Wall clock time and date at job start Mon Mar 30 2020 02:18:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42898 * 1
3 3 C 1.42900 * 114.00045 * 2 1
4 4 C 1.53000 * 109.47498 * 179.97438 * 3 2 1
5 5 O 1.42898 * 109.47350 * 64.99294 * 4 3 2
6 6 C 1.42896 * 114.00068 * 180.02562 * 5 4 3
7 7 H 1.09002 * 109.46984 * 30.00461 * 6 5 4
8 8 C 1.53000 * 109.47231 * 270.00142 * 6 5 4
9 9 C 1.50703 * 109.47055 * 150.00373 * 6 5 4
10 10 N 1.30270 * 126.28162 * 45.02743 * 9 6 5
11 11 N 1.28664 * 109.38523 * 179.97438 * 10 9 6
12 12 C 1.30276 * 109.37728 * 359.97438 * 11 10 9
13 13 C 1.50699 * 126.28298 * 180.02562 * 12 11 10
14 14 C 1.53002 * 109.47094 * 89.97769 * 13 12 11
15 15 C 1.50699 * 109.47094 * 180.02562 * 14 13 12
16 16 H 1.08003 * 120.00105 * 359.97438 * 15 14 13
17 17 C 1.37874 * 120.00193 * 180.02562 * 15 14 13
18 18 N 1.31507 * 120.00295 * 180.02562 * 17 15 14
19 19 Si 1.86807 * 119.99664 * 359.97438 * 17 15 14
20 20 H 1.48499 * 109.46973 * 90.00384 * 19 17 15
21 21 H 1.48496 * 109.47055 * 209.99974 * 19 17 15
22 22 H 1.48498 * 109.47229 * 330.00547 * 19 17 15
23 23 O 1.34355 * 126.28091 * 224.71582 * 9 6 5
24 24 H 1.08991 * 109.47358 * 300.00176 * 1 2 3
25 25 H 1.09007 * 109.46554 * 60.00618 * 1 2 3
26 26 H 1.08998 * 109.47099 * 179.97438 * 1 2 3
27 27 H 1.08996 * 109.47298 * 59.99491 * 3 2 1
28 28 H 1.09000 * 109.47317 * 299.99490 * 3 2 1
29 29 H 1.09002 * 109.46621 * 304.99530 * 4 3 2
30 30 H 1.08994 * 109.47258 * 185.00270 * 4 3 2
31 31 H 1.08992 * 109.47399 * 300.00058 * 8 6 5
32 32 H 1.09004 * 109.46724 * 60.00544 * 8 6 5
33 33 H 1.09001 * 109.47194 * 179.97438 * 8 6 5
34 34 H 1.09006 * 109.47384 * 209.98168 * 13 12 11
35 35 H 1.09004 * 109.47320 * 329.97635 * 13 12 11
36 36 H 1.08992 * 109.46822 * 300.00144 * 14 13 12
37 37 H 1.09000 * 109.46469 * 60.00358 * 14 13 12
38 38 H 0.97006 * 120.00151 * 180.02562 * 18 17 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3054 0.0000
4 6 3.5355 1.1847 0.0006
5 8 3.9659 0.5792 -1.2200
6 6 5.3822 0.4187 -1.3214
7 1 5.8045 0.2820 -0.3258
8 6 5.9917 1.6646 -1.9673
9 6 5.6916 -0.7887 -2.1685
10 7 5.1284 -1.1006 -3.3010
11 7 5.6385 -2.1955 -3.7443
12 6 6.5448 -2.6191 -2.9098
13 6 7.3788 -3.8657 -3.0562
14 6 8.6655 -3.5324 -3.8141
15 6 9.4992 -4.7792 -3.9610
16 1 9.1468 -5.7155 -3.5541
17 6 10.7123 -4.7243 -4.6139
18 7 11.4396 -5.8124 -4.7426
19 14 11.3221 -3.1046 -5.3170
20 1 12.1233 -2.3900 -4.2910
21 1 12.1673 -3.3693 -6.5090
22 1 10.1606 -2.2669 -5.7098
23 8 6.6030 -1.7379 -1.8971
24 1 -0.3633 0.5138 0.8899
25 1 -0.3633 0.5138 -0.8901
26 1 -0.3633 -1.0276 -0.0005
27 1 1.6886 1.8464 0.8899
28 1 1.6887 1.8464 -0.8900
29 1 3.8507 0.5687 0.8428
30 1 3.9784 2.1766 0.0903
31 1 5.5695 1.8013 -2.9627
32 1 5.7680 2.5378 -1.3545
33 1 7.0721 1.5423 -2.0442
34 1 7.6288 -4.2537 -2.0687
35 1 6.8153 -4.6170 -3.6097
36 1 8.4154 -3.1446 -4.8015
37 1 9.2289 -2.7813 -3.2605
38 1 12.2933 -5.7737 -5.2016
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001118376560.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:18:39
Heat of formation + Delta-G solvation = -60.271316 kcal
Electronic energy + Delta-G solvation = -20234.986605 eV
Core-core repulsion = 16887.098881 eV
Total energy + Delta-G solvation = -3347.887724 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 270.141 amu
Computer time = 0.47 seconds
Orbital eigenvalues (eV)
-43.87865 -39.03073 -37.72666 -35.80801 -34.56482 -33.01593 -31.88128 -30.11053
-29.25453 -26.62717 -26.12182 -24.55740 -23.03801 -22.42858 -21.64162 -20.63955
-17.60334 -17.32050 -17.01055 -16.86872 -16.73629 -15.95935 -15.74435 -15.18850
-14.80398 -14.38352 -13.90907 -13.53972 -13.27885 -13.19190 -12.74782 -12.71509
-12.46914 -12.06230 -12.02774 -11.73702 -11.57037 -11.46621 -11.39794 -11.12931
-10.71934 -10.42912 -10.22745 -10.13531 -10.00497 -9.87605 -9.36800 -9.06240
-8.62900 -6.13350 -4.13914 1.42983 2.23734 2.74636 3.26379 3.34736
3.39465 3.41682 3.50007 4.02578 4.38297 4.43836 4.64066 4.67008
4.81051 4.86418 4.91107 4.98248 5.05797 5.10656 5.20412 5.27677
5.31749 5.38611 5.40211 5.53768 5.74621 5.82602 5.91215 6.05042
6.08947 6.45749 6.70879 6.85170 7.01803 7.16718 7.61625 8.38736
8.67659 8.88596 9.47261 10.99245
Molecular weight = 270.14amu
Principal moments of inertia in cm(-1)
A = 0.035563 B = 0.003348 C = 0.003172
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 787.150023 B = 8360.776704 C = 8824.694086
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.032 3.968
2 O -0.383 6.383
3 C 0.063 3.937
4 C 0.060 3.940
5 O -0.355 6.355
6 C 0.195 3.805
7 H 0.091 0.909
8 C -0.169 4.169
9 C 0.130 3.870
10 N -0.256 5.256
11 N -0.303 5.303
12 C 0.197 3.803
13 C -0.016 4.016
14 C -0.008 4.008
15 C -0.526 4.526
16 H 0.078 0.922
17 C 0.073 3.927
18 N -0.897 5.897
19 Si 0.876 3.124
20 H -0.276 1.276
21 H -0.285 1.285
22 H -0.265 1.265
23 O -0.224 6.224
24 H 0.039 0.961
25 H 0.042 0.958
26 H 0.086 0.914
27 H 0.066 0.934
28 H 0.061 0.939
29 H 0.062 0.938
30 H 0.071 0.929
31 H 0.078 0.922
32 H 0.075 0.925
33 H 0.074 0.926
34 H 0.092 0.908
35 H 0.109 0.891
36 H 0.028 0.972
37 H 0.017 0.983
38 H 0.265 0.735
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.736 17.445 12.356 27.149
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.065 4.065
2 O -0.301 6.301
3 C -0.013 4.013
4 C -0.016 4.016
5 O -0.273 6.273
6 C 0.135 3.865
7 H 0.109 0.891
8 C -0.227 4.227
9 C -0.082 4.082
10 N -0.104 5.104
11 N -0.149 5.149
12 C -0.013 4.013
13 C -0.055 4.055
14 C -0.046 4.046
15 C -0.563 4.563
16 H 0.096 0.904
17 C -0.130 4.130
18 N -0.535 5.535
19 Si 0.703 3.297
20 H -0.202 1.202
21 H -0.211 1.211
22 H -0.189 1.189
23 O -0.103 6.103
24 H 0.058 0.942
25 H 0.061 0.939
26 H 0.105 0.895
27 H 0.084 0.916
28 H 0.079 0.921
29 H 0.081 0.919
30 H 0.089 0.911
31 H 0.097 0.903
32 H 0.093 0.907
33 H 0.093 0.907
34 H 0.111 0.889
35 H 0.127 0.873
36 H 0.046 0.954
37 H 0.035 0.965
38 H 0.075 0.925
Dipole moment (debyes) X Y Z Total
from point charges -17.368 17.203 11.100 26.848
hybrid contribution 1.138 1.017 0.804 1.725
sum -16.230 18.221 11.905 27.150
Atomic orbital electron populations
1.22750 0.80944 1.03011 0.99795 1.87996 1.19710 1.27070 1.95354
1.22541 0.91962 0.85778 1.01050 1.22695 0.93851 0.97847 0.87212
1.88109 1.19371 1.81810 1.38001 1.19844 0.83415 0.86957 0.96256
0.89134 1.22281 1.01685 0.95723 1.03003 1.27238 0.90537 0.94038
0.96412 1.74297 1.20844 1.07634 1.07633 1.74485 1.09850 1.05902
1.24660 1.29012 0.96194 0.94168 0.81883 1.20537 0.95182 0.85957
1.03806 1.19631 0.90874 0.98578 0.95532 1.20931 1.03171 0.94697
1.37531 0.90368 1.24946 0.96408 0.96329 0.95295 1.69888 1.13092
1.27762 1.42738 0.86823 0.79249 0.84473 0.79110 1.20169 1.21052
1.18947 1.84769 1.50226 1.30028 1.45293 0.94228 0.93913 0.89512
0.91608 0.92089 0.91931 0.91123 0.90323 0.90652 0.90667 0.88934
0.87286 0.95416 0.96516 0.92473
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.24 11.01 101.05 1.11 1.35 16
2 O -0.38 -4.28 10.67 -40.08 -0.43 -4.70 16
3 C 0.06 0.51 6.32 37.16 0.23 0.74 16
4 C 0.06 0.50 6.13 37.16 0.23 0.73 16
5 O -0.35 -4.45 9.94 -40.08 -0.40 -4.85 16
6 C 0.20 2.34 3.27 -27.88 -0.09 2.25 16
7 H 0.09 0.85 7.79 -51.93 -0.40 0.44 16
8 C -0.17 -1.63 9.51 37.16 0.35 -1.28 16
9 C 0.13 2.21 7.36 -12.94 -0.10 2.12 16
10 N -0.26 -5.10 12.22 32.55 0.40 -4.70 16
11 N -0.30 -6.41 12.22 32.55 0.40 -6.01 16
12 C 0.20 3.91 7.73 -12.94 -0.10 3.81 16
13 C -0.02 -0.32 5.78 -27.88 -0.16 -0.48 16
14 C -0.01 -0.19 4.02 -27.88 -0.11 -0.30 16
15 C -0.53 -14.50 9.66 -34.44 -0.33 -14.83 16
16 H 0.08 2.26 7.99 -52.48 -0.42 1.85 16
17 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16
18 N -0.90 -27.07 13.96 55.43 0.77 -26.30 16
19 Si 0.88 21.54 27.47 -169.99 -4.67 16.87 16
20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16
21 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16
22 H -0.26 -6.40 6.54 56.52 0.37 -6.03 16
23 O -0.22 -4.09 10.87 5.39 0.06 -4.03 16
24 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16
25 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16
26 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16
27 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16
28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16
29 H 0.06 0.49 8.08 -51.93 -0.42 0.07 16
30 H 0.07 0.37 7.87 -51.93 -0.41 -0.04 16
31 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16
32 H 0.07 0.49 7.87 -51.93 -0.41 0.09 16
33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16
34 H 0.09 1.67 8.14 -51.93 -0.42 1.24 16
35 H 0.11 2.06 8.14 -51.93 -0.42 1.64 16
36 H 0.03 0.68 7.20 -51.93 -0.37 0.30 16
37 H 0.02 0.39 7.57 -51.93 -0.39 0.00 16
38 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16
LS Contribution 330.33 15.07 4.98 4.98
Total: -1.00 -34.37 330.33 -3.75 -38.12
By element:
Atomic # 1 Polarization: 0.34 SS G_CDS: -5.80 Total: -5.46 kcal
Atomic # 6 Polarization: -4.85 SS G_CDS: 0.94 Total: -3.92 kcal
Atomic # 7 Polarization: -38.57 SS G_CDS: 1.57 Total: -37.00 kcal
Atomic # 8 Polarization: -12.82 SS G_CDS: -0.77 Total: -13.59 kcal
Atomic # 14 Polarization: 21.54 SS G_CDS: -4.67 Total: 16.87 kcal
Total LS contribution 4.98 Total: 4.98 kcal
Total: -34.37 -3.75 -38.12 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001118376560.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -22.155 kcal
(2) G-P(sol) polarization free energy of solvation -34.367 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.521 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.750 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.117 kcal
(6) G-S(sol) free energy of system = (1) + (5) -60.271 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.47 seconds