Wall clock time and date at job start Mon Mar 30 2020 02:17:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.57263 * 2 1 4 4 C 1.53096 * 109.52137 * 239.85002 * 2 1 3 5 5 O 1.42930 * 109.41898 * 297.70252 * 4 2 1 6 6 C 1.42904 * 114.08305 * 298.84863 * 5 4 2 7 7 C 1.53093 * 109.42351 * 61.15476 * 6 5 4 8 8 C 1.53178 * 109.52574 * 120.16367 * 2 1 3 9 9 H 1.08996 * 109.54450 * 182.79195 * 8 2 1 10 10 C 1.50697 * 109.54073 * 303.05748 * 8 2 1 11 11 O 1.21282 * 120.00191 * 359.55614 * 10 8 2 12 12 N 1.34773 * 120.00051 * 179.55429 * 10 8 2 13 13 C 1.46504 * 120.00306 * 179.97438 * 12 10 8 14 14 C 1.50694 * 109.47126 * 179.97438 * 13 12 10 15 15 O 1.21297 * 120.00395 * 0.02562 * 14 13 12 16 16 N 1.34773 * 120.00123 * 180.02562 * 14 13 12 17 17 C 1.37099 * 120.00501 * 180.02562 * 16 14 13 18 18 H 1.07999 * 119.99798 * 359.97438 * 17 16 14 19 19 C 1.38948 * 120.00319 * 180.02562 * 17 16 14 20 20 N 1.31411 * 120.00091 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99996 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47336 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47648 * 119.99864 * 21 19 17 24 24 H 1.48510 * 109.46814 * 239.99172 * 21 19 17 25 25 H 1.09002 * 109.47179 * 299.83776 * 1 2 3 26 26 H 1.08993 * 109.47426 * 59.83978 * 1 2 3 27 27 H 1.09003 * 109.46744 * 179.83977 * 1 2 3 28 28 H 1.09003 * 109.48254 * 57.67895 * 4 2 1 29 29 H 1.08992 * 109.48305 * 177.71017 * 4 2 1 30 30 H 1.09002 * 109.48241 * 301.16394 * 6 5 4 31 31 H 1.08999 * 109.47648 * 181.13988 * 6 5 4 32 32 H 1.09000 * 109.52228 * 62.29092 * 7 6 5 33 33 H 1.08998 * 109.52401 * 182.47941 * 7 6 5 34 34 H 0.97004 * 119.99946 * 0.02562 * 12 10 8 35 35 H 1.08999 * 109.47082 * 300.00323 * 13 12 10 36 36 H 1.08998 * 109.46584 * 60.00383 * 13 12 10 37 37 H 0.97005 * 120.00253 * 0.02562 * 16 14 13 38 38 H 0.96998 * 120.00576 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0271 0.0000 4 6 2.0416 -0.7247 -1.2477 5 8 1.6098 -2.0869 -1.2167 6 6 2.0971 -2.8277 -0.0960 7 6 1.5877 -2.1874 1.1979 8 6 2.0420 -0.7254 1.2482 9 1 3.1308 -0.6825 1.2740 10 6 1.4803 -0.0651 2.4809 11 8 0.7493 0.8967 2.3740 12 7 1.7903 -0.5434 3.7022 13 6 1.2448 0.0988 4.9006 14 6 1.7400 -0.6232 6.1271 15 8 2.4767 -1.5799 6.0116 16 7 1.3645 -0.2060 7.3523 17 6 1.8155 -0.8626 8.4682 18 1 2.4714 -1.7144 8.3654 19 6 1.4279 -0.4327 9.7314 20 7 0.6294 0.6034 9.8566 21 14 2.0429 -1.3269 11.2518 22 1 2.9226 -2.4512 10.8429 23 1 2.8092 -0.3834 12.1050 24 1 0.8854 -1.8571 12.0163 25 1 -0.3634 0.5113 0.8914 26 1 -0.3634 0.5163 -0.8885 27 1 -0.3633 -1.0277 -0.0029 28 1 1.6452 -0.2381 -2.1390 29 1 3.1307 -0.6890 -1.2680 30 1 3.1871 -2.8196 -0.1011 31 1 1.7409 -3.8560 -0.1575 32 1 0.4989 -2.2317 1.2222 33 1 1.9942 -2.7247 2.0548 34 1 2.3753 -1.3125 3.7877 35 1 1.5691 1.1389 4.9350 36 1 0.1559 0.0585 4.8706 37 1 0.7751 0.5588 7.4448 38 1 0.3590 0.9038 10.7384 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117510299.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:24 Heat of formation + Delta-G solvation = -154.832523 kcal Electronic energy + Delta-G solvation = -20892.942399 eV Core-core repulsion = 17540.954193 eV Total energy + Delta-G solvation = -3351.988206 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.68645 -40.34131 -39.39289 -36.29827 -35.41710 -35.13185 -33.40151 -32.77256 -29.70475 -27.93867 -26.89821 -25.91438 -24.04494 -21.87357 -21.40218 -20.27060 -19.93074 -18.57761 -17.58391 -17.16727 -17.06262 -16.77752 -16.59725 -16.24118 -15.97770 -15.70357 -15.46846 -15.14791 -14.57832 -14.52505 -14.00328 -13.75924 -13.56494 -13.44166 -12.98624 -12.90976 -12.48937 -12.46011 -12.32792 -12.11780 -12.00987 -11.59222 -11.51014 -11.33106 -10.90894 -10.58056 -10.34143 -10.13677 -10.05415 -8.52632 -6.02982 1.34106 1.42418 1.56275 1.56671 1.89238 2.02015 2.31121 3.01190 3.11542 3.14611 3.52265 3.69152 3.76376 3.99448 4.14516 4.24004 4.26457 4.39819 4.40731 4.51912 4.60108 4.64751 4.72862 4.80170 4.84440 4.94131 5.10082 5.18955 5.25073 5.33258 5.37260 5.58421 5.90522 6.30333 6.44231 6.52869 7.02017 7.18123 7.42765 7.92391 8.64494 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.044607 B = 0.003414 C = 0.003240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.558126 B = 8199.022736 C = 8639.683514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.104 4.104 3 H 0.083 0.917 4 C 0.067 3.933 5 O -0.396 6.396 6 C 0.064 3.936 7 C -0.148 4.148 8 C -0.099 4.099 9 H 0.119 0.881 10 C 0.516 3.484 11 O -0.568 6.568 12 N -0.707 5.707 13 C 0.121 3.879 14 C 0.432 3.568 15 O -0.623 6.623 16 N -0.560 5.560 17 C -0.337 4.337 18 H 0.087 0.913 19 C -0.011 4.011 20 N -0.917 5.917 21 Si 0.997 3.003 22 H -0.269 1.269 23 H -0.271 1.271 24 H -0.271 1.271 25 H 0.061 0.939 26 H 0.058 0.942 27 H 0.049 0.951 28 H 0.107 0.893 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.108 0.892 32 H 0.066 0.934 33 H 0.086 0.914 34 H 0.413 0.587 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.398 0.602 38 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.668 -2.599 -18.272 18.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.123 4.123 3 H 0.101 0.899 4 C -0.009 4.009 5 O -0.315 6.315 6 C -0.013 4.013 7 C -0.186 4.186 8 C -0.120 4.120 9 H 0.137 0.863 10 C 0.304 3.696 11 O -0.448 6.448 12 N -0.361 5.361 13 C -0.007 4.007 14 C 0.219 3.781 15 O -0.511 6.511 16 N -0.195 5.195 17 C -0.466 4.466 18 H 0.105 0.895 19 C -0.211 4.211 20 N -0.557 5.557 21 Si 0.820 3.180 22 H -0.193 1.193 23 H -0.196 1.196 24 H -0.197 1.197 25 H 0.080 0.920 26 H 0.077 0.923 27 H 0.068 0.932 28 H 0.125 0.875 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.126 0.874 32 H 0.084 0.916 33 H 0.105 0.895 34 H 0.251 0.749 35 H 0.111 0.889 36 H 0.109 0.891 37 H 0.232 0.768 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.431 -2.530 -18.360 18.692 hybrid contribution 0.107 0.093 1.490 1.496 sum 2.538 -2.438 -16.870 17.233 Atomic orbital electron populations 1.22010 0.94976 1.01580 1.02592 1.21552 0.97182 0.99901 0.93642 0.89856 1.22747 0.99321 0.81560 0.97300 1.87922 1.74732 1.23113 1.45762 1.22675 0.99120 0.95844 0.83646 1.22243 1.02314 0.93349 1.00703 1.21435 1.02653 0.96474 0.91466 0.86291 1.21111 0.80259 0.83475 0.84744 1.90597 1.38319 1.29035 1.86860 1.45789 1.51108 1.34740 1.04474 1.20753 0.99636 0.97061 0.83243 1.20434 0.85386 0.87040 0.85196 1.90470 1.42266 1.31806 1.86592 1.41864 1.43520 1.29571 1.04558 1.19781 1.28943 1.13358 0.84543 0.89521 1.26135 0.96212 0.97046 1.01743 1.69683 1.34298 1.25432 1.26249 0.84808 0.78219 0.78075 0.76864 1.19347 1.19640 1.19669 0.92003 0.92320 0.93156 0.87496 0.91282 0.91135 0.87356 0.91562 0.89503 0.74885 0.88929 0.89115 0.76760 0.91065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.65 8.43 71.98 0.61 -3.04 16 2 C -0.10 -2.07 2.44 -10.70 -0.03 -2.10 16 3 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 4 C 0.07 1.05 6.25 72.01 0.45 1.50 16 5 O -0.40 -7.49 10.19 -148.98 -1.52 -9.01 16 6 C 0.06 0.98 6.84 72.01 0.49 1.47 16 7 C -0.15 -2.79 4.93 30.68 0.15 -2.64 16 8 C -0.10 -2.07 2.40 -11.42 -0.03 -2.10 16 9 H 0.12 2.00 8.14 -2.39 -0.02 1.98 16 10 C 0.52 14.99 6.86 87.66 0.60 15.60 16 11 O -0.57 -19.80 13.49 -3.03 -0.04 -19.84 16 12 N -0.71 -22.16 5.43 -466.80 -2.54 -24.69 16 13 C 0.12 4.33 6.15 85.63 0.53 4.86 16 14 C 0.43 19.65 7.85 87.66 0.69 20.34 16 15 O -0.62 -31.56 15.24 -3.08 -0.05 -31.61 16 16 N -0.56 -27.87 5.29 -306.99 -1.62 -29.49 16 17 C -0.34 -18.42 9.68 84.04 0.81 -17.60 16 18 H 0.09 4.99 7.16 -2.91 -0.02 4.96 16 19 C -0.01 -0.56 5.50 84.93 0.47 -0.09 16 20 N -0.92 -48.45 13.05 21.66 0.28 -48.17 16 21 Si 1.00 41.39 29.55 68.60 2.03 43.42 16 22 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 23 H -0.27 -10.82 7.11 99.48 0.71 -10.12 16 24 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 25 H 0.06 1.82 5.28 -2.39 -0.01 1.81 16 26 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.05 1.20 6.14 -2.39 -0.01 1.19 16 28 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.07 1.46 6.63 -2.39 -0.02 1.44 16 33 H 0.09 1.56 7.67 -2.39 -0.02 1.54 16 34 H 0.41 12.64 6.93 -92.71 -0.64 12.00 16 35 H 0.09 3.17 8.14 -2.39 -0.02 3.15 16 36 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16 37 H 0.40 19.12 7.90 -92.70 -0.73 18.39 16 38 H 0.28 13.80 8.31 -92.71 -0.77 13.03 16 Total: -1.00 -64.97 310.18 1.01 -63.96 By element: Atomic # 1 Polarization: 39.52 SS G_CDS: -0.28 Total: 39.24 kcal Atomic # 6 Polarization: 11.45 SS G_CDS: 4.74 Total: 16.19 kcal Atomic # 7 Polarization: -98.48 SS G_CDS: -3.88 Total: -102.35 kcal Atomic # 8 Polarization: -58.85 SS G_CDS: -1.61 Total: -60.46 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 2.03 Total: 43.42 kcal Total: -64.97 1.01 -63.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117510299.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.875 kcal (2) G-P(sol) polarization free energy of solvation -64.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds