Wall clock time and date at job start Mon Mar 30 2020 01:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42902 * 109.46882 * 2 1 4 4 C 1.52994 * 109.46958 * 119.99645 * 2 1 3 5 5 C 1.50705 * 109.46901 * 180.64998 * 4 2 1 6 6 O 1.21274 * 120.00166 * 354.40422 * 5 4 2 7 7 N 1.34777 * 120.00004 * 174.39324 * 5 4 2 8 8 C 1.46501 * 120.00230 * 180.02562 * 7 5 4 9 9 C 1.50698 * 109.47257 * 180.02562 * 8 7 5 10 10 O 1.21297 * 120.00050 * 0.02562 * 9 8 7 11 11 N 1.34770 * 120.00015 * 179.97438 * 9 8 7 12 12 C 1.37101 * 120.00449 * 179.97438 * 11 9 8 13 13 H 1.08003 * 119.99186 * 359.97438 * 12 11 9 14 14 C 1.38946 * 120.00276 * 180.02562 * 12 11 9 15 15 N 1.31408 * 120.00098 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 119.99912 * 179.97438 * 14 12 11 17 17 H 1.48508 * 109.47137 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47337 * 119.99542 * 16 14 12 19 19 H 1.48498 * 109.47366 * 240.00202 * 16 14 12 20 20 C 1.53001 * 109.47131 * 240.00052 * 2 1 3 21 21 C 1.52994 * 117.49793 * 128.62126 * 20 2 1 22 22 C 1.52996 * 60.00302 * 252.51045 * 21 20 2 23 23 H 1.08997 * 109.47041 * 304.80128 * 1 2 3 24 24 H 1.08997 * 109.47213 * 64.79769 * 1 2 3 25 25 H 1.08997 * 109.46890 * 184.80051 * 1 2 3 26 26 H 0.96698 * 113.99648 * 180.02562 * 3 2 1 27 27 H 1.09008 * 109.47130 * 60.65783 * 4 2 1 28 28 H 1.08996 * 109.47846 * 300.65527 * 4 2 1 29 29 H 0.97001 * 119.99818 * 359.73121 * 7 5 4 30 30 H 1.09000 * 109.46835 * 300.00371 * 8 7 5 31 31 H 1.08997 * 109.46741 * 60.00028 * 8 7 5 32 32 H 0.97001 * 120.00308 * 0.02562 * 11 9 8 33 33 H 0.97007 * 119.99952 * 180.02562 * 15 14 12 34 34 H 1.09000 * 115.54606 * 274.33140 * 20 2 1 35 35 H 1.08998 * 117.50165 * 359.97438 * 21 20 2 36 36 H 1.09005 * 117.50046 * 145.02008 * 21 20 2 37 37 H 1.08996 * 117.50458 * 252.51502 * 22 21 20 38 38 H 1.09006 * 117.50115 * 107.48827 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5469 -0.7072 1.2573 6 8 4.1544 -0.2641 0.3058 7 7 4.2196 -1.1870 2.3221 8 6 5.6845 -1.1729 2.3303 9 6 6.1853 -1.7606 3.6244 10 8 5.3962 -2.1530 4.4578 11 7 7.5100 -1.8510 3.8554 12 6 7.9658 -2.3851 5.0329 13 1 7.2631 -2.7330 5.7757 14 6 9.3315 -2.4779 5.2712 15 7 10.1864 -2.0541 4.3677 16 14 9.9523 -3.2050 6.8760 17 1 8.7964 -3.6038 7.7187 18 1 10.7901 -4.3968 6.5881 19 1 10.7638 -2.1919 7.5973 20 6 2.0400 -0.7212 -1.2493 21 6 3.0741 0.0052 -2.1116 22 6 1.6358 -0.1495 -2.6096 23 1 -0.3633 0.5865 0.8438 24 1 -0.3633 0.4376 -0.9298 25 1 -0.3633 -1.0240 0.0860 26 1 2.9703 1.4236 -0.0004 27 1 1.6863 -1.7522 1.2434 28 1 1.6671 -0.2142 2.1392 29 1 3.7337 -1.5377 3.0849 30 1 6.0581 -1.7644 1.4944 31 1 6.0384 -0.1463 2.2359 32 1 8.1411 -1.5375 3.1888 33 1 11.1399 -2.1192 4.5339 34 1 2.1267 -1.8045 -1.1642 35 1 3.3908 0.9971 -1.7893 36 1 3.8416 -0.6001 -2.5941 37 1 1.4568 -0.8565 -3.4196 38 1 1.0064 0.7405 -2.6146 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117321083.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:39 Heat of formation + Delta-G solvation = -107.646885 kcal Electronic energy + Delta-G solvation = -20746.147841 eV Core-core repulsion = 17396.205758 eV Total energy + Delta-G solvation = -3349.942083 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.36677 -38.70333 -37.77362 -34.98345 -34.47483 -33.71699 -32.26398 -31.41532 -29.01752 -26.98765 -24.53804 -23.29669 -22.19397 -20.48651 -19.88157 -19.54643 -18.15931 -17.26627 -16.92004 -16.20449 -15.71702 -15.42665 -15.13754 -14.59985 -14.51572 -14.10294 -13.80041 -13.60774 -12.85891 -12.78821 -12.61352 -12.35296 -12.22857 -12.15023 -11.76949 -11.66857 -11.28763 -11.17050 -11.08454 -10.43939 -10.43702 -10.36471 -10.24367 -9.87275 -9.68464 -9.47343 -8.84873 -8.67835 -8.14083 -6.55211 -3.97361 2.74214 3.07653 3.19737 3.25056 3.33882 3.69771 3.84534 4.08377 4.19482 4.57519 4.66530 4.79292 4.83775 5.06694 5.09375 5.13289 5.28901 5.35096 5.46198 5.51385 5.67091 5.71041 5.78754 5.85943 5.91215 6.02569 6.04982 6.07060 6.18336 6.28959 6.61514 7.42718 7.70990 7.74252 7.88517 8.37233 8.42020 9.00999 9.35233 9.82890 10.61670 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.046001 B = 0.003290 C = 0.003155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.531177 B = 8508.832543 C = 8872.243304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.179 3.821 3 O -0.564 6.564 4 C -0.168 4.168 5 C 0.512 3.488 6 O -0.545 6.545 7 N -0.706 5.706 8 C 0.109 3.891 9 C 0.426 3.574 10 O -0.598 6.598 11 N -0.549 5.549 12 C -0.306 4.306 13 H 0.106 0.894 14 C 0.026 3.974 15 N -0.894 5.894 16 Si 0.933 3.067 17 H -0.267 1.267 18 H -0.280 1.280 19 H -0.280 1.280 20 C -0.172 4.172 21 C -0.138 4.138 22 C -0.186 4.186 23 H 0.063 0.937 24 H 0.065 0.935 25 H 0.070 0.930 26 H 0.386 0.614 27 H 0.102 0.898 28 H 0.100 0.900 29 H 0.411 0.589 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.396 0.604 33 H 0.274 0.726 34 H 0.100 0.900 35 H 0.097 0.903 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.426 2.966 -9.941 17.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.137 3.863 3 O -0.375 6.375 4 C -0.209 4.209 5 C 0.298 3.702 6 O -0.424 6.424 7 N -0.359 5.359 8 C -0.019 4.019 9 C 0.212 3.788 10 O -0.485 6.485 11 N -0.183 5.183 12 C -0.435 4.435 13 H 0.124 0.876 14 C -0.177 4.177 15 N -0.534 5.534 16 Si 0.759 3.241 17 H -0.191 1.191 18 H -0.206 1.206 19 H -0.206 1.206 20 C -0.190 4.190 21 C -0.175 4.175 22 C -0.223 4.223 23 H 0.082 0.918 24 H 0.084 0.916 25 H 0.089 0.911 26 H 0.239 0.761 27 H 0.121 0.879 28 H 0.119 0.881 29 H 0.249 0.751 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.230 0.770 33 H 0.084 0.916 34 H 0.118 0.882 35 H 0.115 0.885 36 H 0.105 0.895 37 H 0.105 0.895 38 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -14.885 3.136 -10.031 18.221 hybrid contribution 1.331 -0.644 0.811 1.686 sum -13.554 2.492 -9.220 16.581 Atomic orbital electron populations 1.21730 0.92229 1.02301 1.03029 1.20291 0.93776 0.81839 0.90346 1.86405 1.28920 1.25455 1.96717 1.22453 0.92932 1.03963 1.01504 1.20555 0.89847 0.77541 0.82247 1.90636 1.70267 1.47107 1.34393 1.45778 1.07016 1.62805 1.20330 1.20944 0.80815 1.02109 0.97989 1.19764 0.83796 0.86362 0.88867 1.90500 1.55025 1.55040 1.47914 1.41808 1.04741 1.53279 1.18496 1.19784 0.91436 1.37148 0.95128 0.87619 1.25330 0.95696 0.97271 0.99407 1.69621 1.03077 1.46082 1.34642 0.85756 0.78880 0.78497 0.80950 1.19112 1.20584 1.20579 1.22809 1.05479 0.99109 0.91651 1.22667 0.91197 1.02084 1.01534 1.23001 0.99681 1.02988 0.96618 0.91807 0.91557 0.91135 0.76089 0.87945 0.88135 0.75135 0.89888 0.89854 0.77046 0.91602 0.88168 0.88462 0.89462 0.89517 0.88916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 8.75 37.16 0.33 -0.89 16 2 C 0.18 1.97 0.92 -90.62 -0.08 1.88 16 3 O -0.56 -7.32 12.10 -52.17 -0.63 -7.95 16 4 C -0.17 -1.80 4.96 -27.88 -0.14 -1.94 16 5 C 0.51 7.16 7.32 -10.98 -0.08 7.08 16 6 O -0.54 -8.50 11.38 -11.37 -0.13 -8.63 16 7 N -0.71 -10.95 5.53 -61.47 -0.34 -11.29 16 8 C 0.11 1.92 6.15 -5.19 -0.03 1.89 16 9 C 0.43 9.58 7.85 -10.99 -0.09 9.49 16 10 O -0.60 -15.06 15.24 5.54 0.08 -14.98 16 11 N -0.55 -13.41 5.29 -10.96 -0.06 -13.47 16 12 C -0.31 -8.23 9.68 -14.93 -0.14 -8.37 16 13 H 0.11 2.97 7.16 -52.48 -0.38 2.60 16 14 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 15 N -0.89 -23.66 13.05 55.50 0.72 -22.94 16 16 Si 0.93 20.34 29.55 -169.99 -5.02 15.32 16 17 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 18 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 19 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 20 C -0.17 -1.93 4.03 -90.62 -0.37 -2.29 16 21 C -0.14 -1.64 7.93 -26.74 -0.21 -1.86 16 22 C -0.19 -1.91 9.61 -26.73 -0.26 -2.17 16 23 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.07 0.59 7.13 -51.93 -0.37 0.22 16 25 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.39 5.16 5.33 45.56 0.24 5.40 16 27 H 0.10 0.91 8.14 -51.92 -0.42 0.49 16 28 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.41 6.36 7.44 -40.82 -0.30 6.06 16 30 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 31 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 32 H 0.40 9.30 7.90 -40.82 -0.32 8.98 16 33 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 34 H 0.10 1.12 8.11 -51.93 -0.42 0.70 16 35 H 0.10 1.23 6.30 -51.93 -0.33 0.90 16 36 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 37 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.09 0.95 7.59 -51.93 -0.39 0.55 16 LS Contribution 316.56 15.07 4.77 4.77 Total: -1.00 -29.71 316.56 -6.56 -36.27 By element: Atomic # 1 Polarization: 24.26 SS G_CDS: -4.79 Total: 19.48 kcal Atomic # 6 Polarization: 4.58 SS G_CDS: -1.17 Total: 3.41 kcal Atomic # 7 Polarization: -48.02 SS G_CDS: 0.33 Total: -47.69 kcal Atomic # 8 Polarization: -30.87 SS G_CDS: -0.68 Total: -31.55 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.71 -6.56 -36.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117321083.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.375 kcal (2) G-P(sol) polarization free energy of solvation -29.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds