Wall clock time and date at job start Mon Mar 30 2020 02:28:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21289 * 119.99675 * 2 1 4 4 N 1.34780 * 120.00369 * 179.97438 * 2 1 3 5 5 C 1.46498 * 119.99936 * 179.97438 * 4 2 1 6 6 H 1.09003 * 109.47554 * 324.99811 * 5 4 2 7 7 C 1.52997 * 109.47213 * 85.00428 * 5 4 2 8 8 C 1.50703 * 109.46829 * 205.00143 * 5 4 2 9 9 O 1.21273 * 120.00236 * 332.96451 * 8 5 4 10 10 N 1.34776 * 119.99961 * 152.96598 * 8 5 4 11 11 C 1.47026 * 125.64756 * 4.95428 * 10 8 5 12 12 C 1.54329 * 107.27090 * 181.01940 * 11 10 8 13 13 C 1.55153 * 102.94129 * 22.19490 * 12 11 10 14 14 O 1.42900 * 111.00651 * 82.56850 * 13 12 11 15 15 C 1.50702 * 111.00402 * 206.38402 * 13 12 11 16 16 H 1.08005 * 119.99814 * 118.54352 * 15 13 12 17 17 C 1.37872 * 120.00015 * 298.54493 * 15 13 12 18 18 N 1.31521 * 119.99949 * 359.97438 * 17 15 13 19 19 Si 1.86798 * 120.00188 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47129 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47270 * 120.00208 * 19 17 15 22 22 H 1.48497 * 109.46972 * 240.00106 * 19 17 15 23 23 C 1.47423 * 125.64934 * 184.64296 * 10 8 5 24 24 H 1.09002 * 109.46709 * 239.99609 * 1 2 3 25 25 H 1.08995 * 109.47469 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.46754 * 120.00347 * 1 2 3 27 27 H 0.96995 * 119.99703 * 0.02562 * 4 2 1 28 28 H 1.08997 * 109.47435 * 62.94432 * 7 5 4 29 29 H 1.09003 * 109.47521 * 182.94734 * 7 5 4 30 30 H 1.09004 * 109.47092 * 302.94478 * 7 5 4 31 31 H 1.08997 * 109.88101 * 300.43828 * 11 10 8 32 32 H 1.09004 * 109.88271 * 61.60509 * 11 10 8 33 33 H 1.09001 * 110.71713 * 140.55662 * 12 11 10 34 34 H 1.08990 * 110.72130 * 263.65061 * 12 11 10 35 35 H 0.96695 * 114.00143 * 61.45680 * 14 13 12 36 36 H 0.96992 * 119.99851 * 179.97438 * 18 17 15 37 37 H 1.09000 * 110.36724 * 274.74883 * 23 10 8 38 38 H 1.08994 * 110.36440 * 37.07306 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6459 -1.1671 0.0000 6 1 4.0090 -0.3257 -0.5902 7 6 4.1565 -1.0405 1.4367 8 6 4.1481 -2.4552 -0.5999 9 8 3.4683 -3.4577 -0.5397 10 7 5.3526 -2.4930 -1.2032 11 6 6.3190 -1.3863 -1.2574 12 6 7.5353 -1.8794 -2.0694 13 6 6.9446 -3.0437 -2.9076 14 8 6.2934 -2.5515 -4.0805 15 6 8.0109 -4.0466 -3.2659 16 1 7.9299 -5.0671 -2.9217 17 6 9.0899 -3.6612 -4.0329 18 7 9.1882 -2.4186 -4.4523 19 14 10.4113 -4.9044 -4.4776 20 1 10.0684 -6.2235 -3.8880 21 1 10.4966 -5.0291 -5.9548 22 1 11.7196 -4.4488 -3.9429 23 6 5.9223 -3.6531 -1.9125 24 1 -0.3633 -0.5139 0.8900 25 1 -0.3634 1.0276 0.0005 26 1 -0.3633 -0.5139 -0.8900 27 1 1.6960 -2.0072 0.0005 28 1 3.8372 -1.9084 2.0136 29 1 5.2452 -0.9877 1.4321 30 1 3.7508 -0.1350 1.8880 31 1 5.8687 -0.5248 -1.7506 32 1 6.6314 -1.1171 -0.2484 33 1 7.9116 -1.0889 -2.7187 34 1 8.3219 -2.2385 -1.4059 35 1 6.8791 -2.0760 -4.6854 36 1 9.9475 -2.1475 -4.9915 37 1 6.4237 -4.3186 -1.2099 38 1 5.1412 -4.1887 -2.4521 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118218380.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:01 Heat of formation + Delta-G solvation = -149.684047 kcal Electronic energy + Delta-G solvation = -21454.215724 eV Core-core repulsion = 18102.450773 eV Total energy + Delta-G solvation = -3351.764951 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.59381 -40.39569 -39.02686 -36.15702 -36.05326 -34.22244 -32.76216 -31.39145 -30.13856 -29.64652 -27.28133 -25.37344 -23.63490 -21.79781 -21.41133 -20.52120 -19.13594 -18.70311 -17.67774 -17.35913 -16.92434 -16.79867 -16.24411 -16.16415 -15.70017 -15.39779 -14.84984 -14.74100 -14.23895 -14.02149 -13.72626 -13.60280 -13.35353 -13.24359 -13.17134 -13.05724 -12.99696 -12.73280 -12.64904 -12.44831 -12.24696 -11.86756 -11.29820 -11.09294 -10.98443 -10.64947 -10.30058 -10.15611 -9.67645 -8.24233 -6.39232 1.32099 1.41422 1.46352 1.55711 1.59688 1.76284 2.34391 2.41746 3.00438 3.28247 3.75861 3.85176 3.95691 3.99061 4.05231 4.28633 4.31436 4.52506 4.56379 4.59810 4.64847 4.66967 4.72043 4.84264 5.07018 5.08032 5.14276 5.19114 5.28422 5.42963 5.53117 5.76832 6.06914 6.46595 6.47191 6.65148 6.92404 7.15736 7.30482 7.38499 8.81801 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.039649 B = 0.004244 C = 0.004180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.029963 B = 6595.263193 C = 6697.009540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.508 3.492 3 O -0.592 6.592 4 N -0.712 5.712 5 C 0.133 3.867 6 H 0.099 0.901 7 C -0.147 4.147 8 C 0.522 3.478 9 O -0.578 6.578 10 N -0.604 5.604 11 C 0.100 3.900 12 C -0.126 4.126 13 C 0.233 3.767 14 O -0.593 6.593 15 C -0.561 4.561 16 H 0.056 0.944 17 C 0.038 3.962 18 N -0.906 5.906 19 Si 0.959 3.041 20 H -0.273 1.273 21 H -0.282 1.282 22 H -0.276 1.276 23 C 0.127 3.873 24 H 0.115 0.885 25 H 0.096 0.904 26 H 0.106 0.894 27 H 0.416 0.584 28 H 0.068 0.932 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.093 0.907 33 H 0.075 0.925 34 H 0.066 0.934 35 H 0.378 0.622 36 H 0.271 0.729 37 H 0.078 0.922 38 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.111 4.273 9.646 14.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.298 3.702 3 O -0.472 6.472 4 N -0.367 5.367 5 C 0.024 3.976 6 H 0.117 0.883 7 C -0.205 4.205 8 C 0.310 3.690 9 O -0.458 6.458 10 N -0.335 5.335 11 C -0.022 4.022 12 C -0.165 4.165 13 C 0.193 3.807 14 O -0.402 6.402 15 C -0.599 4.599 16 H 0.075 0.925 17 C -0.164 4.164 18 N -0.545 5.545 19 Si 0.785 3.215 20 H -0.198 1.198 21 H -0.208 1.208 22 H -0.201 1.201 23 C 0.004 3.996 24 H 0.133 0.867 25 H 0.115 0.885 26 H 0.124 0.876 27 H 0.254 0.746 28 H 0.087 0.913 29 H 0.101 0.899 30 H 0.096 0.904 31 H 0.086 0.914 32 H 0.111 0.889 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.227 0.773 36 H 0.080 0.920 37 H 0.096 0.904 38 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -10.520 4.338 9.898 15.082 hybrid contribution 1.295 -0.814 -0.928 1.789 sum -9.225 3.524 8.970 13.341 Atomic orbital electron populations 1.21933 0.87360 1.06462 1.06487 1.21705 0.92507 0.82174 0.73834 1.90704 1.72078 1.32691 1.51760 1.45960 1.05320 1.10317 1.75095 1.20679 0.82839 0.94607 0.99488 0.88280 1.22010 1.02568 1.03464 0.92466 1.20625 0.79952 0.90628 0.77786 1.90627 1.57120 1.37234 1.60862 1.48609 1.16662 1.15761 1.52477 1.22323 0.89534 0.88863 1.01438 1.22967 0.95386 0.99839 0.98264 1.19840 0.87725 0.90814 0.82339 1.86119 1.41708 1.76988 1.35385 1.21689 1.06575 0.96947 1.34670 0.92550 1.25593 0.99315 0.97023 0.94465 1.69787 1.31729 1.17082 1.35935 0.85487 0.78867 0.79329 0.77788 1.19753 1.20773 1.20110 1.22234 0.95667 0.88217 0.93439 0.86679 0.88476 0.87583 0.74614 0.91270 0.89932 0.90436 0.91363 0.88932 0.90685 0.91507 0.77266 0.91992 0.90394 0.93185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.16 10.32 71.23 0.74 -1.42 16 2 C 0.51 12.14 7.90 87.66 0.69 12.83 16 3 O -0.59 -19.13 16.75 -3.06 -0.05 -19.18 16 4 N -0.71 -17.49 5.06 -446.09 -2.26 -19.74 16 5 C 0.13 3.73 2.47 44.25 0.11 3.84 16 6 H 0.10 3.00 6.63 -2.39 -0.02 2.99 16 7 C -0.15 -3.35 9.47 71.98 0.68 -2.67 16 8 C 0.52 18.30 7.04 87.66 0.62 18.92 16 9 O -0.58 -22.94 16.33 -3.01 -0.05 -22.99 16 10 N -0.60 -22.66 3.32 -811.33 -2.70 -25.36 16 11 C 0.10 3.40 6.29 86.73 0.55 3.94 16 12 C -0.13 -5.19 5.37 31.78 0.17 -5.02 16 13 C 0.23 11.02 0.87 -10.07 -0.01 11.02 16 14 O -0.59 -30.05 13.17 -148.98 -1.96 -32.02 16 15 C -0.56 -28.77 8.27 25.60 0.21 -28.56 16 16 H 0.06 2.91 7.79 -2.91 -0.02 2.89 16 17 C 0.04 1.88 5.29 84.65 0.45 2.33 16 18 N -0.91 -45.58 10.76 21.45 0.23 -45.34 16 19 Si 0.96 40.43 29.54 68.60 2.03 42.46 16 20 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 21 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 22 H -0.28 -11.27 7.11 99.48 0.71 -10.56 16 23 C 0.13 5.54 6.08 86.93 0.53 6.06 16 24 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.10 1.24 8.12 -2.39 -0.02 1.22 16 26 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.42 9.26 7.81 -92.71 -0.72 8.53 16 28 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.08 1.72 7.32 -2.39 -0.02 1.71 16 30 H 0.08 1.71 8.14 -2.38 -0.02 1.70 16 31 H 0.07 2.24 7.68 -2.39 -0.02 2.22 16 32 H 0.09 2.51 7.32 -2.38 -0.02 2.50 16 33 H 0.07 3.28 7.55 -2.39 -0.02 3.26 16 34 H 0.07 2.76 8.04 -2.39 -0.02 2.74 16 35 H 0.38 19.17 7.56 -74.06 -0.56 18.61 16 36 H 0.27 12.97 8.31 -92.71 -0.77 12.20 16 37 H 0.08 3.29 8.04 -2.39 -0.02 3.27 16 38 H 0.05 2.35 8.08 -2.39 -0.02 2.33 16 Total: -1.00 -63.48 318.43 -0.23 -63.70 By element: Atomic # 1 Polarization: 37.40 SS G_CDS: -0.20 Total: 37.20 kcal Atomic # 6 Polarization: 16.54 SS G_CDS: 4.73 Total: 21.27 kcal Atomic # 7 Polarization: -85.72 SS G_CDS: -4.72 Total: -90.44 kcal Atomic # 8 Polarization: -72.13 SS G_CDS: -2.06 Total: -74.19 kcal Atomic # 14 Polarization: 40.43 SS G_CDS: 2.03 Total: 42.46 kcal Total: -63.48 -0.23 -63.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118218380.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.981 kcal (2) G-P(sol) polarization free energy of solvation -63.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds