Wall clock time and date at job start Mon Mar 30 2020 02:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 114.00045 * 2 1 4 4 C 1.53000 * 109.47498 * 179.97438 * 3 2 1 5 5 O 1.42898 * 109.47350 * 64.99294 * 4 3 2 6 6 C 1.42896 * 114.00068 * 180.02562 * 5 4 3 7 7 H 1.09002 * 109.46984 * 30.00461 * 6 5 4 8 8 C 1.53000 * 109.47231 * 270.00142 * 6 5 4 9 9 C 1.50703 * 109.47055 * 150.00373 * 6 5 4 10 10 N 1.30270 * 126.28162 * 45.02743 * 9 6 5 11 11 N 1.28664 * 109.38523 * 179.97438 * 10 9 6 12 12 C 1.30276 * 109.37728 * 359.97438 * 11 10 9 13 13 C 1.50699 * 126.28298 * 180.02562 * 12 11 10 14 14 C 1.53002 * 109.47094 * 89.97769 * 13 12 11 15 15 C 1.50699 * 109.47094 * 180.02562 * 14 13 12 16 16 H 1.08003 * 120.00105 * 359.97438 * 15 14 13 17 17 C 1.37874 * 120.00193 * 180.02562 * 15 14 13 18 18 N 1.31507 * 120.00295 * 180.02562 * 17 15 14 19 19 Si 1.86807 * 119.99664 * 359.97438 * 17 15 14 20 20 H 1.48499 * 109.46973 * 90.00384 * 19 17 15 21 21 H 1.48496 * 109.47055 * 209.99974 * 19 17 15 22 22 H 1.48498 * 109.47229 * 330.00547 * 19 17 15 23 23 O 1.34355 * 126.28091 * 224.71582 * 9 6 5 24 24 H 1.08991 * 109.47358 * 300.00176 * 1 2 3 25 25 H 1.09007 * 109.46554 * 60.00618 * 1 2 3 26 26 H 1.08998 * 109.47099 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47298 * 59.99491 * 3 2 1 28 28 H 1.09000 * 109.47317 * 299.99490 * 3 2 1 29 29 H 1.09002 * 109.46621 * 304.99530 * 4 3 2 30 30 H 1.08994 * 109.47258 * 185.00270 * 4 3 2 31 31 H 1.08992 * 109.47399 * 300.00058 * 8 6 5 32 32 H 1.09004 * 109.46724 * 60.00544 * 8 6 5 33 33 H 1.09001 * 109.47194 * 179.97438 * 8 6 5 34 34 H 1.09006 * 109.47384 * 209.98168 * 13 12 11 35 35 H 1.09004 * 109.47320 * 329.97635 * 13 12 11 36 36 H 1.08992 * 109.46822 * 300.00144 * 14 13 12 37 37 H 1.09000 * 109.46469 * 60.00358 * 14 13 12 38 38 H 0.97006 * 120.00151 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 8 3.9659 0.5792 -1.2200 6 6 5.3822 0.4187 -1.3214 7 1 5.8045 0.2820 -0.3258 8 6 5.9917 1.6646 -1.9673 9 6 5.6916 -0.7887 -2.1685 10 7 5.1284 -1.1006 -3.3010 11 7 5.6385 -2.1955 -3.7443 12 6 6.5448 -2.6191 -2.9098 13 6 7.3788 -3.8657 -3.0562 14 6 8.6655 -3.5324 -3.8141 15 6 9.4992 -4.7792 -3.9610 16 1 9.1468 -5.7155 -3.5541 17 6 10.7123 -4.7243 -4.6139 18 7 11.4396 -5.8124 -4.7426 19 14 11.3221 -3.1046 -5.3170 20 1 12.1233 -2.3900 -4.2910 21 1 12.1673 -3.3693 -6.5090 22 1 10.1606 -2.2669 -5.7098 23 8 6.6030 -1.7379 -1.8971 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0276 -0.0005 27 1 1.6886 1.8464 0.8899 28 1 1.6887 1.8464 -0.8900 29 1 3.8507 0.5687 0.8428 30 1 3.9784 2.1766 0.0903 31 1 5.5695 1.8013 -2.9627 32 1 5.7680 2.5378 -1.3545 33 1 7.0721 1.5423 -2.0442 34 1 7.6288 -4.2537 -2.0687 35 1 6.8153 -4.6170 -3.6097 36 1 8.4154 -3.1446 -4.8015 37 1 9.2289 -2.7813 -3.2605 38 1 12.2933 -5.7737 -5.2016 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118376560.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:39 Heat of formation + Delta-G solvation = -60.271316 kcal Electronic energy + Delta-G solvation = -20234.986605 eV Core-core repulsion = 16887.098881 eV Total energy + Delta-G solvation = -3347.887724 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.87865 -39.03073 -37.72666 -35.80801 -34.56482 -33.01593 -31.88128 -30.11053 -29.25453 -26.62717 -26.12182 -24.55740 -23.03801 -22.42858 -21.64162 -20.63955 -17.60334 -17.32050 -17.01055 -16.86872 -16.73629 -15.95935 -15.74435 -15.18850 -14.80398 -14.38352 -13.90907 -13.53972 -13.27885 -13.19190 -12.74782 -12.71509 -12.46914 -12.06230 -12.02774 -11.73702 -11.57037 -11.46621 -11.39794 -11.12931 -10.71934 -10.42912 -10.22745 -10.13531 -10.00497 -9.87605 -9.36800 -9.06240 -8.62900 -6.13350 -4.13914 1.42983 2.23734 2.74636 3.26379 3.34736 3.39465 3.41682 3.50007 4.02578 4.38297 4.43836 4.64066 4.67008 4.81051 4.86418 4.91107 4.98248 5.05797 5.10656 5.20412 5.27677 5.31749 5.38611 5.40211 5.53768 5.74621 5.82602 5.91215 6.05042 6.08947 6.45749 6.70879 6.85170 7.01803 7.16718 7.61625 8.38736 8.67659 8.88596 9.47261 10.99245 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.035563 B = 0.003348 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.150023 B = 8360.776704 C = 8824.694086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.383 6.383 3 C 0.063 3.937 4 C 0.060 3.940 5 O -0.355 6.355 6 C 0.195 3.805 7 H 0.091 0.909 8 C -0.169 4.169 9 C 0.130 3.870 10 N -0.256 5.256 11 N -0.303 5.303 12 C 0.197 3.803 13 C -0.016 4.016 14 C -0.008 4.008 15 C -0.526 4.526 16 H 0.078 0.922 17 C 0.073 3.927 18 N -0.897 5.897 19 Si 0.876 3.124 20 H -0.276 1.276 21 H -0.285 1.285 22 H -0.265 1.265 23 O -0.224 6.224 24 H 0.039 0.961 25 H 0.042 0.958 26 H 0.086 0.914 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.092 0.908 35 H 0.109 0.891 36 H 0.028 0.972 37 H 0.017 0.983 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.736 17.445 12.356 27.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C -0.013 4.013 4 C -0.016 4.016 5 O -0.273 6.273 6 C 0.135 3.865 7 H 0.109 0.891 8 C -0.227 4.227 9 C -0.082 4.082 10 N -0.104 5.104 11 N -0.149 5.149 12 C -0.013 4.013 13 C -0.055 4.055 14 C -0.046 4.046 15 C -0.563 4.563 16 H 0.096 0.904 17 C -0.130 4.130 18 N -0.535 5.535 19 Si 0.703 3.297 20 H -0.202 1.202 21 H -0.211 1.211 22 H -0.189 1.189 23 O -0.103 6.103 24 H 0.058 0.942 25 H 0.061 0.939 26 H 0.105 0.895 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.097 0.903 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.111 0.889 35 H 0.127 0.873 36 H 0.046 0.954 37 H 0.035 0.965 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -17.368 17.203 11.100 26.848 hybrid contribution 1.138 1.017 0.804 1.725 sum -16.230 18.221 11.905 27.150 Atomic orbital electron populations 1.22750 0.80944 1.03011 0.99795 1.87996 1.19710 1.27070 1.95354 1.22541 0.91962 0.85778 1.01050 1.22695 0.93851 0.97847 0.87212 1.88109 1.19371 1.81810 1.38001 1.19844 0.83415 0.86957 0.96256 0.89134 1.22281 1.01685 0.95723 1.03003 1.27238 0.90537 0.94038 0.96412 1.74297 1.20844 1.07634 1.07633 1.74485 1.09850 1.05902 1.24660 1.29012 0.96194 0.94168 0.81883 1.20537 0.95182 0.85957 1.03806 1.19631 0.90874 0.98578 0.95532 1.20931 1.03171 0.94697 1.37531 0.90368 1.24946 0.96408 0.96329 0.95295 1.69888 1.13092 1.27762 1.42738 0.86823 0.79249 0.84473 0.79110 1.20169 1.21052 1.18947 1.84769 1.50226 1.30028 1.45293 0.94228 0.93913 0.89512 0.91608 0.92089 0.91931 0.91123 0.90323 0.90652 0.90667 0.88934 0.87286 0.95416 0.96516 0.92473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.35 16 2 O -0.38 -4.28 10.67 -40.08 -0.43 -4.70 16 3 C 0.06 0.51 6.32 37.16 0.23 0.74 16 4 C 0.06 0.50 6.13 37.16 0.23 0.73 16 5 O -0.35 -4.45 9.94 -40.08 -0.40 -4.85 16 6 C 0.20 2.34 3.27 -27.88 -0.09 2.25 16 7 H 0.09 0.85 7.79 -51.93 -0.40 0.44 16 8 C -0.17 -1.63 9.51 37.16 0.35 -1.28 16 9 C 0.13 2.21 7.36 -12.94 -0.10 2.12 16 10 N -0.26 -5.10 12.22 32.55 0.40 -4.70 16 11 N -0.30 -6.41 12.22 32.55 0.40 -6.01 16 12 C 0.20 3.91 7.73 -12.94 -0.10 3.81 16 13 C -0.02 -0.32 5.78 -27.88 -0.16 -0.48 16 14 C -0.01 -0.19 4.02 -27.88 -0.11 -0.30 16 15 C -0.53 -14.50 9.66 -34.44 -0.33 -14.83 16 16 H 0.08 2.26 7.99 -52.48 -0.42 1.85 16 17 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 18 N -0.90 -27.07 13.96 55.43 0.77 -26.30 16 19 Si 0.88 21.54 27.47 -169.99 -4.67 16.87 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.26 -6.40 6.54 56.52 0.37 -6.03 16 23 O -0.22 -4.09 10.87 5.39 0.06 -4.03 16 24 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 25 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.49 8.08 -51.93 -0.42 0.07 16 30 H 0.07 0.37 7.87 -51.93 -0.41 -0.04 16 31 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.07 0.49 7.87 -51.93 -0.41 0.09 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.09 1.67 8.14 -51.93 -0.42 1.24 16 35 H 0.11 2.06 8.14 -51.93 -0.42 1.64 16 36 H 0.03 0.68 7.20 -51.93 -0.37 0.30 16 37 H 0.02 0.39 7.57 -51.93 -0.39 0.00 16 38 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 330.33 15.07 4.98 4.98 Total: -1.00 -34.37 330.33 -3.75 -38.12 By element: Atomic # 1 Polarization: 0.34 SS G_CDS: -5.80 Total: -5.46 kcal Atomic # 6 Polarization: -4.85 SS G_CDS: 0.94 Total: -3.92 kcal Atomic # 7 Polarization: -38.57 SS G_CDS: 1.57 Total: -37.00 kcal Atomic # 8 Polarization: -12.82 SS G_CDS: -0.77 Total: -13.59 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.67 Total: 16.87 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -34.37 -3.75 -38.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118376560.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.155 kcal (2) G-P(sol) polarization free energy of solvation -34.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds