: -48.06 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -70.39 1.02 -69.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030466922.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.136 kcal (2) G-P(sol) polarization free energy of solvation -70.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds