Wall clock time and date at job start Mon Mar 30 2020 02:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47074 * 2 1 4 4 C 1.50699 * 109.47175 * 239.99536 * 2 1 3 5 5 H 1.07996 * 120.00041 * 245.37531 * 4 2 1 6 6 C 1.37879 * 120.00040 * 65.38571 * 4 2 1 7 7 N 1.31505 * 120.00055 * 184.88901 * 6 4 2 8 8 Si 1.86801 * 119.99829 * 5.15649 * 6 4 2 9 9 H 1.48507 * 109.46998 * 269.72922 * 8 6 4 10 10 H 1.48499 * 109.47175 * 29.72656 * 8 6 4 11 11 H 1.48497 * 109.47047 * 149.72923 * 8 6 4 12 12 C 1.50703 * 109.46913 * 119.99725 * 2 1 3 13 13 O 1.21281 * 119.99893 * 120.00166 * 12 2 1 14 14 N 1.34781 * 119.99867 * 300.00065 * 12 2 1 15 15 N 1.40102 * 119.99844 * 180.02562 * 14 12 2 16 16 C 1.34771 * 119.99925 * 180.02562 * 15 14 12 17 17 O 1.21281 * 120.00159 * 0.02562 * 16 15 14 18 18 C 1.50703 * 119.99947 * 179.97438 * 16 15 14 19 19 C 1.53178 * 109.54428 * 299.55603 * 18 16 15 20 20 C 1.53096 * 109.16116 * 183.15061 * 19 18 16 21 21 O 1.42904 * 109.41193 * 57.61184 * 20 19 18 22 22 C 1.42905 * 114.09847 * 298.83219 * 21 20 19 23 23 C 1.53093 * 109.40724 * 61.16425 * 22 21 20 24 24 H 1.08997 * 109.47139 * 174.99054 * 1 2 3 25 25 H 1.09000 * 109.47363 * 294.99222 * 1 2 3 26 26 H 1.09003 * 109.47063 * 54.99304 * 1 2 3 27 27 H 0.97006 * 120.00256 * 355.26301 * 7 6 4 28 28 H 0.97000 * 120.00078 * 359.97438 * 14 12 2 29 29 H 0.97001 * 120.00097 * 0.02562 * 15 14 12 30 30 H 1.09006 * 109.54124 * 59.82501 * 18 16 15 31 31 H 1.08999 * 109.51858 * 303.05641 * 19 18 16 32 32 H 1.08996 * 109.52142 * 63.24708 * 19 18 16 33 33 H 1.08992 * 109.48163 * 297.62726 * 20 19 18 34 34 H 1.08997 * 109.47564 * 177.58935 * 20 19 18 35 35 H 1.08997 * 109.48105 * 301.18431 * 22 21 20 36 36 H 1.08992 * 109.48779 * 181.14903 * 22 21 20 37 37 H 1.09008 * 109.52185 * 182.48351 * 23 22 21 38 38 H 1.09001 * 109.52454 * 62.29680 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.5797 -1.6364 -1.1336 6 6 1.7932 -0.1784 -2.4797 7 7 2.1464 -0.8449 -3.5569 8 14 0.9744 1.4928 -2.6419 9 1 -0.4985 1.3174 -2.7142 10 1 1.3161 2.3280 -1.4626 11 1 1.4546 2.1613 -3.8779 12 6 2.0323 -0.7104 1.2305 13 8 2.7296 -1.6964 1.1193 14 7 1.7066 -0.2498 2.4546 15 7 2.1740 -0.9099 3.5986 16 6 1.8480 -0.4497 4.8226 17 8 1.1496 0.5356 4.9339 18 6 2.3503 -1.1601 6.0532 19 6 1.8320 -2.6015 6.0602 20 6 2.2815 -3.2908 7.3511 21 8 1.7996 -2.5530 8.4761 22 6 2.2892 -1.2124 8.5478 23 6 1.8401 -0.4396 7.3049 24 1 -0.3633 -1.0237 -0.0897 25 1 -0.3634 0.4342 0.9314 26 1 -0.3633 0.5896 -0.8418 27 1 2.6362 -1.6780 -3.4730 28 1 1.1493 0.5391 2.5436 29 1 2.7323 -1.6981 3.5097 30 1 3.4403 -1.1631 6.0530 31 1 0.7432 -2.5973 6.0095 32 1 2.2355 -3.1378 5.2014 33 1 3.3702 -3.3306 7.3819 34 1 1.8795 -4.3035 7.3813 35 1 3.3781 -1.2251 8.5942 36 1 1.8929 -0.7278 9.4401 37 1 2.2493 0.5702 7.3362 38 1 0.7514 -0.3918 7.2794 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119443814.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:22 Heat of formation + Delta-G solvation = -101.809075 kcal Electronic energy + Delta-G solvation = -20867.371543 eV Core-core repulsion = 17517.682606 eV Total energy + Delta-G solvation = -3349.688936 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.63443 -39.34006 -38.36753 -35.09082 -34.12081 -33.96830 -31.77647 -31.40840 -30.13004 -26.15414 -24.93948 -23.90726 -22.90722 -21.67628 -20.65442 -19.56196 -17.79126 -17.43611 -17.31628 -16.35467 -16.31361 -15.82201 -15.27975 -15.09101 -14.75305 -14.10392 -14.04341 -13.96731 -13.46844 -13.27995 -12.88634 -12.72549 -11.99675 -11.89096 -11.73338 -11.69275 -11.36903 -11.13705 -10.90483 -10.82826 -10.65687 -10.32093 -10.26698 -9.86853 -9.82208 -9.08683 -8.73889 -8.51036 -8.08503 -6.50851 -4.14937 2.08344 2.37313 3.28254 3.35300 3.36327 3.51411 3.52376 4.02925 4.24147 4.37540 4.41572 4.56732 4.65170 4.83532 4.91582 5.07598 5.16617 5.23677 5.23980 5.32759 5.43253 5.60199 5.66249 5.72954 5.92811 6.08047 6.21398 6.35366 6.64432 6.82355 6.91786 6.94902 7.08745 7.61263 8.01240 8.05767 8.39928 8.86992 8.92389 9.56369 10.91429 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.044105 B = 0.003667 C = 0.003485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.694836 B = 7634.627990 C = 8032.611283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.009 3.991 3 H 0.058 0.942 4 C -0.585 4.585 5 H 0.077 0.923 6 C 0.028 3.972 7 N -0.908 5.908 8 Si 1.053 2.947 9 H -0.282 1.282 10 H -0.279 1.279 11 H -0.288 1.288 12 C 0.530 3.470 13 O -0.535 6.535 14 N -0.542 5.542 15 N -0.521 5.521 16 C 0.513 3.487 17 O -0.544 6.544 18 C -0.099 4.099 19 C -0.152 4.152 20 C 0.063 3.937 21 O -0.383 6.383 22 C 0.061 3.939 23 C -0.135 4.135 24 H 0.058 0.942 25 H 0.032 0.968 26 H 0.056 0.944 27 H 0.270 0.730 28 H 0.427 0.573 29 H 0.428 0.572 30 H 0.102 0.898 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.055 0.945 34 H 0.099 0.901 35 H 0.052 0.948 36 H 0.098 0.902 37 H 0.083 0.917 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.102 -0.246 22.362 22.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.015 4.015 3 H 0.076 0.924 4 C -0.623 4.623 5 H 0.095 0.905 6 C -0.176 4.176 7 N -0.542 5.542 8 Si 0.883 3.117 9 H -0.208 1.208 10 H -0.205 1.205 11 H -0.214 1.214 12 C 0.319 3.681 13 O -0.408 6.408 14 N -0.294 5.294 15 N -0.266 5.266 16 C 0.299 3.701 17 O -0.421 6.421 18 C -0.122 4.122 19 C -0.190 4.190 20 C -0.013 4.013 21 O -0.301 6.301 22 C -0.016 4.016 23 C -0.173 4.173 24 H 0.077 0.923 25 H 0.051 0.949 26 H 0.075 0.925 27 H 0.080 0.920 28 H 0.268 0.732 29 H 0.269 0.731 30 H 0.120 0.880 31 H 0.100 0.900 32 H 0.101 0.899 33 H 0.073 0.927 34 H 0.117 0.883 35 H 0.070 0.930 36 H 0.116 0.884 37 H 0.101 0.899 38 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.780 0.724 21.338 21.365 hybrid contribution 0.823 -0.998 0.782 1.512 sum 0.043 -0.275 22.121 22.123 Atomic orbital electron populations 1.22145 0.96796 1.02017 0.99511 1.19391 0.93729 0.97715 0.90643 0.92390 1.22002 1.39935 1.10993 0.89371 0.90520 1.25782 0.96591 1.03484 0.91761 1.70785 1.36365 1.16974 1.30085 0.83880 0.76395 0.75577 0.75870 1.20849 1.20510 1.21408 1.22026 0.79127 0.84822 0.82150 1.90576 1.37826 1.26564 1.85835 1.45770 1.55179 1.31347 0.97080 1.44914 1.52564 1.30498 0.98601 1.20717 0.81169 0.85161 0.83069 1.90710 1.38442 1.26613 1.86299 1.21310 1.02213 0.96034 0.92599 1.22277 1.03143 0.93836 0.99777 1.22578 0.98563 0.95557 0.84647 1.87955 1.71738 1.24610 1.45825 1.22638 0.98336 0.82564 0.98054 1.22038 1.03297 0.99552 0.92409 0.92326 0.94851 0.92530 0.91989 0.73163 0.73086 0.87964 0.90010 0.89928 0.92716 0.88275 0.92958 0.88356 0.89886 0.89874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.95 8.73 37.16 0.32 -2.63 16 2 C 0.01 0.20 2.22 -92.92 -0.21 -0.01 16 3 H 0.06 1.28 6.64 -51.93 -0.34 0.93 16 4 C -0.58 -16.43 8.72 -34.44 -0.30 -16.73 16 5 H 0.08 2.43 7.00 -52.49 -0.37 2.06 16 6 C 0.03 0.81 5.43 -17.82 -0.10 0.71 16 7 N -0.91 -27.77 13.70 55.43 0.76 -27.01 16 8 Si 1.05 24.34 25.28 -169.99 -4.30 20.04 16 9 H -0.28 -6.13 6.82 56.52 0.39 -5.74 16 10 H -0.28 -5.83 6.35 56.52 0.36 -5.47 16 11 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 12 C 0.53 11.38 7.27 -10.98 -0.08 11.30 16 13 O -0.54 -13.12 15.31 5.56 0.09 -13.03 16 14 N -0.54 -9.43 6.12 31.22 0.19 -9.24 16 15 N -0.52 -7.62 6.17 31.22 0.19 -7.42 16 16 C 0.51 6.84 7.27 -10.99 -0.08 6.76 16 17 O -0.54 -8.91 15.81 5.56 0.09 -8.82 16 18 C -0.10 -0.92 2.61 -91.59 -0.24 -1.16 16 19 C -0.15 -1.26 5.30 -26.59 -0.14 -1.40 16 20 C 0.06 0.47 6.84 37.21 0.25 0.72 16 21 O -0.38 -3.56 10.77 -35.23 -0.38 -3.94 16 22 C 0.06 0.45 6.84 37.21 0.25 0.71 16 23 C -0.13 -1.21 4.73 -26.59 -0.13 -1.33 16 24 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 25 H 0.03 0.54 7.43 -51.93 -0.39 0.16 16 26 H 0.06 1.14 4.41 -51.93 -0.23 0.91 16 27 H 0.27 8.31 8.72 -40.82 -0.36 7.96 16 28 H 0.43 6.92 7.36 -182.60 -1.34 5.58 16 29 H 0.43 5.77 7.52 -182.60 -1.37 4.40 16 30 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.08 0.62 7.70 -51.93 -0.40 0.22 16 33 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.08 0.73 8.14 -51.92 -0.42 0.31 16 38 H 0.08 0.88 8.02 -51.93 -0.42 0.46 16 LS Contribution 309.32 15.07 4.66 4.66 Total: -1.00 -34.12 309.32 -6.59 -40.71 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: -7.45 Total: 7.12 kcal Atomic # 6 Polarization: -2.63 SS G_CDS: -0.44 Total: -3.06 kcal Atomic # 7 Polarization: -44.82 SS G_CDS: 1.14 Total: -43.67 kcal Atomic # 8 Polarization: -25.59 SS G_CDS: -0.21 Total: -25.80 kcal Atomic # 14 Polarization: 24.34 SS G_CDS: -4.30 Total: 20.04 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -34.12 -6.59 -40.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119443814.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.100 kcal (2) G-P(sol) polarization free energy of solvation -34.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds