Wall clock time and date at job start Mon Mar 30 2020 01:20:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42908 * 109.46807 * 2 1 4 4 C 1.52997 * 109.47582 * 239.99766 * 2 1 3 5 5 C 1.50704 * 109.47147 * 60.00186 * 4 2 1 6 6 O 1.21285 * 119.99661 * 359.97438 * 5 4 2 7 7 N 1.34769 * 120.00430 * 180.02562 * 5 4 2 8 8 C 1.46495 * 120.00388 * 179.97438 * 7 5 4 9 9 C 1.50698 * 109.47309 * 179.97438 * 8 7 5 10 10 O 1.21286 * 120.00210 * 0.02562 * 9 8 7 11 11 N 1.34778 * 119.99968 * 179.97438 * 9 8 7 12 12 C 1.37099 * 119.99806 * 180.02562 * 11 9 8 13 13 H 1.07992 * 120.00178 * 359.97438 * 12 11 9 14 14 C 1.38958 * 119.99822 * 180.02562 * 12 11 9 15 15 N 1.31412 * 119.99804 * 359.97438 * 14 12 11 16 16 Si 1.86794 * 119.99927 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47208 * 59.99563 * 16 14 12 18 18 H 1.48497 * 109.47076 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.47143 * 299.99611 * 16 14 12 20 20 C 1.53003 * 109.47107 * 119.99644 * 2 1 3 21 21 C 1.53001 * 117.51964 * 231.28841 * 20 2 1 22 22 C 1.52999 * 60.00190 * 107.47982 * 21 20 2 23 23 H 1.08996 * 109.47501 * 299.99752 * 1 2 3 24 24 H 1.09004 * 109.47169 * 60.00511 * 1 2 3 25 25 H 1.09005 * 109.46926 * 179.97438 * 1 2 3 26 26 H 0.96700 * 113.99867 * 179.97438 * 3 2 1 27 27 H 1.09000 * 109.47179 * 179.97438 * 4 2 1 28 28 H 1.08996 * 109.47327 * 300.00426 * 4 2 1 29 29 H 0.97001 * 119.99820 * 359.97438 * 7 5 4 30 30 H 1.09010 * 109.46997 * 299.99910 * 8 7 5 31 31 H 1.09003 * 109.47620 * 59.99463 * 8 7 5 32 32 H 0.96998 * 120.00074 * 0.02562 * 11 9 8 33 33 H 0.96999 * 119.99853 * 179.97438 * 15 14 12 34 34 H 1.09002 * 115.54973 * 85.58625 * 20 2 1 35 35 H 1.09001 * 117.49733 * 214.97413 * 21 20 2 36 36 H 1.08995 * 117.49577 * 359.97438 * 21 20 2 37 37 H 1.09004 * 117.50150 * 252.51496 * 22 21 20 38 38 H 1.09004 * 117.51638 * 107.47550 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.5378 -0.0109 -2.4797 6 8 0.8401 0.9749 -2.3684 7 7 1.8630 -0.4716 -3.7037 8 6 1.3743 0.2186 -4.8999 9 6 1.8769 -0.4917 -6.1303 10 8 2.5742 -1.4778 -6.0191 11 7 1.5505 -0.0318 -7.3545 12 6 2.0073 -0.6783 -8.4738 13 1 2.6289 -1.5559 -8.3747 14 6 1.6713 -0.2039 -9.7359 15 7 0.9153 0.8643 -9.8565 16 14 2.2930 -1.0852 -11.2611 17 1 1.7975 -2.4851 -11.2604 18 1 1.7973 -0.3857 -12.4736 19 1 3.7780 -1.0857 -11.2617 20 6 2.0400 -0.7212 1.2493 21 6 3.0757 0.0040 2.1109 22 6 1.6373 -0.1482 2.6097 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 2.9702 1.4238 0.0004 27 1 3.1301 -0.7208 -1.2493 28 1 1.6767 -1.7489 -1.2492 29 1 2.4207 -1.2603 -3.7927 30 1 0.2842 0.2185 -4.8996 31 1 1.7375 1.2464 -4.9004 32 1 0.9925 0.7566 -7.4435 33 1 0.6811 1.1957 -10.7375 34 1 2.1253 -1.8046 1.1648 35 1 3.8425 -0.6023 2.5932 36 1 3.3942 0.9949 1.7876 37 1 1.0093 0.7428 2.6145 38 1 1.4574 -0.8547 3.4200 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117321084.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:41 Heat of formation + Delta-G solvation = -127.902574 kcal Electronic energy + Delta-G solvation = -20489.170344 eV Core-core repulsion = 17138.349909 eV Total energy + Delta-G solvation = -3350.820436 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.30310 -40.26480 -39.25406 -36.26581 -35.88795 -35.19242 -33.39820 -33.04706 -30.11997 -28.24477 -26.33426 -24.48165 -23.10936 -21.42479 -21.36324 -20.78296 -20.06937 -18.60146 -17.71164 -17.37090 -17.05084 -16.85368 -16.39521 -16.18893 -15.86480 -15.50251 -15.35901 -14.83976 -14.46242 -13.90683 -13.75352 -13.60586 -13.53338 -13.15729 -12.92199 -12.76304 -12.60687 -12.47825 -12.24283 -12.13983 -11.89897 -11.56678 -11.34457 -11.11798 -10.83607 -10.58161 -10.51594 -10.14046 -10.04419 -8.51625 -6.02187 1.37706 1.42321 1.53446 1.70697 1.91151 2.07138 2.32654 2.88535 3.13369 3.15492 3.37794 3.68197 3.69563 4.01851 4.06813 4.20209 4.25527 4.35132 4.43039 4.45731 4.48745 4.64878 4.82361 4.84581 4.96002 5.01324 5.14983 5.28878 5.31704 5.33200 5.37379 5.54791 5.91295 6.46151 6.61407 6.91519 7.02519 7.30085 7.44460 7.93523 8.65153 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.057733 B = 0.003004 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.875900 B = 9317.153911 C = 9539.985723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.180 3.820 3 O -0.563 6.563 4 C -0.158 4.158 5 C 0.509 3.491 6 O -0.560 6.560 7 N -0.713 5.713 8 C 0.122 3.878 9 C 0.433 3.567 10 O -0.624 6.624 11 N -0.561 5.561 12 C -0.339 4.339 13 H 0.087 0.913 14 C -0.011 4.011 15 N -0.917 5.917 16 Si 0.998 3.002 17 H -0.269 1.269 18 H -0.272 1.272 19 H -0.269 1.269 20 C -0.184 4.184 21 C -0.172 4.172 22 C -0.173 4.173 23 H 0.056 0.944 24 H 0.060 0.940 25 H 0.078 0.922 26 H 0.378 0.622 27 H 0.119 0.881 28 H 0.124 0.876 29 H 0.412 0.588 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.398 0.602 33 H 0.280 0.720 34 H 0.127 0.873 35 H 0.108 0.892 36 H 0.098 0.902 37 H 0.083 0.917 38 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.470 -2.940 20.446 20.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.139 3.861 3 O -0.370 6.370 4 C -0.198 4.198 5 C 0.297 3.703 6 O -0.438 6.438 7 N -0.368 5.368 8 C -0.006 4.006 9 C 0.220 3.780 10 O -0.512 6.512 11 N -0.196 5.196 12 C -0.468 4.468 13 H 0.105 0.895 14 C -0.212 4.212 15 N -0.557 5.557 16 Si 0.821 3.179 17 H -0.194 1.194 18 H -0.197 1.197 19 H -0.194 1.194 20 C -0.203 4.203 21 C -0.209 4.209 22 C -0.210 4.210 23 H 0.075 0.925 24 H 0.079 0.921 25 H 0.097 0.903 26 H 0.228 0.772 27 H 0.138 0.862 28 H 0.143 0.857 29 H 0.250 0.750 30 H 0.108 0.892 31 H 0.107 0.893 32 H 0.232 0.768 33 H 0.089 0.911 34 H 0.144 0.856 35 H 0.127 0.873 36 H 0.116 0.884 37 H 0.101 0.899 38 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 1.708 -2.640 20.401 20.642 hybrid contribution 0.617 -0.219 -1.141 1.316 sum 2.325 -2.860 19.260 19.610 Atomic orbital electron populations 1.21946 0.93274 1.02528 1.02890 1.20345 0.94402 0.81152 0.90236 1.86689 1.26991 1.26546 1.96766 1.22449 1.04344 1.01983 0.91024 1.21143 0.79940 0.84503 0.84707 1.90673 1.38868 1.27525 1.86783 1.45818 1.53931 1.32599 1.04410 1.20705 1.00094 0.96383 0.83394 1.20454 0.85260 0.87053 0.85228 1.90462 1.44015 1.29987 1.86708 1.41867 1.45541 1.27681 1.04517 1.19716 1.31023 1.11596 0.84442 0.89495 1.26153 0.96320 0.96895 1.01823 1.69678 1.36261 1.23325 1.26467 0.84918 0.78646 0.78136 0.76241 1.19417 1.19661 1.19411 1.23025 1.05473 1.00309 0.91465 1.23060 0.92575 1.02335 1.02950 1.22909 0.98433 1.03064 0.96636 0.92503 0.92096 0.90336 0.77250 0.86247 0.85745 0.74961 0.89232 0.89322 0.76783 0.91051 0.85558 0.87345 0.88361 0.89870 0.87667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.44 8.36 71.98 0.60 -2.83 16 2 C 0.18 3.55 0.79 -10.79 -0.01 3.54 16 3 O -0.56 -13.25 11.04 -131.53 -1.45 -14.70 16 4 C -0.16 -2.99 4.93 29.85 0.15 -2.84 16 5 C 0.51 14.72 7.39 87.66 0.65 15.37 16 6 O -0.56 -20.19 12.96 14.41 0.19 -20.00 16 7 N -0.71 -22.42 5.53 -466.79 -2.58 -25.00 16 8 C 0.12 4.47 6.15 85.63 0.53 5.00 16 9 C 0.43 19.94 7.85 87.66 0.69 20.63 16 10 O -0.62 -31.89 15.24 -3.05 -0.05 -31.94 16 11 N -0.56 -28.28 5.29 -306.99 -1.62 -29.90 16 12 C -0.34 -18.66 9.68 84.04 0.81 -17.84 16 13 H 0.09 5.01 7.16 -2.91 -0.02 4.99 16 14 C -0.01 -0.59 5.50 84.93 0.47 -0.12 16 15 N -0.92 -48.99 13.05 21.67 0.28 -48.70 16 16 Si 1.00 41.65 29.55 68.60 2.03 43.68 16 17 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 18 H -0.27 -10.78 7.11 99.48 0.71 -10.08 16 19 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 20 C -0.18 -2.59 5.15 -10.79 -0.06 -2.65 16 21 C -0.17 -2.13 9.74 30.59 0.30 -1.83 16 22 C -0.17 -2.46 9.67 30.60 0.30 -2.17 16 23 H 0.06 1.28 7.29 -2.39 -0.02 1.26 16 24 H 0.06 1.83 5.51 -2.39 -0.01 1.82 16 25 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 26 H 0.38 6.36 7.56 -74.06 -0.56 5.80 16 27 H 0.12 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.12 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.41 12.57 7.44 -92.71 -0.69 11.88 16 30 H 0.09 3.17 8.14 -2.38 -0.02 3.15 16 31 H 0.09 3.16 8.14 -2.39 -0.02 3.14 16 32 H 0.40 19.40 7.90 -92.71 -0.73 18.67 16 33 H 0.28 14.01 8.31 -92.71 -0.77 13.24 16 34 H 0.13 1.38 8.11 -2.39 -0.02 1.36 16 35 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.10 1.24 6.38 -2.39 -0.02 1.23 16 37 H 0.08 1.44 7.61 -2.39 -0.02 1.42 16 38 H 0.10 1.19 8.14 -2.38 -0.02 1.17 16 Total: -1.00 -68.32 319.45 0.35 -67.98 By element: Atomic # 1 Polarization: 45.23 SS G_CDS: -0.87 Total: 44.36 kcal Atomic # 6 Polarization: 9.83 SS G_CDS: 4.42 Total: 14.25 kcal Atomic # 7 Polarization: -99.69 SS G_CDS: -3.92 Total: -103.61 kcal Atomic # 8 Polarization: -65.33 SS G_CDS: -1.31 Total: -66.64 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 2.03 Total: 43.68 kcal Total: -68.32 0.35 -67.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117321084.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.926 kcal (2) G-P(sol) polarization free energy of solvation -68.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds