Wall clock time and date at job start Mon Mar 30 2020 00:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 120.00024 * 2 1 4 4 H 1.48497 * 109.46915 * 240.00023 * 3 2 1 5 5 H 1.48497 * 109.47033 * 359.97438 * 3 2 1 6 6 H 1.48491 * 109.47372 * 119.99886 * 3 2 1 7 7 C 1.37878 * 119.99684 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99284 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00271 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47004 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47004 * 179.97438 * 10 9 7 12 12 O 1.21290 * 120.00027 * 359.97438 * 11 10 9 13 13 N 1.34773 * 120.00272 * 180.02562 * 11 10 9 14 14 C 1.47155 * 120.97861 * 359.97438 * 13 11 10 15 15 C 1.53293 * 108.38144 * 129.48883 * 14 13 11 16 16 O 1.42963 * 109.22584 * 52.30295 * 15 14 13 17 17 C 1.42959 * 114.16525 * 297.42247 * 16 15 14 18 18 H 1.09005 * 109.54828 * 302.62688 * 17 16 15 19 19 C 1.52996 * 109.51283 * 182.50389 * 17 16 15 20 20 C 1.50702 * 109.47159 * 65.24742 * 19 17 16 21 21 N 1.34777 * 119.99928 * 179.72352 * 20 19 17 22 22 O 1.21283 * 120.00262 * 0.02562 * 20 19 17 23 23 C 1.47150 * 120.98528 * 180.02562 * 13 11 10 24 24 H 0.96998 * 120.00064 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47080 * 59.99509 * 9 7 2 26 26 H 1.08997 * 109.46855 * 299.99721 * 9 7 2 27 27 H 1.08996 * 109.46777 * 59.99842 * 10 9 7 28 28 H 1.09001 * 109.46743 * 299.99767 * 10 9 7 29 29 H 1.09001 * 109.68307 * 249.21109 * 14 13 11 30 30 H 1.09005 * 109.68089 * 9.72903 * 14 13 11 31 31 H 1.09009 * 109.51317 * 172.22702 * 15 14 13 32 32 H 1.08996 * 109.51668 * 292.32341 * 15 14 13 33 33 H 1.09004 * 109.47066 * 305.24945 * 19 17 16 34 34 H 1.08994 * 109.47405 * 185.24775 * 19 17 16 35 35 H 0.96999 * 120.00047 * 180.27521 * 21 20 19 36 36 H 0.97000 * 120.00317 * 0.28382 * 21 20 19 37 37 H 1.08999 * 109.67976 * 110.78601 * 23 13 11 38 38 H 1.08996 * 109.71401 * 350.25430 * 23 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4918 -4.9672 0.0012 12 8 0.2789 -4.9672 0.0021 13 7 2.1656 -6.1344 0.0018 14 6 3.6369 -6.1596 0.0013 15 6 4.1048 -7.0920 1.1245 16 8 3.4481 -8.3550 0.9921 17 6 2.0262 -8.2921 1.1255 18 1 1.7693 -7.8569 2.0913 19 6 1.4409 -9.7024 1.0287 20 6 1.9099 -10.5226 2.2028 21 7 1.5131 -11.8043 2.3309 22 8 2.6399 -10.0277 3.0353 23 6 1.4518 -7.4212 0.0019 24 1 -0.4850 0.8400 0.0004 25 1 0.6246 -2.5571 -0.8896 26 1 0.6241 -2.5567 0.8903 27 1 2.8719 -3.6043 0.8905 28 1 2.8719 -3.6043 -0.8895 29 1 3.9974 -6.5308 -0.9580 30 1 4.0214 -5.1543 0.1739 31 1 5.1834 -7.2334 1.0548 32 1 3.8571 -6.6516 2.0903 33 1 1.7734 -10.1709 0.1023 34 1 0.3525 -9.6455 1.0368 35 1 1.8117 -12.3310 3.0887 36 1 0.9291 -12.2001 1.6652 37 1 1.5926 -7.9191 -0.9574 38 1 0.3890 -7.2521 0.1750 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118895558.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:01 Heat of formation + Delta-G solvation = -159.120921 kcal Electronic energy + Delta-G solvation = -20815.044721 eV Core-core repulsion = 17462.870557 eV Total energy + Delta-G solvation = -3352.174165 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.48739 -40.42494 -39.18910 -35.77029 -35.62734 -34.66301 -33.99262 -32.90446 -29.95346 -28.84236 -26.98598 -24.61457 -23.88531 -22.37860 -21.32925 -20.03409 -18.90734 -18.30611 -17.84089 -17.73726 -17.59421 -16.76047 -16.69690 -16.41650 -15.98710 -15.63965 -15.62115 -14.92881 -14.87280 -14.33877 -14.15923 -13.87434 -13.49290 -13.24514 -13.00067 -12.79606 -12.74231 -12.49532 -12.27988 -11.94243 -11.75440 -11.58232 -11.33267 -11.16018 -11.02498 -10.68880 -10.58511 -10.56319 -9.57727 -8.18321 -6.32635 1.42134 1.46751 1.54379 1.60638 1.72240 1.87405 2.42853 2.63055 2.73630 3.14596 3.61673 3.71579 3.81154 3.99926 4.03392 4.16373 4.31206 4.40147 4.44750 4.49494 4.52885 4.62989 4.64765 4.77777 4.85821 4.98412 5.05475 5.42183 5.50492 5.60605 5.83724 5.95930 6.13803 6.16283 6.28731 6.53280 6.85221 7.17374 7.37661 7.43128 8.94275 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.041392 B = 0.003400 C = 0.003288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.300205 B = 8234.518087 C = 8515.003513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.007 4.007 3 Si 0.974 3.026 4 H -0.261 1.261 5 H -0.288 1.288 6 H -0.263 1.263 7 C -0.544 4.544 8 H 0.077 0.923 9 C 0.044 3.956 10 C -0.117 4.117 11 C 0.513 3.487 12 O -0.585 6.585 13 N -0.620 5.620 14 C 0.070 3.930 15 C 0.050 3.950 16 O -0.377 6.377 17 C 0.097 3.903 18 H 0.040 0.960 19 C -0.129 4.129 20 C 0.514 3.486 21 N -0.839 5.839 22 O -0.589 6.589 23 C 0.082 3.918 24 H 0.263 0.737 25 H -0.017 1.017 26 H -0.020 1.020 27 H 0.101 0.899 28 H 0.106 0.894 29 H 0.099 0.901 30 H 0.109 0.891 31 H 0.134 0.866 32 H 0.041 0.959 33 H 0.134 0.866 34 H 0.139 0.861 35 H 0.405 0.595 36 H 0.419 0.581 37 H 0.098 0.902 38 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.716 -24.508 -0.284 25.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.204 4.204 3 Si 0.798 3.202 4 H -0.186 1.186 5 H -0.213 1.213 6 H -0.187 1.187 7 C -0.582 4.582 8 H 0.095 0.905 9 C 0.006 3.994 10 C -0.156 4.156 11 C 0.303 3.697 12 O -0.465 6.465 13 N -0.355 5.355 14 C -0.052 4.052 15 C -0.027 4.027 16 O -0.295 6.295 17 C 0.037 3.963 18 H 0.058 0.942 19 C -0.169 4.169 20 C 0.300 3.700 21 N -0.404 5.404 22 O -0.468 6.468 23 C -0.041 4.041 24 H 0.072 0.928 25 H 0.002 0.998 26 H -0.001 1.001 27 H 0.119 0.881 28 H 0.124 0.876 29 H 0.117 0.883 30 H 0.127 0.873 31 H 0.151 0.849 32 H 0.060 0.940 33 H 0.152 0.848 34 H 0.156 0.844 35 H 0.236 0.764 36 H 0.251 0.749 37 H 0.116 0.884 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 7.481 -24.110 0.093 25.244 hybrid contribution -0.486 0.856 0.240 1.013 sum 6.995 -23.254 0.333 24.285 Atomic orbital electron populations 1.70172 1.08330 1.27907 1.51368 1.26146 0.95730 1.03968 0.94581 0.85365 0.78055 0.77280 0.79505 1.18565 1.21346 1.18742 1.21679 0.94019 0.91542 1.50970 0.90526 1.18681 0.93641 0.92392 0.94665 1.21651 0.99403 0.90009 1.04542 1.21419 0.87694 0.86477 0.74089 1.90637 1.16404 1.87875 1.51561 1.48301 1.08148 1.05199 1.73812 1.22731 0.78059 1.03119 1.01327 1.23067 0.99223 0.83779 0.96634 1.87930 1.18405 1.30182 1.92992 1.22097 0.82063 0.95681 0.96444 0.94162 1.21723 1.03884 0.92389 0.98919 1.20831 0.79174 0.83202 0.86815 1.43712 1.53377 1.12432 1.30837 1.90762 1.38528 1.72394 1.45149 1.22359 0.98024 0.83414 1.00304 0.92827 0.99834 1.00115 0.88075 0.87600 0.88317 0.87311 0.84853 0.94044 0.84775 0.84368 0.76392 0.74930 0.88396 0.89645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.89 13.29 21.45 0.28 -59.61 16 2 C -0.01 -0.40 5.46 84.65 0.46 0.07 16 3 Si 0.97 44.42 29.54 68.60 2.03 46.45 16 4 H -0.26 -11.18 7.11 99.48 0.71 -10.48 16 5 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 6 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 7 C -0.54 -31.16 9.11 25.60 0.23 -30.92 16 8 H 0.08 3.96 7.74 -2.91 -0.02 3.94 16 9 C 0.04 2.47 4.26 29.85 0.13 2.60 16 10 C -0.12 -4.78 4.01 29.85 0.12 -4.66 16 11 C 0.51 20.61 7.71 87.66 0.68 21.29 16 12 O -0.59 -29.11 15.45 -3.06 -0.05 -29.16 16 13 N -0.62 -18.34 3.02 -817.28 -2.47 -20.81 16 14 C 0.07 1.49 6.54 86.35 0.56 2.05 16 15 C 0.05 1.06 6.98 72.08 0.50 1.56 16 16 O -0.38 -9.05 9.64 -135.49 -1.31 -10.35 16 17 C 0.10 2.20 2.32 30.70 0.07 2.27 16 18 H 0.04 1.17 7.95 -2.38 -0.02 1.15 16 19 C -0.13 -1.79 5.41 29.85 0.16 -1.63 16 20 C 0.51 9.44 7.98 87.66 0.70 10.14 16 21 N -0.84 -7.43 8.87 -173.53 -1.54 -8.97 16 22 O -0.59 -17.55 16.27 10.45 0.17 -17.38 16 23 C 0.08 2.00 5.93 86.37 0.51 2.51 16 24 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 25 H -0.02 -1.07 8.10 -2.39 -0.02 -1.08 16 26 H -0.02 -1.25 8.10 -2.39 -0.02 -1.27 16 27 H 0.10 3.69 7.66 -2.39 -0.02 3.68 16 28 H 0.11 3.78 8.02 -2.39 -0.02 3.76 16 29 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.11 2.18 6.05 -2.38 -0.01 2.16 16 31 H 0.13 2.02 8.14 -2.38 -0.02 2.00 16 32 H 0.04 1.00 8.14 -2.39 -0.02 0.99 16 33 H 0.13 1.13 8.14 -2.38 -0.02 1.11 16 34 H 0.14 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.41 3.28 8.93 -92.71 -0.83 2.45 16 36 H 0.42 0.57 8.83 -92.71 -0.82 -0.25 16 37 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.09 2.38 7.08 -2.39 -0.02 2.37 16 Total: -1.00 -87.99 318.74 0.69 -87.30 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -0.56 Total: 7.26 kcal Atomic # 6 Polarization: 1.14 SS G_CDS: 4.13 Total: 5.27 kcal Atomic # 7 Polarization: -85.67 SS G_CDS: -3.72 Total: -89.39 kcal Atomic # 8 Polarization: -55.71 SS G_CDS: -1.18 Total: -56.89 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -87.99 0.69 -87.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118895558.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.821 kcal (2) G-P(sol) polarization free energy of solvation -87.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds