Wall clock time and date at job start Mon Mar 30 2020 01:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42908 * 109.46807 * 2 1 4 4 C 1.52997 * 109.47582 * 239.99766 * 2 1 3 5 5 C 1.50704 * 109.47147 * 60.00186 * 4 2 1 6 6 O 1.21285 * 119.99661 * 359.97438 * 5 4 2 7 7 N 1.34769 * 120.00430 * 180.02562 * 5 4 2 8 8 C 1.46495 * 120.00388 * 179.97438 * 7 5 4 9 9 C 1.50698 * 109.47309 * 179.97438 * 8 7 5 10 10 O 1.21286 * 120.00210 * 0.02562 * 9 8 7 11 11 N 1.34778 * 119.99968 * 179.97438 * 9 8 7 12 12 C 1.37099 * 119.99806 * 180.02562 * 11 9 8 13 13 H 1.07992 * 120.00178 * 359.97438 * 12 11 9 14 14 C 1.38958 * 119.99822 * 180.02562 * 12 11 9 15 15 N 1.31412 * 119.99804 * 359.97438 * 14 12 11 16 16 Si 1.86794 * 119.99927 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47208 * 59.99563 * 16 14 12 18 18 H 1.48497 * 109.47076 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.47143 * 299.99611 * 16 14 12 20 20 C 1.53003 * 109.47107 * 119.99644 * 2 1 3 21 21 C 1.53001 * 117.51964 * 231.28841 * 20 2 1 22 22 C 1.52999 * 60.00190 * 107.47982 * 21 20 2 23 23 H 1.08996 * 109.47501 * 299.99752 * 1 2 3 24 24 H 1.09004 * 109.47169 * 60.00511 * 1 2 3 25 25 H 1.09005 * 109.46926 * 179.97438 * 1 2 3 26 26 H 0.96700 * 113.99867 * 179.97438 * 3 2 1 27 27 H 1.09000 * 109.47179 * 179.97438 * 4 2 1 28 28 H 1.08996 * 109.47327 * 300.00426 * 4 2 1 29 29 H 0.97001 * 119.99820 * 359.97438 * 7 5 4 30 30 H 1.09010 * 109.46997 * 299.99910 * 8 7 5 31 31 H 1.09003 * 109.47620 * 59.99463 * 8 7 5 32 32 H 0.96998 * 120.00074 * 0.02562 * 11 9 8 33 33 H 0.96999 * 119.99853 * 179.97438 * 15 14 12 34 34 H 1.09002 * 115.54973 * 85.58625 * 20 2 1 35 35 H 1.09001 * 117.49733 * 214.97413 * 21 20 2 36 36 H 1.08995 * 117.49577 * 359.97438 * 21 20 2 37 37 H 1.09004 * 117.50150 * 252.51496 * 22 21 20 38 38 H 1.09004 * 117.51638 * 107.47550 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.5378 -0.0109 -2.4797 6 8 0.8401 0.9749 -2.3684 7 7 1.8630 -0.4716 -3.7037 8 6 1.3743 0.2186 -4.8999 9 6 1.8769 -0.4917 -6.1303 10 8 2.5742 -1.4778 -6.0191 11 7 1.5505 -0.0318 -7.3545 12 6 2.0073 -0.6783 -8.4738 13 1 2.6289 -1.5559 -8.3747 14 6 1.6713 -0.2039 -9.7359 15 7 0.9153 0.8643 -9.8565 16 14 2.2930 -1.0852 -11.2611 17 1 1.7975 -2.4851 -11.2604 18 1 1.7973 -0.3857 -12.4736 19 1 3.7780 -1.0857 -11.2617 20 6 2.0400 -0.7212 1.2493 21 6 3.0757 0.0040 2.1109 22 6 1.6373 -0.1482 2.6097 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 2.9702 1.4238 0.0004 27 1 3.1301 -0.7208 -1.2493 28 1 1.6767 -1.7489 -1.2492 29 1 2.4207 -1.2603 -3.7927 30 1 0.2842 0.2185 -4.8996 31 1 1.7375 1.2464 -4.9004 32 1 0.9925 0.7566 -7.4435 33 1 0.6811 1.1957 -10.7375 34 1 2.1253 -1.8046 1.1648 35 1 3.8425 -0.6023 2.5932 36 1 3.3942 0.9949 1.7876 37 1 1.0093 0.7428 2.6145 38 1 1.4574 -0.8547 3.4200 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117321084.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:42 Heat of formation + Delta-G solvation = -103.919510 kcal Electronic energy + Delta-G solvation = -20488.130361 eV Core-core repulsion = 17138.349909 eV Total energy + Delta-G solvation = -3349.780452 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.20482 -38.80510 -37.92270 -35.16559 -34.40506 -33.63495 -32.14991 -31.38421 -28.87337 -26.88652 -24.58702 -23.55765 -22.52828 -20.23059 -19.97689 -19.54696 -18.13208 -17.44754 -16.55987 -16.35116 -15.59244 -15.38361 -15.16064 -14.64044 -14.47266 -14.22137 -13.84589 -13.70311 -13.22212 -12.85207 -12.33881 -12.22503 -12.14625 -11.92078 -11.69852 -11.63882 -11.43341 -11.12165 -11.10252 -10.73051 -10.51583 -10.32664 -10.29402 -10.07101 -9.63515 -9.40051 -8.72136 -8.63848 -8.11019 -6.52153 -3.94351 2.88734 3.13089 3.20653 3.23194 3.34152 3.52362 3.73620 4.09446 4.17879 4.43530 4.55212 4.68229 4.79817 4.88606 5.00022 5.11206 5.16424 5.24853 5.38772 5.44421 5.60523 5.66504 5.74954 5.88467 5.92191 5.96187 5.98208 6.04877 6.07923 6.42121 6.77027 7.44959 7.63848 7.85439 7.91277 8.43994 8.53703 9.03652 9.38607 9.86544 10.64691 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.057733 B = 0.003004 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.875900 B = 9317.153911 C = 9539.985723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.181 3.819 3 O -0.539 6.539 4 C -0.166 4.166 5 C 0.510 3.490 6 O -0.528 6.528 7 N -0.711 5.711 8 C 0.110 3.890 9 C 0.428 3.572 10 O -0.599 6.599 11 N -0.549 5.549 12 C -0.306 4.306 13 H 0.105 0.895 14 C 0.026 3.974 15 N -0.895 5.895 16 Si 0.934 3.066 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.272 1.272 20 C -0.186 4.186 21 C -0.180 4.180 22 C -0.167 4.167 23 H 0.057 0.943 24 H 0.093 0.907 25 H 0.061 0.939 26 H 0.367 0.633 27 H 0.095 0.905 28 H 0.101 0.899 29 H 0.409 0.591 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.396 0.604 33 H 0.275 0.725 34 H 0.109 0.891 35 H 0.092 0.908 36 H 0.100 0.900 37 H 0.098 0.902 38 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.662 -1.932 19.601 19.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.140 3.860 3 O -0.344 6.344 4 C -0.207 4.207 5 C 0.296 3.704 6 O -0.404 6.404 7 N -0.366 5.366 8 C -0.018 4.018 9 C 0.213 3.787 10 O -0.486 6.486 11 N -0.184 5.184 12 C -0.436 4.436 13 H 0.123 0.877 14 C -0.177 4.177 15 N -0.535 5.535 16 Si 0.761 3.239 17 H -0.198 1.198 18 H -0.208 1.208 19 H -0.198 1.198 20 C -0.205 4.205 21 C -0.217 4.217 22 C -0.204 4.204 23 H 0.076 0.924 24 H 0.112 0.888 25 H 0.080 0.920 26 H 0.214 0.786 27 H 0.113 0.887 28 H 0.119 0.881 29 H 0.247 0.753 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.230 0.770 33 H 0.085 0.915 34 H 0.127 0.873 35 H 0.111 0.889 36 H 0.118 0.882 37 H 0.117 0.883 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 0.895 -1.637 19.530 19.618 hybrid contribution 0.894 -0.568 -0.958 1.428 sum 1.789 -2.205 18.571 18.787 Atomic orbital electron populations 1.21964 0.91950 1.01961 1.04664 1.20312 0.95252 0.81395 0.89039 1.86717 1.25721 1.25359 1.96625 1.22387 1.02948 1.01533 0.93783 1.20353 0.80927 0.84920 0.84223 1.90668 1.37473 1.25898 1.86391 1.45766 1.53648 1.32514 1.04669 1.20921 0.99812 0.96572 0.84498 1.19773 0.86620 0.87688 0.84576 1.90487 1.43148 1.28830 1.86089 1.41800 1.44969 1.27413 1.04193 1.19681 1.29760 1.11152 0.82973 0.87745 1.25331 0.96560 0.96356 0.99457 1.69607 1.35835 1.22524 1.25518 0.85868 0.79164 0.79181 0.79729 1.19774 1.20836 1.19770 1.23132 1.04897 0.99721 0.92727 1.22979 0.92637 1.02265 1.03778 1.22877 0.97995 1.03260 0.96280 0.92366 0.88799 0.92033 0.78602 0.88691 0.88119 0.75347 0.89976 0.89960 0.77023 0.91512 0.87266 0.88909 0.88208 0.88331 0.89035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 8.36 37.16 0.31 -1.45 16 2 C 0.18 1.95 0.79 -90.62 -0.07 1.88 16 3 O -0.54 -6.61 11.04 -53.48 -0.59 -7.20 16 4 C -0.17 -1.77 4.93 -27.88 -0.14 -1.91 16 5 C 0.51 7.68 7.39 -10.99 -0.08 7.60 16 6 O -0.53 -9.57 12.96 -12.70 -0.16 -9.73 16 7 N -0.71 -11.56 5.53 -61.47 -0.34 -11.90 16 8 C 0.11 2.02 6.15 -5.20 -0.03 1.99 16 9 C 0.43 9.80 7.85 -10.99 -0.09 9.72 16 10 O -0.60 -15.26 15.24 5.55 0.08 -15.17 16 11 N -0.55 -13.65 5.29 -10.96 -0.06 -13.71 16 12 C -0.31 -8.33 9.68 -14.93 -0.14 -8.47 16 13 H 0.10 2.95 7.16 -52.49 -0.38 2.57 16 14 C 0.03 0.68 5.50 -17.46 -0.10 0.58 16 15 N -0.89 -23.94 13.05 55.50 0.72 -23.22 16 16 Si 0.93 20.52 29.55 -169.99 -5.02 15.49 16 17 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 18 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 19 H -0.27 -5.94 7.11 56.52 0.40 -5.53 16 20 C -0.19 -1.57 5.15 -90.61 -0.47 -2.03 16 21 C -0.18 -1.35 9.74 -26.73 -0.26 -1.61 16 22 C -0.17 -1.35 9.67 -26.73 -0.26 -1.61 16 23 H 0.06 0.66 7.29 -51.93 -0.38 0.28 16 24 H 0.09 1.40 5.51 -51.93 -0.29 1.11 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.37 3.33 7.56 45.56 0.34 3.68 16 27 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.41 6.49 7.44 -40.82 -0.30 6.19 16 30 H 0.08 1.46 8.14 -51.92 -0.42 1.04 16 31 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 32 H 0.40 9.49 7.90 -40.82 -0.32 9.16 16 33 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 34 H 0.11 0.81 8.11 -51.93 -0.42 0.39 16 35 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.10 0.73 6.38 -51.93 -0.33 0.40 16 37 H 0.10 0.89 7.61 -51.93 -0.40 0.50 16 38 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 319.45 15.07 4.81 4.81 Total: -1.00 -31.77 319.45 -6.44 -38.21 By element: Atomic # 1 Polarization: 22.29 SS G_CDS: -4.56 Total: 17.73 kcal Atomic # 6 Polarization: 6.00 SS G_CDS: -1.32 Total: 4.68 kcal Atomic # 7 Polarization: -49.15 SS G_CDS: 0.33 Total: -48.82 kcal Atomic # 8 Polarization: -31.43 SS G_CDS: -0.67 Total: -32.10 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.77 -6.44 -38.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117321084.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.711 kcal (2) G-P(sol) polarization free energy of solvation -31.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds