Wall clock time and date at job start Mon Mar 30 2020 01:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42902 * 109.46882 * 2 1 4 4 C 1.52994 * 109.46958 * 119.99645 * 2 1 3 5 5 C 1.50705 * 109.46901 * 180.64998 * 4 2 1 6 6 O 1.21274 * 120.00166 * 354.40422 * 5 4 2 7 7 N 1.34777 * 120.00004 * 174.39324 * 5 4 2 8 8 C 1.46501 * 120.00230 * 180.02562 * 7 5 4 9 9 C 1.50698 * 109.47257 * 180.02562 * 8 7 5 10 10 O 1.21297 * 120.00050 * 0.02562 * 9 8 7 11 11 N 1.34770 * 120.00015 * 179.97438 * 9 8 7 12 12 C 1.37101 * 120.00449 * 179.97438 * 11 9 8 13 13 H 1.08003 * 119.99186 * 359.97438 * 12 11 9 14 14 C 1.38946 * 120.00276 * 180.02562 * 12 11 9 15 15 N 1.31408 * 120.00098 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 119.99912 * 179.97438 * 14 12 11 17 17 H 1.48508 * 109.47137 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47337 * 119.99542 * 16 14 12 19 19 H 1.48498 * 109.47366 * 240.00202 * 16 14 12 20 20 C 1.53001 * 109.47131 * 240.00052 * 2 1 3 21 21 C 1.52994 * 117.49793 * 128.62126 * 20 2 1 22 22 C 1.52996 * 60.00302 * 252.51045 * 21 20 2 23 23 H 1.08997 * 109.47041 * 304.80128 * 1 2 3 24 24 H 1.08997 * 109.47213 * 64.79769 * 1 2 3 25 25 H 1.08997 * 109.46890 * 184.80051 * 1 2 3 26 26 H 0.96698 * 113.99648 * 180.02562 * 3 2 1 27 27 H 1.09008 * 109.47130 * 60.65783 * 4 2 1 28 28 H 1.08996 * 109.47846 * 300.65527 * 4 2 1 29 29 H 0.97001 * 119.99818 * 359.73121 * 7 5 4 30 30 H 1.09000 * 109.46835 * 300.00371 * 8 7 5 31 31 H 1.08997 * 109.46741 * 60.00028 * 8 7 5 32 32 H 0.97001 * 120.00308 * 0.02562 * 11 9 8 33 33 H 0.97007 * 119.99952 * 180.02562 * 15 14 12 34 34 H 1.09000 * 115.54606 * 274.33140 * 20 2 1 35 35 H 1.08998 * 117.50165 * 359.97438 * 21 20 2 36 36 H 1.09005 * 117.50046 * 145.02008 * 21 20 2 37 37 H 1.08996 * 117.50458 * 252.51502 * 22 21 20 38 38 H 1.09006 * 117.50115 * 107.48827 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5469 -0.7072 1.2573 6 8 4.1544 -0.2641 0.3058 7 7 4.2196 -1.1870 2.3221 8 6 5.6845 -1.1729 2.3303 9 6 6.1853 -1.7606 3.6244 10 8 5.3962 -2.1530 4.4578 11 7 7.5100 -1.8510 3.8554 12 6 7.9658 -2.3851 5.0329 13 1 7.2631 -2.7330 5.7757 14 6 9.3315 -2.4779 5.2712 15 7 10.1864 -2.0541 4.3677 16 14 9.9523 -3.2050 6.8760 17 1 8.7964 -3.6038 7.7187 18 1 10.7901 -4.3968 6.5881 19 1 10.7638 -2.1919 7.5973 20 6 2.0400 -0.7212 -1.2493 21 6 3.0741 0.0052 -2.1116 22 6 1.6358 -0.1495 -2.6096 23 1 -0.3633 0.5865 0.8438 24 1 -0.3633 0.4376 -0.9298 25 1 -0.3633 -1.0240 0.0860 26 1 2.9703 1.4236 -0.0004 27 1 1.6863 -1.7522 1.2434 28 1 1.6671 -0.2142 2.1392 29 1 3.7337 -1.5377 3.0849 30 1 6.0581 -1.7644 1.4944 31 1 6.0384 -0.1463 2.2359 32 1 8.1411 -1.5375 3.1888 33 1 11.1399 -2.1192 4.5339 34 1 2.1267 -1.8045 -1.1642 35 1 3.3908 0.9971 -1.7893 36 1 3.8416 -0.6001 -2.5941 37 1 1.4568 -0.8565 -3.4196 38 1 1.0064 0.7405 -2.6146 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117321083.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:38 Heat of formation + Delta-G solvation = -129.403749 kcal Electronic energy + Delta-G solvation = -20747.091290 eV Core-core repulsion = 17396.205758 eV Total energy + Delta-G solvation = -3350.885531 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.44248 -40.28066 -39.02759 -36.23919 -35.88178 -35.21953 -33.41489 -33.13086 -30.14698 -28.30566 -26.30058 -24.20726 -23.07293 -21.63348 -21.36964 -20.72251 -20.06891 -18.55049 -17.91364 -17.41387 -17.06221 -16.88111 -16.46786 -16.16750 -15.91708 -15.58607 -15.06562 -14.90851 -14.07390 -13.78948 -13.71426 -13.65211 -13.55925 -13.19750 -13.01626 -12.93250 -12.79584 -12.45894 -12.17508 -12.12045 -11.94131 -11.58943 -11.32930 -11.21587 -10.75912 -10.56835 -10.48944 -10.15793 -10.06763 -8.52459 -6.02663 1.34270 1.42365 1.56179 1.63442 1.90557 2.06764 2.32294 2.98595 3.13397 3.14973 3.33189 3.67419 3.82904 3.84509 4.14488 4.23201 4.25033 4.41928 4.44710 4.47467 4.57636 4.68766 4.78421 4.86180 4.95037 5.01573 5.18726 5.31125 5.33918 5.35644 5.37951 5.40012 5.91010 6.45364 6.55871 6.74050 7.02685 7.22241 7.43823 7.93690 8.64628 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.046001 B = 0.003290 C = 0.003155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.531177 B = 8508.832543 C = 8872.243304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.173 3.827 3 O -0.576 6.576 4 C -0.162 4.162 5 C 0.511 3.489 6 O -0.561 6.561 7 N -0.710 5.710 8 C 0.124 3.876 9 C 0.431 3.569 10 O -0.625 6.625 11 N -0.560 5.560 12 C -0.337 4.337 13 H 0.086 0.914 14 C -0.010 4.010 15 N -0.916 5.916 16 Si 0.996 3.004 17 H -0.270 1.270 18 H -0.271 1.271 19 H -0.271 1.271 20 C -0.174 4.174 21 C -0.155 4.155 22 C -0.170 4.170 23 H 0.066 0.934 24 H 0.065 0.935 25 H 0.091 0.909 26 H 0.381 0.619 27 H 0.127 0.873 28 H 0.114 0.886 29 H 0.412 0.588 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.398 0.602 33 H 0.280 0.720 34 H 0.103 0.897 35 H 0.085 0.915 36 H 0.080 0.920 37 H 0.101 0.899 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.481 2.599 -10.075 18.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.132 3.868 3 O -0.386 6.386 4 C -0.202 4.202 5 C 0.299 3.701 6 O -0.441 6.441 7 N -0.364 5.364 8 C -0.004 4.004 9 C 0.218 3.782 10 O -0.513 6.513 11 N -0.196 5.196 12 C -0.467 4.467 13 H 0.104 0.896 14 C -0.211 4.211 15 N -0.556 5.556 16 Si 0.820 3.180 17 H -0.194 1.194 18 H -0.196 1.196 19 H -0.197 1.197 20 C -0.192 4.192 21 C -0.192 4.192 22 C -0.207 4.207 23 H 0.085 0.915 24 H 0.084 0.916 25 H 0.110 0.890 26 H 0.234 0.766 27 H 0.145 0.855 28 H 0.132 0.868 29 H 0.250 0.750 30 H 0.111 0.889 31 H 0.111 0.889 32 H 0.233 0.767 33 H 0.089 0.911 34 H 0.121 0.879 35 H 0.103 0.897 36 H 0.098 0.902 37 H 0.119 0.881 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -15.958 2.781 -10.193 19.138 hybrid contribution 1.607 -0.504 0.790 1.861 sum -14.350 2.277 -9.403 17.307 Atomic orbital electron populations 1.21759 0.90359 1.03766 1.03169 1.20539 0.95084 0.80969 0.90245 1.86407 1.28534 1.26905 1.96787 1.22508 0.89999 1.05657 1.02001 1.21158 0.91178 0.76476 0.81277 1.90646 1.70988 1.47563 1.34866 1.45818 1.05897 1.63588 1.21052 1.20725 0.82384 1.02212 0.95114 1.20527 0.82948 0.84804 0.89909 1.90475 1.55595 1.55835 1.49422 1.41864 1.05587 1.53952 1.18170 1.19772 0.91867 1.38999 0.96028 0.89627 1.26118 0.95363 0.97150 1.02471 1.69683 1.03500 1.46432 1.36022 0.84821 0.78128 0.78056 0.77042 1.19412 1.19623 1.19661 1.22871 1.04975 0.99162 0.92206 1.22605 0.92054 1.01610 1.02929 1.23024 0.98031 1.03091 0.96536 0.91535 0.91593 0.89030 0.76642 0.85504 0.86802 0.75008 0.88943 0.88905 0.76739 0.91073 0.87906 0.89676 0.90164 0.88097 0.88798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.02 8.75 71.98 0.63 -1.39 16 2 C 0.17 3.45 0.92 -10.79 -0.01 3.44 16 3 O -0.58 -14.33 12.10 -132.79 -1.61 -15.94 16 4 C -0.16 -3.08 4.96 29.85 0.15 -2.93 16 5 C 0.51 13.54 7.32 87.66 0.64 14.18 16 6 O -0.56 -16.99 11.38 13.18 0.15 -16.84 16 7 N -0.71 -21.18 5.53 -466.79 -2.58 -23.76 16 8 C 0.12 4.27 6.15 85.63 0.53 4.80 16 9 C 0.43 19.42 7.85 87.66 0.69 20.11 16 10 O -0.63 -31.69 15.24 -3.08 -0.05 -31.74 16 11 N -0.56 -27.75 5.29 -306.99 -1.62 -29.37 16 12 C -0.34 -18.44 9.68 84.04 0.81 -17.62 16 13 H 0.09 4.94 7.16 -2.91 -0.02 4.92 16 14 C -0.01 -0.54 5.50 84.93 0.47 -0.07 16 15 N -0.92 -48.33 13.05 21.66 0.28 -48.04 16 16 Si 1.00 41.43 29.55 68.60 2.03 43.46 16 17 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 18 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 19 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 20 C -0.17 -3.59 4.03 -10.79 -0.04 -3.64 16 21 C -0.15 -3.61 7.93 30.59 0.24 -3.36 16 22 C -0.17 -3.20 9.61 30.59 0.29 -2.91 16 23 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 24 H 0.07 1.01 7.13 -2.39 -0.02 0.99 16 25 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.38 10.09 5.33 -74.06 -0.39 9.69 16 27 H 0.13 1.83 8.14 -2.38 -0.02 1.81 16 28 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.41 12.29 7.44 -92.71 -0.69 11.61 16 30 H 0.09 3.05 8.14 -2.39 -0.02 3.03 16 31 H 0.09 3.06 8.14 -2.39 -0.02 3.04 16 32 H 0.40 18.97 7.90 -92.71 -0.73 18.24 16 33 H 0.28 13.77 8.31 -92.70 -0.77 13.00 16 34 H 0.10 2.07 8.11 -2.39 -0.02 2.05 16 35 H 0.08 2.17 6.30 -2.39 -0.02 2.16 16 36 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 37 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.09 1.76 7.59 -2.38 -0.02 1.74 16 Total: -1.00 -63.10 316.56 0.29 -62.81 By element: Atomic # 1 Polarization: 49.54 SS G_CDS: -0.71 Total: 48.83 kcal Atomic # 6 Polarization: 6.20 SS G_CDS: 4.40 Total: 10.60 kcal Atomic # 7 Polarization: -97.26 SS G_CDS: -3.92 Total: -101.18 kcal Atomic # 8 Polarization: -63.02 SS G_CDS: -1.50 Total: -64.52 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 2.03 Total: 43.46 kcal Total: -63.10 0.29 -62.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117321083.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.593 kcal (2) G-P(sol) polarization free energy of solvation -63.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds