Wall clock time and date at job start Mon Mar 30 2020 02:18:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42904 * 113.99912 * 2 1 4 4 C 1.52999 * 109.47221 * 179.97438 * 3 2 1 5 5 O 1.42905 * 109.46728 * 65.00652 * 4 3 2 6 6 C 1.42899 * 113.99778 * 179.97438 * 5 4 3 7 7 H 1.08999 * 109.46993 * 329.99508 * 6 5 4 8 8 C 1.53003 * 109.47347 * 89.99741 * 6 5 4 9 9 C 1.50704 * 109.46915 * 209.99859 * 6 5 4 10 10 N 1.30279 * 126.27946 * 314.68681 * 9 6 5 11 11 N 1.28665 * 109.37698 * 179.82677 * 10 9 6 12 12 C 1.30283 * 109.38446 * 0.44721 * 11 10 9 13 13 C 1.50693 * 126.28404 * 179.73183 * 12 11 10 14 14 C 1.52993 * 109.47252 * 90.00119 * 13 12 11 15 15 C 1.50700 * 109.47530 * 179.97438 * 14 13 12 16 16 H 1.08007 * 119.99783 * 359.97438 * 15 14 13 17 17 C 1.37871 * 120.00457 * 179.97438 * 15 14 13 18 18 N 1.31515 * 119.99857 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99960 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47113 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47346 * 120.00404 * 19 17 15 22 22 H 1.48509 * 109.47030 * 240.00108 * 19 17 15 23 23 O 1.34360 * 126.27959 * 135.00181 * 9 6 5 24 24 H 1.08999 * 109.47239 * 59.99584 * 1 2 3 25 25 H 1.08999 * 109.46873 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47167 * 299.99421 * 1 2 3 27 27 H 1.09000 * 109.46865 * 60.00255 * 3 2 1 28 28 H 1.08994 * 109.47229 * 300.00235 * 3 2 1 29 29 H 1.09000 * 109.47486 * 305.00590 * 4 3 2 30 30 H 1.09001 * 109.47362 * 184.99867 * 4 3 2 31 31 H 1.09001 * 109.47258 * 179.97438 * 8 6 5 32 32 H 1.08992 * 109.46809 * 300.00308 * 8 6 5 33 33 H 1.09001 * 109.46539 * 59.99795 * 8 6 5 34 34 H 1.09000 * 109.46951 * 209.99746 * 13 12 11 35 35 H 1.08995 * 109.47092 * 329.99814 * 13 12 11 36 36 H 1.09000 * 109.47345 * 299.99550 * 14 13 12 37 37 H 1.08993 * 109.47557 * 59.99348 * 14 13 12 38 38 H 0.97005 * 119.99201 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 8 3.9658 0.5794 -1.2203 6 6 5.3822 0.4200 -1.3222 7 1 5.8782 1.2121 -0.7614 8 6 5.7849 -0.9401 -0.7487 9 6 5.7933 0.4963 -2.7701 10 7 5.2106 -0.1028 -3.7695 11 7 5.8268 0.1898 -4.8605 12 6 6.8292 0.9778 -4.5931 13 6 7.8065 1.5470 -5.5889 14 6 7.2833 2.8877 -6.1079 15 6 8.2609 3.4573 -7.1034 16 1 9.1653 2.9171 -7.3417 17 6 8.0009 4.6678 -7.7098 18 7 6.8999 5.3258 -7.4193 19 14 9.2124 5.3733 -8.9443 20 1 10.3629 4.4464 -9.0939 21 1 8.5392 5.5435 -10.2569 22 1 9.6987 6.6913 -8.4628 23 8 6.8316 1.1899 -3.2662 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 1.6886 1.8464 0.8900 28 1 1.6886 1.8464 -0.8899 29 1 3.8508 0.5685 0.8426 30 1 3.9784 2.1766 0.0902 31 1 6.8653 -1.0619 -0.8268 32 1 5.4875 -0.9953 0.2984 33 1 5.2887 -1.7322 -1.3095 34 1 8.7721 1.6963 -5.1058 35 1 7.9206 0.8542 -6.4226 36 1 6.3177 2.7385 -6.5911 37 1 7.1690 3.5805 -5.2742 38 1 6.7172 6.1777 -7.8458 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118376561.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:41 Heat of formation + Delta-G solvation = -92.038842 kcal Electronic energy + Delta-G solvation = -20170.854655 eV Core-core repulsion = 16821.589388 eV Total energy + Delta-G solvation = -3349.265267 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -45.31182 -39.80039 -38.43644 -37.26371 -36.30753 -34.42466 -33.29205 -30.92194 -30.39749 -27.67670 -27.15938 -25.75499 -24.52233 -23.59558 -22.74854 -22.55503 -18.82813 -18.56741 -18.21902 -18.05913 -17.66766 -17.00618 -16.51590 -16.37164 -15.91816 -15.66667 -15.61444 -15.01841 -14.37572 -14.15756 -13.76828 -13.55002 -13.47025 -13.34235 -13.01857 -12.97150 -12.92802 -12.73657 -12.54425 -12.36679 -12.17372 -12.02056 -11.90624 -11.78299 -11.35848 -10.89000 -10.63810 -10.61372 -10.51203 -8.23559 -6.36489 0.03763 1.01118 1.27198 1.43936 1.44837 1.58215 2.40013 2.58207 2.81423 2.86920 3.11585 3.43620 3.64029 3.85223 4.06447 4.12859 4.21485 4.29805 4.40119 4.41927 4.42682 4.46699 4.54957 4.55505 4.57639 4.64188 4.78688 4.81314 4.86489 4.87375 5.16998 5.37268 5.46703 5.73538 5.98974 6.08549 6.23703 6.79092 7.22949 7.34038 8.89342 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.026674 B = 0.003250 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.476872 B = 8613.503457 C = 9177.881124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.412 6.412 3 C 0.057 3.943 4 C 0.053 3.947 5 O -0.388 6.388 6 C 0.191 3.809 7 H 0.124 0.876 8 C -0.159 4.159 9 C 0.146 3.854 10 N -0.295 5.295 11 N -0.330 5.330 12 C 0.191 3.809 13 C -0.010 4.010 14 C 0.034 3.966 15 C -0.539 4.539 16 H 0.079 0.921 17 C -0.002 4.002 18 N -0.936 5.936 19 Si 0.974 3.026 20 H -0.254 1.254 21 H -0.282 1.282 22 H -0.279 1.279 23 O -0.224 6.224 24 H 0.038 0.962 25 H 0.093 0.907 26 H 0.060 0.940 27 H 0.099 0.901 28 H 0.044 0.956 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.107 0.893 33 H 0.056 0.944 34 H 0.113 0.887 35 H 0.115 0.885 36 H -0.009 1.009 37 H -0.005 1.005 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.901 -8.481 20.055 22.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.331 6.331 3 C -0.019 4.019 4 C -0.022 4.022 5 O -0.307 6.307 6 C 0.131 3.869 7 H 0.141 0.859 8 C -0.216 4.216 9 C -0.067 4.067 10 N -0.141 5.141 11 N -0.176 5.176 12 C -0.019 4.019 13 C -0.049 4.049 14 C -0.004 4.004 15 C -0.577 4.577 16 H 0.097 0.903 17 C -0.200 4.200 18 N -0.576 5.576 19 Si 0.798 3.202 20 H -0.177 1.177 21 H -0.208 1.208 22 H -0.205 1.205 23 O -0.104 6.104 24 H 0.057 0.943 25 H 0.111 0.889 26 H 0.078 0.922 27 H 0.116 0.884 28 H 0.063 0.937 29 H 0.104 0.896 30 H 0.109 0.891 31 H 0.102 0.898 32 H 0.125 0.875 33 H 0.075 0.925 34 H 0.132 0.868 35 H 0.133 0.867 36 H 0.009 0.991 37 H 0.014 0.986 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.866 -9.306 19.218 22.143 hybrid contribution 0.668 1.656 -0.209 1.797 sum -5.199 -7.650 19.009 21.140 Atomic orbital electron populations 1.22895 0.79763 1.03672 1.00691 1.87912 1.21229 1.28416 1.95579 1.22724 0.92086 0.85174 1.01902 1.23023 0.93908 0.98974 0.86341 1.88087 1.19508 1.82291 1.40814 1.20353 0.83663 1.02078 0.80774 0.85881 1.22239 1.02802 0.93645 1.02940 1.28465 0.85755 0.91852 1.00602 1.74247 1.23490 1.21522 0.94846 1.74406 1.06544 1.16129 1.20518 1.28896 0.97895 0.94669 0.80485 1.20518 0.93946 0.97956 0.92436 1.18956 0.95981 0.90214 0.95283 1.21581 1.06781 1.05294 1.24028 0.90264 1.26055 0.97366 0.97468 0.99084 1.70136 1.27037 1.15765 1.44614 0.85267 0.78818 0.78326 0.77832 1.17721 1.20809 1.20467 1.84776 1.44991 1.57499 1.23124 0.94349 0.88893 0.92152 0.88360 0.93719 0.89623 0.89144 0.89809 0.87489 0.92459 0.86843 0.86668 0.99103 0.98627 0.92680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 113.37 1.25 1.64 16 2 O -0.41 -9.02 10.67 -144.35 -1.54 -10.56 16 3 C 0.06 1.00 6.32 71.98 0.45 1.45 16 4 C 0.05 0.89 6.13 71.98 0.44 1.33 16 5 O -0.39 -10.28 9.94 -144.35 -1.43 -11.72 16 6 C 0.19 4.52 3.27 29.85 0.10 4.62 16 7 H 0.12 2.06 7.79 -2.39 -0.02 2.04 16 8 C -0.16 -2.87 9.51 71.98 0.68 -2.19 16 9 C 0.15 5.10 7.36 88.34 0.65 5.75 16 10 N -0.29 -12.39 12.22 -165.50 -2.02 -14.41 16 11 N -0.33 -14.81 12.22 -165.49 -2.02 -16.84 16 12 C 0.19 7.94 7.73 88.34 0.68 8.62 16 13 C -0.01 -0.41 5.78 29.84 0.17 -0.24 16 14 C 0.03 1.77 4.95 29.85 0.15 1.92 16 15 C -0.54 -29.35 9.11 25.60 0.23 -29.12 16 16 H 0.08 3.95 7.74 -2.91 -0.02 3.93 16 17 C 0.00 -0.10 5.46 84.65 0.46 0.36 16 18 N -0.94 -56.76 13.29 21.44 0.28 -56.48 16 19 Si 0.97 43.00 29.54 68.60 2.03 45.03 16 20 H -0.25 -10.41 7.11 99.48 0.71 -9.70 16 21 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 22 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 23 O -0.22 -8.41 10.87 -3.69 -0.04 -8.45 16 24 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 25 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.09 1.05 7.87 -2.39 -0.02 1.03 16 30 H 0.09 1.11 8.08 -2.39 -0.02 1.09 16 31 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.11 1.28 7.87 -2.39 -0.02 1.26 16 33 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.11 3.96 8.14 -2.39 -0.02 3.94 16 35 H 0.12 4.35 8.14 -2.39 -0.02 4.33 16 36 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 37 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 38 H 0.26 15.03 8.31 -92.70 -0.77 14.25 16 Total: -1.00 -75.61 333.93 1.56 -74.04 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: 1.04 Total: 5.23 kcal Atomic # 6 Polarization: -11.12 SS G_CDS: 5.28 Total: -5.85 kcal Atomic # 7 Polarization: -83.96 SS G_CDS: -3.76 Total: -87.72 kcal Atomic # 8 Polarization: -27.71 SS G_CDS: -3.01 Total: -30.73 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Total: -75.61 1.56 -74.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118376561.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.996 kcal (2) G-P(sol) polarization free energy of solvation -75.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds