Wall clock time and date at job start Mon Mar 30 2020 00:52:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 120.00024 * 2 1 4 4 H 1.48497 * 109.46915 * 240.00023 * 3 2 1 5 5 H 1.48497 * 109.47033 * 359.97438 * 3 2 1 6 6 H 1.48491 * 109.47372 * 119.99886 * 3 2 1 7 7 C 1.37878 * 119.99684 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99284 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00271 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47004 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47004 * 179.97438 * 10 9 7 12 12 O 1.21290 * 120.00027 * 359.97438 * 11 10 9 13 13 N 1.34773 * 120.00272 * 180.02562 * 11 10 9 14 14 C 1.47155 * 120.97861 * 359.97438 * 13 11 10 15 15 C 1.53293 * 108.38144 * 129.48883 * 14 13 11 16 16 O 1.42963 * 109.22584 * 52.30295 * 15 14 13 17 17 C 1.42959 * 114.16525 * 297.42247 * 16 15 14 18 18 H 1.09005 * 109.54828 * 302.62688 * 17 16 15 19 19 C 1.52996 * 109.51283 * 182.50389 * 17 16 15 20 20 C 1.50702 * 109.47159 * 65.24742 * 19 17 16 21 21 N 1.34777 * 119.99928 * 179.72352 * 20 19 17 22 22 O 1.21283 * 120.00262 * 0.02562 * 20 19 17 23 23 C 1.47150 * 120.98528 * 180.02562 * 13 11 10 24 24 H 0.96998 * 120.00064 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47080 * 59.99509 * 9 7 2 26 26 H 1.08997 * 109.46855 * 299.99721 * 9 7 2 27 27 H 1.08996 * 109.46777 * 59.99842 * 10 9 7 28 28 H 1.09001 * 109.46743 * 299.99767 * 10 9 7 29 29 H 1.09001 * 109.68307 * 249.21109 * 14 13 11 30 30 H 1.09005 * 109.68089 * 9.72903 * 14 13 11 31 31 H 1.09009 * 109.51317 * 172.22702 * 15 14 13 32 32 H 1.08996 * 109.51668 * 292.32341 * 15 14 13 33 33 H 1.09004 * 109.47066 * 305.24945 * 19 17 16 34 34 H 1.08994 * 109.47405 * 185.24775 * 19 17 16 35 35 H 0.96999 * 120.00047 * 180.27521 * 21 20 19 36 36 H 0.97000 * 120.00317 * 0.28382 * 21 20 19 37 37 H 1.08999 * 109.67976 * 110.78601 * 23 13 11 38 38 H 1.08996 * 109.71401 * 350.25430 * 23 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4918 -4.9672 0.0012 12 8 0.2789 -4.9672 0.0021 13 7 2.1656 -6.1344 0.0018 14 6 3.6369 -6.1596 0.0013 15 6 4.1048 -7.0920 1.1245 16 8 3.4481 -8.3550 0.9921 17 6 2.0262 -8.2921 1.1255 18 1 1.7693 -7.8569 2.0913 19 6 1.4409 -9.7024 1.0287 20 6 1.9099 -10.5226 2.2028 21 7 1.5131 -11.8043 2.3309 22 8 2.6399 -10.0277 3.0353 23 6 1.4518 -7.4212 0.0019 24 1 -0.4850 0.8400 0.0004 25 1 0.6246 -2.5571 -0.8896 26 1 0.6241 -2.5567 0.8903 27 1 2.8719 -3.6043 0.8905 28 1 2.8719 -3.6043 -0.8895 29 1 3.9974 -6.5308 -0.9580 30 1 4.0214 -5.1543 0.1739 31 1 5.1834 -7.2334 1.0548 32 1 3.8571 -6.6516 2.0903 33 1 1.7734 -10.1709 0.1023 34 1 0.3525 -9.6455 1.0368 35 1 1.8117 -12.3310 3.0887 36 1 0.9291 -12.2001 1.6652 37 1 1.5926 -7.9191 -0.9574 38 1 0.3890 -7.2521 0.1750 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118895558.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:02 Heat of formation + Delta-G solvation = -128.297732 kcal Electronic energy + Delta-G solvation = -20813.708128 eV Core-core repulsion = 17462.870557 eV Total energy + Delta-G solvation = -3350.837571 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.36536 -39.40922 -37.97830 -34.50137 -33.94424 -33.58469 -33.02095 -30.97678 -29.02818 -27.39109 -25.26615 -23.63261 -22.28888 -20.97381 -20.56180 -18.66803 -17.63774 -17.18395 -16.90965 -16.79619 -15.93856 -15.47564 -15.34928 -15.03251 -14.78113 -14.55961 -14.39879 -13.75045 -13.52445 -13.11008 -12.59193 -12.35650 -12.13700 -12.07107 -11.86641 -11.37435 -11.10701 -10.91435 -10.74271 -10.61067 -10.17590 -10.07809 -9.96844 -9.93673 -9.63049 -9.20740 -9.02437 -8.38998 -8.30512 -5.96164 -4.00770 2.44926 3.02901 3.16886 3.31243 3.34643 3.39368 3.41151 3.58993 4.46625 4.49539 4.57790 4.84543 4.88625 4.96935 5.10549 5.16069 5.29898 5.36462 5.38704 5.40164 5.60520 5.72314 5.80279 5.91977 6.17753 6.19123 6.49359 6.59725 6.86881 7.01111 7.09938 7.66753 7.73507 7.85085 8.03752 8.06468 8.37450 8.67956 9.07216 9.62746 11.14799 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.041392 B = 0.003400 C = 0.003288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.300205 B = 8234.518087 C = 8515.003513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.528 4.528 8 H 0.055 0.945 9 C 0.038 3.962 10 C -0.128 4.128 11 C 0.515 3.485 12 O -0.532 6.532 13 N -0.628 5.628 14 C 0.074 3.926 15 C 0.051 3.949 16 O -0.369 6.369 17 C 0.093 3.907 18 H 0.072 0.928 19 C -0.135 4.135 20 C 0.519 3.481 21 N -0.862 5.862 22 O -0.529 6.529 23 C 0.083 3.917 24 H 0.262 0.738 25 H 0.023 0.977 26 H 0.023 0.977 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.101 0.899 31 H 0.104 0.896 32 H 0.057 0.943 33 H 0.105 0.895 34 H 0.112 0.888 35 H 0.400 0.600 36 H 0.400 0.600 37 H 0.070 0.930 38 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.479 -23.347 0.628 23.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.566 4.566 8 H 0.074 0.926 9 C 0.000 4.000 10 C -0.168 4.168 11 C 0.306 3.694 12 O -0.407 6.407 13 N -0.365 5.365 14 C -0.050 4.050 15 C -0.026 4.026 16 O -0.287 6.287 17 C 0.034 3.966 18 H 0.090 0.910 19 C -0.176 4.176 20 C 0.304 3.696 21 N -0.426 5.426 22 O -0.404 6.404 23 C -0.041 4.041 24 H 0.071 0.929 25 H 0.042 0.958 26 H 0.042 0.958 27 H 0.098 0.902 28 H 0.098 0.902 29 H 0.091 0.909 30 H 0.119 0.881 31 H 0.122 0.878 32 H 0.076 0.924 33 H 0.124 0.876 34 H 0.130 0.870 35 H 0.230 0.770 36 H 0.228 0.772 37 H 0.088 0.912 38 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 5.212 -22.851 1.027 23.461 hybrid contribution 0.226 0.621 -0.048 0.663 sum 5.438 -22.230 0.979 22.907 Atomic orbital electron populations 1.69987 1.06067 1.26723 1.50069 1.25025 0.94831 0.99231 0.95269 0.86642 0.79543 0.83137 0.78556 1.20242 1.21279 1.20227 1.21176 0.92884 0.90994 1.51578 0.92646 1.18904 0.93151 0.89328 0.98616 1.21893 1.00793 0.91770 1.02348 1.21641 0.88427 0.85318 0.74061 1.90658 1.14344 1.87045 1.48672 1.48324 1.06468 1.05654 1.76052 1.22431 0.80536 1.02230 0.99787 1.22945 0.97663 0.84321 0.97707 1.87926 1.18068 1.29556 1.93196 1.22137 0.82217 0.93684 0.98584 0.91047 1.21674 1.02530 0.94908 0.98448 1.20516 0.79872 0.82164 0.87091 1.43896 1.54386 1.13810 1.30504 1.90782 1.35567 1.70983 1.43023 1.22167 0.98936 0.84462 0.98491 0.92875 0.95825 0.95825 0.90199 0.90155 0.90862 0.88057 0.87773 0.92419 0.87649 0.87022 0.76968 0.77179 0.91191 0.88183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.53 13.29 55.43 0.74 -26.80 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.73 29.54 -169.99 -5.02 16.70 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.53 -15.02 9.11 -34.44 -0.31 -15.34 16 8 H 0.06 1.48 7.74 -52.48 -0.41 1.07 16 9 C 0.04 1.02 4.26 -27.88 -0.12 0.90 16 10 C -0.13 -2.64 4.01 -27.88 -0.11 -2.75 16 11 C 0.51 10.21 7.71 -10.99 -0.08 10.12 16 12 O -0.53 -12.62 15.45 5.55 0.09 -12.53 16 13 N -0.63 -9.60 3.02 -172.25 -0.52 -10.12 16 14 C 0.07 0.88 6.54 -3.53 -0.02 0.86 16 15 C 0.05 0.59 6.98 37.31 0.26 0.85 16 16 O -0.37 -4.76 9.64 -49.34 -0.48 -5.23 16 17 C 0.09 1.11 2.32 -26.56 -0.06 1.05 16 18 H 0.07 1.00 7.95 -51.93 -0.41 0.59 16 19 C -0.14 -1.09 5.41 -27.88 -0.15 -1.24 16 20 C 0.52 5.14 7.98 -10.98 -0.09 5.05 16 21 N -0.86 -4.78 8.87 31.22 0.28 -4.51 16 22 O -0.53 -7.89 16.27 -8.55 -0.14 -8.03 16 23 C 0.08 1.07 5.93 -3.52 -0.02 1.04 16 24 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 25 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 26 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 27 H 0.08 1.50 7.66 -51.93 -0.40 1.11 16 28 H 0.08 1.51 8.02 -51.93 -0.42 1.09 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.10 1.16 6.05 -51.93 -0.31 0.84 16 31 H 0.10 0.94 8.14 -51.92 -0.42 0.52 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.11 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.40 1.99 8.93 -40.82 -0.36 1.62 16 36 H 0.40 0.90 8.83 -40.82 -0.36 0.54 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.10 1.39 7.08 -51.93 -0.37 1.02 16 LS Contribution 318.74 15.07 4.80 4.80 Total: -1.00 -38.16 318.74 -6.62 -44.78 By element: Atomic # 1 Polarization: 4.35 SS G_CDS: -5.55 Total: -1.20 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: -0.81 Total: 2.14 kcal Atomic # 7 Polarization: -41.92 SS G_CDS: 0.49 Total: -41.43 kcal Atomic # 8 Polarization: -25.27 SS G_CDS: -0.53 Total: -25.80 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -38.16 -6.62 -44.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118895558.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.518 kcal (2) G-P(sol) polarization free energy of solvation -38.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds