Wall clock time and date at job start Mon Mar 30 2020 02:28:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21289 * 119.99675 * 2 1 4 4 N 1.34780 * 120.00369 * 179.97438 * 2 1 3 5 5 C 1.46498 * 119.99936 * 179.97438 * 4 2 1 6 6 H 1.09003 * 109.47554 * 324.99811 * 5 4 2 7 7 C 1.52997 * 109.47213 * 85.00428 * 5 4 2 8 8 C 1.50703 * 109.46829 * 205.00143 * 5 4 2 9 9 O 1.21273 * 120.00236 * 332.96451 * 8 5 4 10 10 N 1.34776 * 119.99961 * 152.96598 * 8 5 4 11 11 C 1.47026 * 125.64756 * 4.95428 * 10 8 5 12 12 C 1.54329 * 107.27090 * 181.01940 * 11 10 8 13 13 C 1.55153 * 102.94129 * 22.19490 * 12 11 10 14 14 O 1.42900 * 111.00651 * 82.56850 * 13 12 11 15 15 C 1.50702 * 111.00402 * 206.38402 * 13 12 11 16 16 H 1.08005 * 119.99814 * 118.54352 * 15 13 12 17 17 C 1.37872 * 120.00015 * 298.54493 * 15 13 12 18 18 N 1.31521 * 119.99949 * 359.97438 * 17 15 13 19 19 Si 1.86798 * 120.00188 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47129 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47270 * 120.00208 * 19 17 15 22 22 H 1.48497 * 109.46972 * 240.00106 * 19 17 15 23 23 C 1.47423 * 125.64934 * 184.64296 * 10 8 5 24 24 H 1.09002 * 109.46709 * 239.99609 * 1 2 3 25 25 H 1.08995 * 109.47469 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.46754 * 120.00347 * 1 2 3 27 27 H 0.96995 * 119.99703 * 0.02562 * 4 2 1 28 28 H 1.08997 * 109.47435 * 62.94432 * 7 5 4 29 29 H 1.09003 * 109.47521 * 182.94734 * 7 5 4 30 30 H 1.09004 * 109.47092 * 302.94478 * 7 5 4 31 31 H 1.08997 * 109.88101 * 300.43828 * 11 10 8 32 32 H 1.09004 * 109.88271 * 61.60509 * 11 10 8 33 33 H 1.09001 * 110.71713 * 140.55662 * 12 11 10 34 34 H 1.08990 * 110.72130 * 263.65061 * 12 11 10 35 35 H 0.96695 * 114.00143 * 61.45680 * 14 13 12 36 36 H 0.96992 * 119.99851 * 179.97438 * 18 17 15 37 37 H 1.09000 * 110.36724 * 274.74883 * 23 10 8 38 38 H 1.08994 * 110.36440 * 37.07306 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6459 -1.1671 0.0000 6 1 4.0090 -0.3257 -0.5902 7 6 4.1565 -1.0405 1.4367 8 6 4.1481 -2.4552 -0.5999 9 8 3.4683 -3.4577 -0.5397 10 7 5.3526 -2.4930 -1.2032 11 6 6.3190 -1.3863 -1.2574 12 6 7.5353 -1.8794 -2.0694 13 6 6.9446 -3.0437 -2.9076 14 8 6.2934 -2.5515 -4.0805 15 6 8.0109 -4.0466 -3.2659 16 1 7.9299 -5.0671 -2.9217 17 6 9.0899 -3.6612 -4.0329 18 7 9.1882 -2.4186 -4.4523 19 14 10.4113 -4.9044 -4.4776 20 1 10.0684 -6.2235 -3.8880 21 1 10.4966 -5.0291 -5.9548 22 1 11.7196 -4.4488 -3.9429 23 6 5.9223 -3.6531 -1.9125 24 1 -0.3633 -0.5139 0.8900 25 1 -0.3634 1.0276 0.0005 26 1 -0.3633 -0.5139 -0.8900 27 1 1.6960 -2.0072 0.0005 28 1 3.8372 -1.9084 2.0136 29 1 5.2452 -0.9877 1.4321 30 1 3.7508 -0.1350 1.8880 31 1 5.8687 -0.5248 -1.7506 32 1 6.6314 -1.1171 -0.2484 33 1 7.9116 -1.0889 -2.7187 34 1 8.3219 -2.2385 -1.4059 35 1 6.8791 -2.0760 -4.6854 36 1 9.9475 -2.1475 -4.9915 37 1 6.4237 -4.3186 -1.2099 38 1 5.1412 -4.1887 -2.4521 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118218380.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:02 Heat of formation + Delta-G solvation = -126.562416 kcal Electronic energy + Delta-G solvation = -21453.213095 eV Core-core repulsion = 18102.450773 eV Total energy + Delta-G solvation = -3350.762322 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.27080 -39.10950 -37.40148 -34.87029 -34.40385 -32.27332 -31.66123 -29.84554 -28.95859 -28.28231 -25.57317 -23.98185 -22.16327 -20.54695 -19.83810 -19.09746 -17.55170 -17.13469 -16.43346 -16.06616 -15.47386 -15.06844 -14.99495 -14.59899 -14.23163 -13.92588 -13.66373 -13.17044 -12.92627 -12.68264 -12.63178 -12.32996 -12.11371 -11.96485 -11.84783 -11.53681 -11.39321 -11.36232 -10.94530 -10.65898 -10.49063 -10.08368 -9.99830 -9.61532 -9.46110 -9.13841 -8.73404 -8.27960 -8.12655 -6.33155 -4.41509 2.52819 2.75415 3.05733 3.16036 3.25518 3.29684 3.58052 4.23132 4.60477 4.75835 4.94852 5.07798 5.11065 5.14834 5.23494 5.47209 5.49524 5.63548 5.68176 5.71698 5.83909 5.94152 6.07010 6.18350 6.32767 6.35446 6.54444 6.81511 6.86204 7.23251 7.29055 7.45379 7.68630 7.92950 7.98112 8.14925 8.40542 8.61658 9.25367 9.34196 10.74341 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.039649 B = 0.004244 C = 0.004180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.029963 B = 6595.263193 C = 6697.009540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.512 3.488 3 O -0.549 6.549 4 N -0.714 5.714 5 C 0.127 3.873 6 H 0.108 0.892 7 C -0.154 4.154 8 C 0.522 3.478 9 O -0.554 6.554 10 N -0.599 5.599 11 C 0.093 3.907 12 C -0.136 4.136 13 C 0.248 3.752 14 O -0.583 6.583 15 C -0.536 4.536 16 H 0.066 0.934 17 C 0.073 3.927 18 N -0.894 5.894 19 Si 0.903 3.097 20 H -0.271 1.271 21 H -0.282 1.282 22 H -0.282 1.282 23 C 0.121 3.879 24 H 0.088 0.912 25 H 0.092 0.908 26 H 0.089 0.911 27 H 0.410 0.590 28 H 0.063 0.937 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.088 0.912 34 H 0.069 0.931 35 H 0.381 0.619 36 H 0.268 0.732 37 H 0.074 0.926 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.588 3.940 8.557 13.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.299 3.701 3 O -0.427 6.427 4 N -0.368 5.368 5 C 0.018 3.982 6 H 0.126 0.874 7 C -0.213 4.213 8 C 0.309 3.691 9 O -0.434 6.434 10 N -0.331 5.331 11 C -0.030 4.030 12 C -0.174 4.174 13 C 0.207 3.793 14 O -0.391 6.391 15 C -0.574 4.574 16 H 0.084 0.916 17 C -0.130 4.130 18 N -0.533 5.533 19 Si 0.730 3.270 20 H -0.196 1.196 21 H -0.208 1.208 22 H -0.208 1.208 23 C -0.001 4.001 24 H 0.107 0.893 25 H 0.111 0.889 26 H 0.108 0.892 27 H 0.247 0.753 28 H 0.082 0.918 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.106 0.894 34 H 0.088 0.912 35 H 0.231 0.769 36 H 0.078 0.922 37 H 0.092 0.908 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -9.977 4.006 8.796 13.891 hybrid contribution 1.163 -0.683 -0.556 1.459 sum -8.814 3.323 8.240 12.515 Atomic orbital electron populations 1.21897 0.91375 1.05454 1.04441 1.20833 0.90695 0.83221 0.75338 1.90722 1.70844 1.31354 1.49753 1.45887 1.06046 1.09662 1.75220 1.20755 0.81582 0.97320 0.98514 0.87447 1.22043 1.01982 1.03000 0.94238 1.20044 0.80793 0.89750 0.78542 1.90642 1.56690 1.35996 1.60053 1.48580 1.15848 1.16262 1.52369 1.22323 0.91202 0.89504 0.99925 1.23188 0.94296 1.01335 0.98617 1.19657 0.87384 0.89933 0.82306 1.86132 1.41385 1.76931 1.34683 1.21466 1.05441 0.96793 1.33716 0.91628 1.24988 0.97816 0.95513 0.94644 1.69722 1.31339 1.16233 1.36049 0.86358 0.80934 0.81340 0.78332 1.19570 1.20754 1.20806 1.22473 0.96598 0.87418 0.93589 0.89345 0.88912 0.89238 0.75342 0.91762 0.90870 0.91024 0.92052 0.92433 0.89361 0.91195 0.76868 0.92223 0.90769 0.91093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.38 10.32 36.00 0.37 -1.01 16 2 C 0.51 6.57 7.90 -10.99 -0.09 6.48 16 3 O -0.55 -9.17 16.75 5.55 0.09 -9.08 16 4 N -0.71 -9.35 5.06 -54.93 -0.28 -9.63 16 5 C 0.13 1.88 2.47 -69.08 -0.17 1.71 16 6 H 0.11 1.70 6.63 -51.93 -0.34 1.36 16 7 C -0.15 -1.94 9.47 37.16 0.35 -1.58 16 8 C 0.52 9.43 7.04 -10.98 -0.08 9.35 16 9 O -0.55 -11.20 16.33 5.56 0.09 -11.11 16 10 N -0.60 -11.48 3.32 -170.37 -0.57 -12.05 16 11 C 0.09 1.64 6.29 -3.06 -0.02 1.62 16 12 C -0.14 -2.82 5.37 -24.90 -0.13 -2.96 16 13 C 0.25 5.81 0.87 -89.50 -0.08 5.73 16 14 O -0.58 -14.51 13.17 -35.23 -0.46 -14.98 16 15 C -0.54 -13.62 8.27 -34.44 -0.28 -13.90 16 16 H 0.07 1.67 7.79 -52.48 -0.41 1.26 16 17 C 0.07 1.84 5.29 -17.82 -0.09 1.74 16 18 N -0.89 -22.51 10.76 55.43 0.60 -21.92 16 19 Si 0.90 19.80 29.54 -169.99 -5.02 14.78 16 20 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 21 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 22 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 23 C 0.12 2.61 6.08 -2.41 -0.01 2.60 16 24 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.09 0.71 8.12 -51.93 -0.42 0.29 16 26 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.41 4.92 7.81 -40.82 -0.32 4.60 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.07 0.87 7.32 -51.93 -0.38 0.49 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.06 1.05 7.68 -51.93 -0.40 0.65 16 32 H 0.06 0.86 7.32 -51.93 -0.38 0.48 16 33 H 0.09 1.93 7.55 -51.93 -0.39 1.54 16 34 H 0.07 1.46 8.04 -51.93 -0.42 1.05 16 35 H 0.38 9.48 7.56 45.56 0.34 9.82 16 36 H 0.27 6.47 8.31 -40.82 -0.34 6.13 16 37 H 0.07 1.55 8.04 -51.93 -0.42 1.13 16 38 H 0.07 1.63 8.08 -51.93 -0.42 1.21 16 LS Contribution 318.43 15.07 4.80 4.80 Total: -1.00 -29.64 318.43 -5.77 -35.40 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: -4.78 Total: 13.99 kcal Atomic # 6 Polarization: 10.02 SS G_CDS: -0.24 Total: 9.78 kcal Atomic # 7 Polarization: -43.35 SS G_CDS: -0.25 Total: -43.60 kcal Atomic # 8 Polarization: -34.88 SS G_CDS: -0.28 Total: -35.16 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.78 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -29.64 -5.77 -35.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118218380.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.158 kcal (2) G-P(sol) polarization free energy of solvation -29.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds