Wall clock time and date at job start Mon Mar 30 2020 02:17:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.57263 * 2 1 4 4 C 1.53096 * 109.52137 * 239.85002 * 2 1 3 5 5 O 1.42930 * 109.41898 * 297.70252 * 4 2 1 6 6 C 1.42904 * 114.08305 * 298.84863 * 5 4 2 7 7 C 1.53093 * 109.42351 * 61.15476 * 6 5 4 8 8 C 1.53178 * 109.52574 * 120.16367 * 2 1 3 9 9 H 1.08996 * 109.54450 * 182.79195 * 8 2 1 10 10 C 1.50697 * 109.54073 * 303.05748 * 8 2 1 11 11 O 1.21282 * 120.00191 * 359.55614 * 10 8 2 12 12 N 1.34773 * 120.00051 * 179.55429 * 10 8 2 13 13 C 1.46504 * 120.00306 * 179.97438 * 12 10 8 14 14 C 1.50694 * 109.47126 * 179.97438 * 13 12 10 15 15 O 1.21297 * 120.00395 * 0.02562 * 14 13 12 16 16 N 1.34773 * 120.00123 * 180.02562 * 14 13 12 17 17 C 1.37099 * 120.00501 * 180.02562 * 16 14 13 18 18 H 1.07999 * 119.99798 * 359.97438 * 17 16 14 19 19 C 1.38948 * 120.00319 * 180.02562 * 17 16 14 20 20 N 1.31411 * 120.00091 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99996 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47336 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47648 * 119.99864 * 21 19 17 24 24 H 1.48510 * 109.46814 * 239.99172 * 21 19 17 25 25 H 1.09002 * 109.47179 * 299.83776 * 1 2 3 26 26 H 1.08993 * 109.47426 * 59.83978 * 1 2 3 27 27 H 1.09003 * 109.46744 * 179.83977 * 1 2 3 28 28 H 1.09003 * 109.48254 * 57.67895 * 4 2 1 29 29 H 1.08992 * 109.48305 * 177.71017 * 4 2 1 30 30 H 1.09002 * 109.48241 * 301.16394 * 6 5 4 31 31 H 1.08999 * 109.47648 * 181.13988 * 6 5 4 32 32 H 1.09000 * 109.52228 * 62.29092 * 7 6 5 33 33 H 1.08998 * 109.52401 * 182.47941 * 7 6 5 34 34 H 0.97004 * 119.99946 * 0.02562 * 12 10 8 35 35 H 1.08999 * 109.47082 * 300.00323 * 13 12 10 36 36 H 1.08998 * 109.46584 * 60.00383 * 13 12 10 37 37 H 0.97005 * 120.00253 * 0.02562 * 16 14 13 38 38 H 0.96998 * 120.00576 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0271 0.0000 4 6 2.0416 -0.7247 -1.2477 5 8 1.6098 -2.0869 -1.2167 6 6 2.0971 -2.8277 -0.0960 7 6 1.5877 -2.1874 1.1979 8 6 2.0420 -0.7254 1.2482 9 1 3.1308 -0.6825 1.2740 10 6 1.4803 -0.0651 2.4809 11 8 0.7493 0.8967 2.3740 12 7 1.7903 -0.5434 3.7022 13 6 1.2448 0.0988 4.9006 14 6 1.7400 -0.6232 6.1271 15 8 2.4767 -1.5799 6.0116 16 7 1.3645 -0.2060 7.3523 17 6 1.8155 -0.8626 8.4682 18 1 2.4714 -1.7144 8.3654 19 6 1.4279 -0.4327 9.7314 20 7 0.6294 0.6034 9.8566 21 14 2.0429 -1.3269 11.2518 22 1 2.9226 -2.4512 10.8429 23 1 2.8092 -0.3834 12.1050 24 1 0.8854 -1.8571 12.0163 25 1 -0.3634 0.5113 0.8914 26 1 -0.3634 0.5163 -0.8885 27 1 -0.3633 -1.0277 -0.0029 28 1 1.6452 -0.2381 -2.1390 29 1 3.1307 -0.6890 -1.2680 30 1 3.1871 -2.8196 -0.1011 31 1 1.7409 -3.8560 -0.1575 32 1 0.4989 -2.2317 1.2222 33 1 1.9942 -2.7247 2.0548 34 1 2.3753 -1.3125 3.7877 35 1 1.5691 1.1389 4.9350 36 1 0.1559 0.0585 4.8706 37 1 0.7751 0.5588 7.4448 38 1 0.3590 0.9038 10.7384 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117510299.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:24 Heat of formation + Delta-G solvation = -132.099335 kcal Electronic energy + Delta-G solvation = -20891.956614 eV Core-core repulsion = 17540.954193 eV Total energy + Delta-G solvation = -3351.002421 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.62986 -38.88123 -38.02272 -34.61776 -34.20892 -33.78811 -31.95393 -31.40106 -28.33315 -26.84528 -25.73098 -24.32128 -23.25535 -20.67882 -19.72803 -19.09658 -18.13090 -17.35141 -16.45954 -16.16545 -15.65921 -15.41652 -15.30717 -15.00829 -14.60644 -14.28149 -14.02386 -13.89375 -13.51423 -13.31625 -12.74322 -12.26042 -12.17125 -11.95787 -11.67199 -11.66320 -11.47356 -11.18402 -11.06080 -10.68152 -10.45595 -10.43563 -10.35403 -9.99642 -9.68136 -9.29749 -8.78678 -8.67280 -8.13724 -6.54829 -3.97013 2.75342 3.07795 3.19801 3.24999 3.33004 3.70108 3.71467 4.08533 4.41508 4.59331 4.66108 4.77932 4.84174 4.97619 5.08408 5.13694 5.26445 5.38954 5.44274 5.46460 5.56874 5.64970 5.74454 5.86264 5.91551 5.95427 6.02512 6.07457 6.23825 6.45697 6.73598 7.00505 7.42995 7.76621 7.88756 8.39562 8.43732 9.01244 9.35640 9.83232 10.62073 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.044607 B = 0.003414 C = 0.003240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.558126 B = 8199.022736 C = 8639.683514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.104 4.104 3 H 0.084 0.916 4 C 0.065 3.935 5 O -0.380 6.380 6 C 0.063 3.937 7 C -0.151 4.151 8 C -0.104 4.104 9 H 0.097 0.903 10 C 0.517 3.483 11 O -0.542 6.542 12 N -0.706 5.706 13 C 0.108 3.892 14 C 0.427 3.573 15 O -0.598 6.598 16 N -0.549 5.549 17 C -0.305 4.305 18 H 0.106 0.894 19 C 0.026 3.974 20 N -0.894 5.894 21 Si 0.933 3.067 22 H -0.267 1.267 23 H -0.280 1.280 24 H -0.280 1.280 25 H 0.089 0.911 26 H 0.048 0.952 27 H 0.054 0.946 28 H 0.095 0.905 29 H 0.049 0.951 30 H 0.052 0.948 31 H 0.097 0.903 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.410 0.590 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.396 0.604 38 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.855 -2.134 -17.456 17.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.123 4.123 3 H 0.103 0.897 4 C -0.012 4.012 5 O -0.299 6.299 6 C -0.014 4.014 7 C -0.189 4.189 8 C -0.126 4.126 9 H 0.115 0.885 10 C 0.303 3.697 11 O -0.420 6.420 12 N -0.360 5.360 13 C -0.019 4.019 14 C 0.213 3.787 15 O -0.485 6.485 16 N -0.183 5.183 17 C -0.435 4.435 18 H 0.124 0.876 19 C -0.177 4.177 20 N -0.534 5.534 21 Si 0.759 3.241 22 H -0.191 1.191 23 H -0.206 1.206 24 H -0.206 1.206 25 H 0.108 0.892 26 H 0.067 0.933 27 H 0.073 0.927 28 H 0.113 0.887 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.115 0.885 32 H 0.100 0.900 33 H 0.101 0.899 34 H 0.248 0.752 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.230 0.770 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.623 -2.073 -17.521 17.718 hybrid contribution 0.388 -0.070 1.298 1.356 sum 2.011 -2.143 -16.223 16.487 Atomic orbital electron populations 1.22094 0.93723 1.02187 1.03521 1.21528 0.98258 0.99635 0.92914 0.89741 1.22676 0.98171 0.82324 0.98026 1.87934 1.74197 1.22498 1.45264 1.22567 0.98079 0.95648 0.85060 1.22256 1.03222 0.93991 0.99456 1.21367 1.01575 0.96181 0.93428 0.88520 1.20426 0.81005 0.83947 0.84344 1.90594 1.37173 1.27713 1.86519 1.45756 1.50891 1.34595 1.04715 1.20954 0.99308 0.97199 0.84483 1.19749 0.86721 0.87702 0.84541 1.90494 1.41373 1.30654 1.85971 1.41810 1.42956 1.29291 1.04267 1.19782 1.27791 1.12851 0.83055 0.87613 1.25334 0.96432 0.96494 0.99457 1.69619 1.33873 1.24676 1.25251 0.85755 0.78588 0.79240 0.80489 1.19116 1.20588 1.20583 0.89236 0.93338 0.92743 0.88663 0.93228 0.92948 0.88524 0.90011 0.89929 0.75193 0.89884 0.89884 0.77038 0.91602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.92 8.43 37.16 0.31 -1.61 16 2 C -0.10 -1.13 2.44 -90.48 -0.22 -1.35 16 3 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 4 C 0.06 0.60 6.25 37.21 0.23 0.83 16 5 O -0.38 -4.07 10.19 -35.23 -0.36 -4.43 16 6 C 0.06 0.57 6.84 37.21 0.25 0.82 16 7 C -0.15 -1.55 4.93 -26.59 -0.13 -1.68 16 8 C -0.10 -1.18 2.40 -91.59 -0.22 -1.40 16 9 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 10 C 0.52 7.72 6.86 -10.99 -0.08 7.65 16 11 O -0.54 -9.51 13.49 5.56 0.07 -9.43 16 12 N -0.71 -11.31 5.43 -61.47 -0.33 -11.64 16 13 C 0.11 1.96 6.15 -5.19 -0.03 1.92 16 14 C 0.43 9.65 7.85 -10.99 -0.09 9.56 16 15 O -0.60 -15.04 15.24 5.54 0.08 -14.96 16 16 N -0.55 -13.46 5.29 -10.97 -0.06 -13.52 16 17 C -0.31 -8.23 9.68 -14.93 -0.14 -8.37 16 18 H 0.11 2.97 7.16 -52.49 -0.38 2.60 16 19 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 20 N -0.89 -23.71 13.05 55.50 0.72 -22.98 16 21 Si 0.93 20.35 29.55 -169.99 -5.02 15.32 16 22 H -0.27 -5.81 7.11 56.52 0.40 -5.40 16 23 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 24 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 25 H 0.09 1.31 5.28 -51.93 -0.27 1.04 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.05 0.66 6.14 -51.93 -0.32 0.34 16 28 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.08 0.93 6.63 -51.93 -0.34 0.58 16 33 H 0.08 0.81 7.67 -51.93 -0.40 0.41 16 34 H 0.41 6.45 6.93 -40.82 -0.28 6.16 16 35 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 36 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 37 H 0.40 9.36 7.90 -40.82 -0.32 9.03 16 38 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 LS Contribution 310.18 15.07 4.67 4.67 Total: -1.00 -30.51 310.18 -5.68 -36.19 By element: Atomic # 1 Polarization: 19.09 SS G_CDS: -5.26 Total: 13.83 kcal Atomic # 6 Polarization: 7.15 SS G_CDS: -0.21 Total: 6.94 kcal Atomic # 7 Polarization: -48.48 SS G_CDS: 0.33 Total: -48.15 kcal Atomic # 8 Polarization: -28.62 SS G_CDS: -0.20 Total: -28.82 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.51 -5.68 -36.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117510299.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.908 kcal (2) G-P(sol) polarization free energy of solvation -30.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds