Wall clock time and date at job start Mon Mar 30 2020 02:18:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 114.00045 * 2 1 4 4 C 1.53000 * 109.47498 * 179.97438 * 3 2 1 5 5 O 1.42898 * 109.47350 * 64.99294 * 4 3 2 6 6 C 1.42896 * 114.00068 * 180.02562 * 5 4 3 7 7 H 1.09002 * 109.46984 * 30.00461 * 6 5 4 8 8 C 1.53000 * 109.47231 * 270.00142 * 6 5 4 9 9 C 1.50703 * 109.47055 * 150.00373 * 6 5 4 10 10 N 1.30270 * 126.28162 * 45.02743 * 9 6 5 11 11 N 1.28664 * 109.38523 * 179.97438 * 10 9 6 12 12 C 1.30276 * 109.37728 * 359.97438 * 11 10 9 13 13 C 1.50699 * 126.28298 * 180.02562 * 12 11 10 14 14 C 1.53002 * 109.47094 * 89.97769 * 13 12 11 15 15 C 1.50699 * 109.47094 * 180.02562 * 14 13 12 16 16 H 1.08003 * 120.00105 * 359.97438 * 15 14 13 17 17 C 1.37874 * 120.00193 * 180.02562 * 15 14 13 18 18 N 1.31507 * 120.00295 * 180.02562 * 17 15 14 19 19 Si 1.86807 * 119.99664 * 359.97438 * 17 15 14 20 20 H 1.48499 * 109.46973 * 90.00384 * 19 17 15 21 21 H 1.48496 * 109.47055 * 209.99974 * 19 17 15 22 22 H 1.48498 * 109.47229 * 330.00547 * 19 17 15 23 23 O 1.34355 * 126.28091 * 224.71582 * 9 6 5 24 24 H 1.08991 * 109.47358 * 300.00176 * 1 2 3 25 25 H 1.09007 * 109.46554 * 60.00618 * 1 2 3 26 26 H 1.08998 * 109.47099 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47298 * 59.99491 * 3 2 1 28 28 H 1.09000 * 109.47317 * 299.99490 * 3 2 1 29 29 H 1.09002 * 109.46621 * 304.99530 * 4 3 2 30 30 H 1.08994 * 109.47258 * 185.00270 * 4 3 2 31 31 H 1.08992 * 109.47399 * 300.00058 * 8 6 5 32 32 H 1.09004 * 109.46724 * 60.00544 * 8 6 5 33 33 H 1.09001 * 109.47194 * 179.97438 * 8 6 5 34 34 H 1.09006 * 109.47384 * 209.98168 * 13 12 11 35 35 H 1.09004 * 109.47320 * 329.97635 * 13 12 11 36 36 H 1.08992 * 109.46822 * 300.00144 * 14 13 12 37 37 H 1.09000 * 109.46469 * 60.00358 * 14 13 12 38 38 H 0.97006 * 120.00151 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 8 3.9659 0.5792 -1.2200 6 6 5.3822 0.4187 -1.3214 7 1 5.8045 0.2820 -0.3258 8 6 5.9917 1.6646 -1.9673 9 6 5.6916 -0.7887 -2.1685 10 7 5.1284 -1.1006 -3.3010 11 7 5.6385 -2.1955 -3.7443 12 6 6.5448 -2.6191 -2.9098 13 6 7.3788 -3.8657 -3.0562 14 6 8.6655 -3.5324 -3.8141 15 6 9.4992 -4.7792 -3.9610 16 1 9.1468 -5.7155 -3.5541 17 6 10.7123 -4.7243 -4.6139 18 7 11.4396 -5.8124 -4.7426 19 14 11.3221 -3.1046 -5.3170 20 1 12.1233 -2.3900 -4.2910 21 1 12.1673 -3.3693 -6.5090 22 1 10.1606 -2.2669 -5.7098 23 8 6.6030 -1.7379 -1.8971 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0276 -0.0005 27 1 1.6886 1.8464 0.8899 28 1 1.6887 1.8464 -0.8900 29 1 3.8507 0.5687 0.8428 30 1 3.9784 2.1766 0.0903 31 1 5.5695 1.8013 -2.9627 32 1 5.7680 2.5378 -1.3545 33 1 7.0721 1.5423 -2.0442 34 1 7.6288 -4.2537 -2.0687 35 1 6.8153 -4.6170 -3.6097 36 1 8.4154 -3.1446 -4.8015 37 1 9.2289 -2.7813 -3.2605 38 1 12.2933 -5.7737 -5.2016 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118376560.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:38 Heat of formation + Delta-G solvation = -88.760086 kcal Electronic energy + Delta-G solvation = -20236.221971 eV Core-core repulsion = 16887.098881 eV Total energy + Delta-G solvation = -3349.123090 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -45.33239 -39.79692 -38.45111 -37.27958 -36.34243 -34.44973 -33.43057 -31.04195 -30.49684 -27.90855 -27.18430 -25.74299 -24.28166 -23.54824 -22.76421 -22.40660 -19.22214 -18.54447 -18.27720 -18.13315 -17.54951 -17.06879 -16.48516 -16.37352 -15.92133 -15.64197 -15.59293 -15.13265 -14.75135 -14.09918 -13.90364 -13.64126 -13.49552 -13.32443 -13.14461 -13.03931 -12.94481 -12.71787 -12.53930 -12.29855 -12.07101 -12.02266 -11.90942 -11.74625 -11.49256 -10.90913 -10.80151 -10.64597 -10.53685 -8.32311 -6.37546 0.02963 0.96843 1.27296 1.33066 1.36746 1.47081 2.32871 2.54665 2.80973 2.87795 3.02682 3.40475 3.63473 3.83579 4.08212 4.11946 4.23739 4.25164 4.34187 4.38221 4.41099 4.43994 4.48770 4.54653 4.56146 4.66915 4.77310 4.80166 4.81198 4.85101 5.15994 5.16341 5.29595 5.53444 5.98859 6.19717 6.26178 6.69185 7.21239 7.27124 8.83378 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.035563 B = 0.003348 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.150023 B = 8360.776704 C = 8824.694086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.422 6.422 3 C 0.056 3.944 4 C 0.052 3.948 5 O -0.384 6.384 6 C 0.191 3.809 7 H 0.122 0.878 8 C -0.163 4.163 9 C 0.148 3.852 10 N -0.294 5.294 11 N -0.326 5.326 12 C 0.189 3.811 13 C -0.006 4.006 14 C -0.002 4.002 15 C -0.531 4.531 16 H 0.051 0.949 17 C 0.015 3.985 18 N -0.941 5.941 19 Si 0.940 3.060 20 H -0.262 1.262 21 H -0.281 1.281 22 H -0.259 1.259 23 O -0.223 6.223 24 H 0.061 0.939 25 H 0.045 0.955 26 H 0.084 0.916 27 H 0.098 0.902 28 H 0.059 0.941 29 H 0.066 0.934 30 H 0.108 0.892 31 H 0.058 0.942 32 H 0.114 0.886 33 H 0.076 0.924 34 H 0.109 0.891 35 H 0.112 0.888 36 H 0.019 0.981 37 H 0.024 0.976 38 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.068 20.294 13.821 29.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.342 6.342 3 C -0.020 4.020 4 C -0.023 4.023 5 O -0.303 6.303 6 C 0.132 3.868 7 H 0.140 0.860 8 C -0.221 4.221 9 C -0.064 4.064 10 N -0.140 5.140 11 N -0.172 5.172 12 C -0.022 4.022 13 C -0.045 4.045 14 C -0.040 4.040 15 C -0.569 4.569 16 H 0.069 0.931 17 C -0.183 4.183 18 N -0.581 5.581 19 Si 0.764 3.236 20 H -0.187 1.187 21 H -0.206 1.206 22 H -0.183 1.183 23 O -0.103 6.103 24 H 0.079 0.921 25 H 0.064 0.936 26 H 0.103 0.897 27 H 0.115 0.885 28 H 0.077 0.923 29 H 0.085 0.915 30 H 0.126 0.874 31 H 0.077 0.923 32 H 0.132 0.868 33 H 0.095 0.905 34 H 0.128 0.872 35 H 0.130 0.870 36 H 0.037 0.963 37 H 0.042 0.958 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -17.730 20.070 12.571 29.583 hybrid contribution 1.130 0.144 0.442 1.222 sum -16.600 20.214 13.013 29.215 Atomic orbital electron populations 1.22876 0.79686 1.03381 1.00978 1.87937 1.21388 1.29191 1.95636 1.22789 0.91876 0.84872 1.02427 1.23054 0.94098 0.99542 0.85628 1.88078 1.19415 1.82546 1.40296 1.20329 0.83974 0.85483 0.97042 0.86002 1.22291 1.01370 0.95887 1.02552 1.28483 0.88280 0.93916 0.95751 1.74247 1.22367 1.07934 1.09456 1.74416 1.10473 1.06759 1.25566 1.28765 0.96482 0.94493 0.82449 1.20313 0.93589 0.86261 1.04289 1.19475 0.92122 0.96685 0.95749 1.21224 1.03631 0.95310 1.36686 0.93054 1.25821 0.96796 0.99858 0.95872 1.70018 1.13830 1.30119 1.44175 0.85804 0.78914 0.80159 0.78698 1.18679 1.20640 1.18279 1.84777 1.50649 1.30091 1.44782 0.92079 0.93636 0.89697 0.88469 0.92321 0.91532 0.87413 0.92256 0.86775 0.90480 0.87241 0.86964 0.96286 0.95813 0.92228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 113.37 1.25 1.63 16 2 O -0.42 -8.96 10.67 -144.34 -1.54 -10.50 16 3 C 0.06 0.78 6.32 71.98 0.45 1.23 16 4 C 0.05 0.70 6.13 71.98 0.44 1.14 16 5 O -0.38 -8.83 9.94 -144.34 -1.43 -10.26 16 6 C 0.19 4.08 3.27 29.85 0.10 4.17 16 7 H 0.12 1.81 7.79 -2.39 -0.02 1.79 16 8 C -0.16 -2.65 9.51 71.98 0.68 -1.96 16 9 C 0.15 4.85 7.36 88.34 0.65 5.50 16 10 N -0.29 -11.60 12.22 -165.51 -2.02 -13.62 16 11 N -0.33 -13.79 12.22 -165.49 -2.02 -15.81 16 12 C 0.19 7.37 7.73 88.34 0.68 8.05 16 13 C -0.01 -0.24 5.78 29.85 0.17 -0.06 16 14 C 0.00 -0.09 4.02 29.85 0.12 0.03 16 15 C -0.53 -29.53 9.66 25.60 0.25 -29.29 16 16 H 0.05 3.05 7.99 -2.91 -0.02 3.03 16 17 C 0.01 0.84 5.47 84.66 0.46 1.31 16 18 N -0.94 -57.65 13.96 21.44 0.30 -57.35 16 19 Si 0.94 44.03 27.47 68.60 1.88 45.91 16 20 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 21 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 22 H -0.26 -11.75 6.54 99.48 0.65 -11.10 16 23 O -0.22 -7.85 10.87 -3.63 -0.04 -7.89 16 24 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 25 H 0.04 0.59 8.14 -2.38 -0.02 0.57 16 26 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.07 0.83 8.08 -2.39 -0.02 0.81 16 30 H 0.11 0.62 7.87 -2.39 -0.02 0.60 16 31 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.11 0.97 7.87 -2.39 -0.02 0.95 16 33 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.11 3.85 8.14 -2.38 -0.02 3.83 16 35 H 0.11 4.26 8.14 -2.38 -0.02 4.24 16 36 H 0.02 0.91 7.20 -2.39 -0.02 0.90 16 37 H 0.02 1.07 7.57 -2.39 -0.02 1.05 16 38 H 0.27 15.35 8.31 -92.70 -0.77 14.58 16 Total: -1.00 -75.45 330.33 1.37 -74.08 By element: Atomic # 1 Polarization: 2.72 SS G_CDS: 0.99 Total: 3.70 kcal Atomic # 6 Polarization: -13.52 SS G_CDS: 5.26 Total: -8.25 kcal Atomic # 7 Polarization: -83.04 SS G_CDS: -3.75 Total: -86.78 kcal Atomic # 8 Polarization: -25.64 SS G_CDS: -3.01 Total: -28.65 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 1.88 Total: 45.91 kcal Total: -75.45 1.37 -74.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118376560.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.684 kcal (2) G-P(sol) polarization free energy of solvation -75.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds