Wall clock time and date at job start Mon Mar 30 2020 02:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42904 * 113.99912 * 2 1 4 4 C 1.52999 * 109.47221 * 179.97438 * 3 2 1 5 5 O 1.42905 * 109.46728 * 65.00652 * 4 3 2 6 6 C 1.42899 * 113.99778 * 179.97438 * 5 4 3 7 7 H 1.08999 * 109.46993 * 329.99508 * 6 5 4 8 8 C 1.53003 * 109.47347 * 89.99741 * 6 5 4 9 9 C 1.50704 * 109.46915 * 209.99859 * 6 5 4 10 10 N 1.30279 * 126.27946 * 314.68681 * 9 6 5 11 11 N 1.28665 * 109.37698 * 179.82677 * 10 9 6 12 12 C 1.30283 * 109.38446 * 0.44721 * 11 10 9 13 13 C 1.50693 * 126.28404 * 179.73183 * 12 11 10 14 14 C 1.52993 * 109.47252 * 90.00119 * 13 12 11 15 15 C 1.50700 * 109.47530 * 179.97438 * 14 13 12 16 16 H 1.08007 * 119.99783 * 359.97438 * 15 14 13 17 17 C 1.37871 * 120.00457 * 179.97438 * 15 14 13 18 18 N 1.31515 * 119.99857 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99960 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47113 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47346 * 120.00404 * 19 17 15 22 22 H 1.48509 * 109.47030 * 240.00108 * 19 17 15 23 23 O 1.34360 * 126.27959 * 135.00181 * 9 6 5 24 24 H 1.08999 * 109.47239 * 59.99584 * 1 2 3 25 25 H 1.08999 * 109.46873 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47167 * 299.99421 * 1 2 3 27 27 H 1.09000 * 109.46865 * 60.00255 * 3 2 1 28 28 H 1.08994 * 109.47229 * 300.00235 * 3 2 1 29 29 H 1.09000 * 109.47486 * 305.00590 * 4 3 2 30 30 H 1.09001 * 109.47362 * 184.99867 * 4 3 2 31 31 H 1.09001 * 109.47258 * 179.97438 * 8 6 5 32 32 H 1.08992 * 109.46809 * 300.00308 * 8 6 5 33 33 H 1.09001 * 109.46539 * 59.99795 * 8 6 5 34 34 H 1.09000 * 109.46951 * 209.99746 * 13 12 11 35 35 H 1.08995 * 109.47092 * 329.99814 * 13 12 11 36 36 H 1.09000 * 109.47345 * 299.99550 * 14 13 12 37 37 H 1.08993 * 109.47557 * 59.99348 * 14 13 12 38 38 H 0.97005 * 119.99201 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 8 3.9658 0.5794 -1.2203 6 6 5.3822 0.4200 -1.3222 7 1 5.8782 1.2121 -0.7614 8 6 5.7849 -0.9401 -0.7487 9 6 5.7933 0.4963 -2.7701 10 7 5.2106 -0.1028 -3.7695 11 7 5.8268 0.1898 -4.8605 12 6 6.8292 0.9778 -4.5931 13 6 7.8065 1.5470 -5.5889 14 6 7.2833 2.8877 -6.1079 15 6 8.2609 3.4573 -7.1034 16 1 9.1653 2.9171 -7.3417 17 6 8.0009 4.6678 -7.7098 18 7 6.8999 5.3258 -7.4193 19 14 9.2124 5.3733 -8.9443 20 1 10.3629 4.4464 -9.0939 21 1 8.5392 5.5435 -10.2569 22 1 9.6987 6.6913 -8.4628 23 8 6.8316 1.1899 -3.2662 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 1.6886 1.8464 0.8900 28 1 1.6886 1.8464 -0.8899 29 1 3.8508 0.5685 0.8426 30 1 3.9784 2.1766 0.0902 31 1 6.8653 -1.0619 -0.8268 32 1 5.4875 -0.9953 0.2984 33 1 5.2887 -1.7322 -1.3095 34 1 8.7721 1.6963 -5.1058 35 1 7.9206 0.8542 -6.4226 36 1 6.3177 2.7385 -6.5911 37 1 7.1690 3.5805 -5.2742 38 1 6.7172 6.1777 -7.8458 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118376561.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:42 Heat of formation + Delta-G solvation = -64.327317 kcal Electronic energy + Delta-G solvation = -20169.652993 eV Core-core repulsion = 16821.589388 eV Total energy + Delta-G solvation = -3348.063605 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.77711 -38.93038 -37.63266 -35.70923 -34.45062 -32.97259 -31.74923 -29.98418 -28.97690 -26.52316 -25.81949 -24.48079 -22.96638 -22.54234 -21.54495 -20.78937 -17.38131 -17.15043 -17.00617 -16.91042 -16.33171 -15.79645 -15.60251 -15.06448 -14.77895 -14.54084 -13.93510 -13.39830 -13.26971 -12.90048 -12.69773 -12.38390 -12.31872 -11.94931 -11.90947 -11.60581 -11.49527 -11.35748 -11.23692 -11.03701 -10.75606 -10.51421 -10.13090 -10.06282 -9.93319 -9.90119 -9.30446 -8.91403 -8.46457 -6.10274 -4.15175 1.51893 2.35619 2.83504 3.27123 3.34702 3.38332 3.49490 3.60741 4.12038 4.39270 4.52826 4.72706 4.79313 4.87118 4.97145 5.03723 5.07476 5.14765 5.21283 5.26229 5.34889 5.40845 5.45763 5.51481 5.62996 5.83438 5.93226 6.00357 6.20093 6.22653 6.61706 6.80579 6.93298 7.48007 7.56415 7.85394 8.20576 8.77645 8.90322 9.49774 11.01054 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.026674 B = 0.003250 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.476872 B = 8613.503457 C = 9177.881124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.382 6.382 3 C 0.063 3.937 4 C 0.061 3.939 5 O -0.354 6.354 6 C 0.196 3.804 7 H 0.090 0.910 8 C -0.166 4.166 9 C 0.126 3.874 10 N -0.256 5.256 11 N -0.305 5.305 12 C 0.202 3.798 13 C -0.025 4.025 14 C 0.027 3.973 15 C -0.525 4.525 16 H 0.062 0.938 17 C 0.059 3.941 18 N -0.891 5.891 19 Si 0.898 3.102 20 H -0.271 1.271 21 H -0.283 1.283 22 H -0.283 1.283 23 O -0.224 6.224 24 H 0.043 0.957 25 H 0.086 0.914 26 H 0.039 0.961 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.103 0.897 36 H 0.028 0.972 37 H 0.021 0.979 38 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.299 -8.430 18.551 21.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C -0.014 4.014 4 C -0.015 4.015 5 O -0.273 6.273 6 C 0.136 3.864 7 H 0.107 0.893 8 C -0.224 4.224 9 C -0.086 4.086 10 N -0.103 5.103 11 N -0.152 5.152 12 C -0.007 4.007 13 C -0.064 4.064 14 C -0.011 4.011 15 C -0.563 4.563 16 H 0.080 0.920 17 C -0.143 4.143 18 N -0.529 5.529 19 Si 0.726 3.274 20 H -0.196 1.196 21 H -0.209 1.209 22 H -0.210 1.210 23 O -0.104 6.104 24 H 0.061 0.939 25 H 0.104 0.896 26 H 0.057 0.943 27 H 0.084 0.916 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.097 0.903 34 H 0.105 0.895 35 H 0.121 0.879 36 H 0.046 0.954 37 H 0.040 0.960 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.256 -9.228 17.702 21.241 hybrid contribution 1.219 1.649 0.136 2.055 sum -6.036 -7.580 17.838 20.300 Atomic orbital electron populations 1.22745 0.81033 1.02871 0.99884 1.87961 1.19627 1.27141 1.95383 1.22547 0.91972 0.85687 1.01179 1.22694 0.93853 0.97643 0.87345 1.88124 1.19162 1.81576 1.38393 1.19831 0.83396 0.99418 0.83785 0.89257 1.22244 1.02285 0.96115 1.01731 1.27250 0.87660 0.94654 0.99052 1.74303 1.22234 1.19461 0.94352 1.74482 1.06027 1.15342 1.19307 1.29016 0.97858 0.94150 0.79708 1.20751 0.93233 1.00643 0.91739 1.19172 0.97589 0.87851 0.96509 1.21107 1.06148 1.05032 1.24062 0.91969 1.25025 0.95494 0.96889 0.96907 1.69988 1.24770 1.15162 1.43022 0.86439 0.81066 0.78955 0.80972 1.19555 1.20863 1.20952 1.84769 1.44420 1.57399 1.23814 0.93871 0.89566 0.94288 0.91585 0.92034 0.91832 0.91229 0.90992 0.90638 0.90326 0.89521 0.87917 0.95361 0.96043 0.92793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.37 16 2 O -0.38 -4.36 10.67 -40.08 -0.43 -4.79 16 3 C 0.06 0.59 6.32 37.16 0.23 0.82 16 4 C 0.06 0.58 6.13 37.16 0.23 0.81 16 5 O -0.35 -4.90 9.94 -40.08 -0.40 -5.30 16 6 C 0.20 2.50 3.27 -27.88 -0.09 2.41 16 7 H 0.09 0.90 7.79 -51.93 -0.40 0.49 16 8 C -0.17 -1.70 9.51 37.16 0.35 -1.34 16 9 C 0.13 2.23 7.36 -12.94 -0.10 2.14 16 10 N -0.26 -5.28 12.22 32.55 0.40 -4.89 16 11 N -0.31 -6.70 12.22 32.55 0.40 -6.30 16 12 C 0.20 4.17 7.73 -12.94 -0.10 4.07 16 13 C -0.02 -0.51 5.78 -27.89 -0.16 -0.67 16 14 C 0.03 0.68 4.95 -27.89 -0.14 0.55 16 15 C -0.53 -14.34 9.11 -34.44 -0.31 -14.65 16 16 H 0.06 1.60 7.74 -52.48 -0.41 1.20 16 17 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 18 N -0.89 -26.49 13.29 55.43 0.74 -25.75 16 19 Si 0.90 21.13 29.54 -169.99 -5.02 16.10 16 20 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 O -0.22 -4.27 10.87 5.37 0.06 -4.21 16 24 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 27 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.49 7.87 -51.93 -0.41 0.09 16 30 H 0.07 0.53 8.08 -51.93 -0.42 0.11 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.59 7.87 -51.93 -0.41 0.18 16 33 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 35 H 0.10 1.97 8.14 -51.93 -0.42 1.55 16 36 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 333.93 15.07 5.03 5.03 Total: -1.00 -33.97 333.93 -4.13 -38.10 By element: Atomic # 1 Polarization: 0.78 SS G_CDS: -5.83 Total: -5.05 kcal Atomic # 6 Polarization: -3.87 SS G_CDS: 0.93 Total: -2.94 kcal Atomic # 7 Polarization: -38.47 SS G_CDS: 1.53 Total: -36.94 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: -0.77 Total: -14.30 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.97 -4.13 -38.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118376561.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.229 kcal (2) G-P(sol) polarization free energy of solvation -33.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds