Wall clock time and date at job start Mon Mar 30 2020 02:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47074 * 2 1 4 4 C 1.50699 * 109.47175 * 239.99536 * 2 1 3 5 5 H 1.07996 * 120.00041 * 245.37531 * 4 2 1 6 6 C 1.37879 * 120.00040 * 65.38571 * 4 2 1 7 7 N 1.31505 * 120.00055 * 184.88901 * 6 4 2 8 8 Si 1.86801 * 119.99829 * 5.15649 * 6 4 2 9 9 H 1.48507 * 109.46998 * 269.72922 * 8 6 4 10 10 H 1.48499 * 109.47175 * 29.72656 * 8 6 4 11 11 H 1.48497 * 109.47047 * 149.72923 * 8 6 4 12 12 C 1.50703 * 109.46913 * 119.99725 * 2 1 3 13 13 O 1.21281 * 119.99893 * 120.00166 * 12 2 1 14 14 N 1.34781 * 119.99867 * 300.00065 * 12 2 1 15 15 N 1.40102 * 119.99844 * 180.02562 * 14 12 2 16 16 C 1.34771 * 119.99925 * 180.02562 * 15 14 12 17 17 O 1.21281 * 120.00159 * 0.02562 * 16 15 14 18 18 C 1.50703 * 119.99947 * 179.97438 * 16 15 14 19 19 C 1.53178 * 109.54428 * 299.55603 * 18 16 15 20 20 C 1.53096 * 109.16116 * 183.15061 * 19 18 16 21 21 O 1.42904 * 109.41193 * 57.61184 * 20 19 18 22 22 C 1.42905 * 114.09847 * 298.83219 * 21 20 19 23 23 C 1.53093 * 109.40724 * 61.16425 * 22 21 20 24 24 H 1.08997 * 109.47139 * 174.99054 * 1 2 3 25 25 H 1.09000 * 109.47363 * 294.99222 * 1 2 3 26 26 H 1.09003 * 109.47063 * 54.99304 * 1 2 3 27 27 H 0.97006 * 120.00256 * 355.26301 * 7 6 4 28 28 H 0.97000 * 120.00078 * 359.97438 * 14 12 2 29 29 H 0.97001 * 120.00097 * 0.02562 * 15 14 12 30 30 H 1.09006 * 109.54124 * 59.82501 * 18 16 15 31 31 H 1.08999 * 109.51858 * 303.05641 * 19 18 16 32 32 H 1.08996 * 109.52142 * 63.24708 * 19 18 16 33 33 H 1.08992 * 109.48163 * 297.62726 * 20 19 18 34 34 H 1.08997 * 109.47564 * 177.58935 * 20 19 18 35 35 H 1.08997 * 109.48105 * 301.18431 * 22 21 20 36 36 H 1.08992 * 109.48779 * 181.14903 * 22 21 20 37 37 H 1.09008 * 109.52185 * 182.48351 * 23 22 21 38 38 H 1.09001 * 109.52454 * 62.29680 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.5797 -1.6364 -1.1336 6 6 1.7932 -0.1784 -2.4797 7 7 2.1464 -0.8449 -3.5569 8 14 0.9744 1.4928 -2.6419 9 1 -0.4985 1.3174 -2.7142 10 1 1.3161 2.3280 -1.4626 11 1 1.4546 2.1613 -3.8779 12 6 2.0323 -0.7104 1.2305 13 8 2.7296 -1.6964 1.1193 14 7 1.7066 -0.2498 2.4546 15 7 2.1740 -0.9099 3.5986 16 6 1.8480 -0.4497 4.8226 17 8 1.1496 0.5356 4.9339 18 6 2.3503 -1.1601 6.0532 19 6 1.8320 -2.6015 6.0602 20 6 2.2815 -3.2908 7.3511 21 8 1.7996 -2.5530 8.4761 22 6 2.2892 -1.2124 8.5478 23 6 1.8401 -0.4396 7.3049 24 1 -0.3633 -1.0237 -0.0897 25 1 -0.3634 0.4342 0.9314 26 1 -0.3633 0.5896 -0.8418 27 1 2.6362 -1.6780 -3.4730 28 1 1.1493 0.5391 2.5436 29 1 2.7323 -1.6981 3.5097 30 1 3.4403 -1.1631 6.0530 31 1 0.7432 -2.5973 6.0095 32 1 2.2355 -3.1378 5.2014 33 1 3.3702 -3.3306 7.3819 34 1 1.8795 -4.3035 7.3813 35 1 3.3781 -1.2251 8.5942 36 1 1.8929 -0.7278 9.4401 37 1 2.2493 0.5702 7.3362 38 1 0.7514 -0.3918 7.2794 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119443814.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:22 Heat of formation + Delta-G solvation = -129.299545 kcal Electronic energy + Delta-G solvation = -20868.563619 eV Core-core repulsion = 17517.682606 eV Total energy + Delta-G solvation = -3350.881013 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.74450 -40.62140 -39.46196 -36.51347 -35.92205 -34.92621 -33.58599 -32.18318 -31.51977 -26.99457 -26.84891 -24.73342 -24.40048 -22.77594 -21.85284 -20.79487 -19.61027 -18.90016 -18.67373 -17.41185 -17.08255 -16.95700 -16.42433 -16.25400 -15.76226 -15.65787 -15.25090 -15.12444 -14.74566 -14.54283 -14.33002 -13.95599 -13.54248 -13.33733 -13.13036 -12.62404 -12.43649 -12.41945 -12.33100 -12.04519 -11.77464 -11.58539 -11.56392 -11.21773 -10.88525 -10.85316 -10.63113 -10.49055 -9.48019 -8.78420 -6.43110 0.79295 1.21376 1.47142 1.58357 1.71290 1.73160 2.51287 2.88312 3.02107 3.09321 3.41971 3.59820 3.69191 3.96546 3.99827 4.19486 4.28441 4.37537 4.46732 4.56658 4.57470 4.63633 4.71124 4.77418 4.82074 4.99023 5.03452 5.07783 5.22632 5.40802 5.54781 5.57656 5.84897 6.03895 6.26270 6.50197 6.56413 6.81277 7.31577 7.40877 8.63204 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.044105 B = 0.003667 C = 0.003485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.694836 B = 7634.627990 C = 8032.611283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.002 3.998 3 H 0.078 0.922 4 C -0.591 4.591 5 H 0.023 0.977 6 C -0.025 4.025 7 N -0.943 5.943 8 Si 1.093 2.907 9 H -0.256 1.256 10 H -0.237 1.237 11 H -0.295 1.295 12 C 0.531 3.469 13 O -0.576 6.576 14 N -0.528 5.528 15 N -0.520 5.520 16 C 0.517 3.483 17 O -0.572 6.572 18 C -0.092 4.092 19 C -0.150 4.150 20 C 0.062 3.938 21 O -0.403 6.403 22 C 0.062 3.938 23 C -0.132 4.132 24 H 0.043 0.957 25 H 0.076 0.924 26 H 0.061 0.939 27 H 0.249 0.751 28 H 0.435 0.565 29 H 0.433 0.567 30 H 0.130 0.870 31 H 0.065 0.935 32 H 0.091 0.909 33 H 0.074 0.926 34 H 0.109 0.891 35 H 0.072 0.928 36 H 0.109 0.891 37 H 0.084 0.916 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.692 1.350 24.800 24.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.022 4.022 3 H 0.096 0.904 4 C -0.629 4.629 5 H 0.041 0.959 6 C -0.221 4.221 7 N -0.579 5.579 8 Si 0.913 3.087 9 H -0.181 1.181 10 H -0.161 1.161 11 H -0.222 1.222 12 C 0.320 3.680 13 O -0.452 6.452 14 N -0.278 5.278 15 N -0.267 5.267 16 C 0.305 3.695 17 O -0.450 6.450 18 C -0.115 4.115 19 C -0.188 4.188 20 C -0.014 4.014 21 O -0.322 6.322 22 C -0.014 4.014 23 C -0.170 4.170 24 H 0.063 0.937 25 H 0.094 0.906 26 H 0.079 0.921 27 H 0.058 0.942 28 H 0.279 0.721 29 H 0.276 0.724 30 H 0.148 0.852 31 H 0.084 0.916 32 H 0.110 0.890 33 H 0.092 0.908 34 H 0.127 0.873 35 H 0.090 0.910 36 H 0.127 0.873 37 H 0.103 0.897 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.386 2.321 23.847 24.000 hybrid contribution 1.047 -1.563 0.136 1.887 sum -0.339 0.758 23.983 23.998 Atomic orbital electron populations 1.22037 0.94094 1.01782 1.02020 1.19330 0.95754 0.97839 0.89237 0.90435 1.22090 1.39069 1.09439 0.92306 0.95902 1.27456 0.96600 1.06859 0.91221 1.70938 1.38508 1.16945 1.31493 0.83479 0.76921 0.71088 0.77212 1.18087 1.16069 1.22173 1.21616 0.78875 0.84273 0.83221 1.90566 1.39782 1.28325 1.86555 1.45280 1.54131 1.31098 0.97308 1.45159 1.52986 1.30759 0.97815 1.21544 0.80065 0.84645 0.83269 1.90700 1.39651 1.28026 1.86624 1.21420 1.03729 0.96028 0.90273 1.22277 1.02161 0.93337 1.01012 1.22702 0.99757 0.95601 0.83341 1.87937 1.72415 1.25393 1.46479 1.22736 0.99529 0.81667 0.97489 1.22027 1.01970 1.00010 0.93037 0.93735 0.90556 0.92053 0.94192 0.72115 0.72427 0.85185 0.91646 0.89048 0.90769 0.87345 0.90962 0.87281 0.89711 0.91995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.31 8.73 71.98 0.63 -4.68 16 2 C 0.00 0.07 2.22 -12.29 -0.03 0.05 16 3 H 0.08 3.18 6.64 -2.39 -0.02 3.16 16 4 C -0.59 -34.00 8.72 25.60 0.22 -33.78 16 5 H 0.02 1.53 7.00 -2.91 -0.02 1.50 16 6 C -0.02 -1.43 5.43 84.66 0.46 -0.97 16 7 N -0.94 -59.79 13.70 21.45 0.29 -59.50 16 8 Si 1.09 47.21 25.28 68.60 1.73 48.94 16 9 H -0.26 -9.98 6.82 99.48 0.68 -9.30 16 10 H -0.24 -8.59 6.35 99.48 0.63 -7.96 16 11 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 12 C 0.53 22.48 7.27 87.66 0.64 23.11 16 13 O -0.58 -28.76 15.31 -3.03 -0.05 -28.81 16 14 N -0.53 -17.40 6.12 -173.53 -1.06 -18.46 16 15 N -0.52 -14.33 6.17 -173.54 -1.07 -15.40 16 16 C 0.52 12.75 7.27 87.66 0.64 13.39 16 17 O -0.57 -17.69 15.81 -3.03 -0.05 -17.74 16 18 C -0.09 -1.49 2.61 -11.42 -0.03 -1.52 16 19 C -0.15 -2.18 5.30 30.69 0.16 -2.02 16 20 C 0.06 0.75 6.84 72.01 0.49 1.25 16 21 O -0.40 -6.56 10.77 -148.98 -1.60 -8.16 16 22 C 0.06 0.76 6.84 72.01 0.49 1.25 16 23 C -0.13 -2.10 4.73 30.68 0.15 -1.95 16 24 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 25 H 0.08 2.20 7.43 -2.39 -0.02 2.18 16 26 H 0.06 2.25 4.41 -2.39 -0.01 2.24 16 27 H 0.25 16.32 8.72 -92.70 -0.81 15.51 16 28 H 0.44 12.90 7.36 -213.32 -1.57 11.33 16 29 H 0.43 11.09 7.52 -213.32 -1.60 9.48 16 30 H 0.13 1.45 8.14 -2.38 -0.02 1.43 16 31 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.09 1.17 7.70 -2.39 -0.02 1.16 16 33 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 38 H 0.06 1.25 8.02 -2.39 -0.02 1.23 16 Total: -1.00 -77.66 309.32 -0.20 -77.87 By element: Atomic # 1 Polarization: 29.36 SS G_CDS: -2.22 Total: 27.14 kcal Atomic # 6 Polarization: -9.69 SS G_CDS: 3.82 Total: -5.87 kcal Atomic # 7 Polarization: -91.52 SS G_CDS: -1.84 Total: -93.36 kcal Atomic # 8 Polarization: -53.01 SS G_CDS: -1.70 Total: -54.71 kcal Atomic # 14 Polarization: 47.21 SS G_CDS: 1.73 Total: 48.94 kcal Total: -77.66 -0.20 -77.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119443814.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.433 kcal (2) G-P(sol) polarization free energy of solvation -77.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds