Wall clock time and date at job start Mon Mar 30 2020 02:22:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 C 1.50698 * 109.46939 * 240.00503 * 2 1 3 13 13 O 1.21280 * 119.99901 * 239.99860 * 12 2 1 14 14 N 1.34774 * 120.00338 * 59.99981 * 12 2 1 15 15 N 1.40105 * 120.00185 * 179.97438 * 14 12 2 16 16 C 1.34776 * 119.99586 * 179.97438 * 15 14 12 17 17 O 1.21280 * 120.00359 * 0.02562 * 16 15 14 18 18 C 1.50699 * 119.99365 * 180.02562 * 16 15 14 19 19 C 1.53181 * 109.54299 * 299.55379 * 18 16 15 20 20 C 1.53095 * 109.16117 * 183.15799 * 19 18 16 21 21 O 1.42896 * 109.41833 * 57.60929 * 20 19 18 22 22 C 1.42903 * 114.10061 * 298.84191 * 21 20 19 23 23 C 1.53092 * 109.41553 * 61.15595 * 22 21 20 24 24 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 25 25 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 27 27 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 28 28 H 0.97006 * 120.00251 * 0.02562 * 14 12 2 29 29 H 0.96997 * 119.99768 * 0.02562 * 15 14 12 30 30 H 1.08996 * 109.54652 * 59.82496 * 18 16 15 31 31 H 1.09001 * 109.52471 * 303.05805 * 19 18 16 32 32 H 1.08995 * 109.51997 * 63.25199 * 19 18 16 33 33 H 1.08999 * 109.47984 * 297.62284 * 20 19 18 34 34 H 1.09001 * 109.47755 * 177.59267 * 20 19 18 35 35 H 1.09005 * 109.47994 * 301.17480 * 22 21 20 36 36 H 1.08996 * 109.49161 * 181.14773 * 22 21 20 37 37 H 1.08999 * 109.52593 * 182.48723 * 23 22 21 38 38 H 1.09003 * 109.52250 * 62.29662 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 6 2.0323 -0.7103 -1.2305 13 8 2.7295 -1.6964 -1.1193 14 7 1.7067 -0.2498 -2.4546 15 7 2.1741 -0.9099 -3.5986 16 6 1.8481 -0.4496 -4.8226 17 8 1.1504 0.5363 -4.9338 18 6 2.3504 -1.1599 -6.0531 19 6 3.8822 -1.1506 -6.0607 20 6 4.3822 -1.8041 -7.3517 21 8 3.8464 -1.1046 -8.4767 22 6 2.4192 -1.1203 -8.5478 23 6 1.8402 -0.4394 -7.3049 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 0.7089 1.1611 3.4845 28 1 1.1493 0.5391 -2.5436 29 1 2.7318 -1.6985 -3.5096 30 1 1.9907 -2.1888 -6.0526 31 1 4.2405 -0.1224 -6.0105 32 1 4.2540 -1.7093 -5.2019 33 1 4.0576 -2.8441 -7.3821 34 1 5.4710 -1.7618 -7.3824 35 1 2.0689 -2.1515 -8.5938 36 1 2.0937 -0.5856 -9.4401 37 1 0.7518 -0.4894 -7.3358 38 1 2.1573 0.6032 -7.2797 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119443816.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:25 Heat of formation + Delta-G solvation = -103.280687 kcal Electronic energy + Delta-G solvation = -20790.774097 eV Core-core repulsion = 17441.021346 eV Total energy + Delta-G solvation = -3349.752750 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.54621 -39.22276 -38.24970 -34.96779 -34.05138 -33.86825 -31.58775 -31.18625 -29.69336 -26.06818 -25.21753 -23.85542 -22.89076 -21.60848 -20.61813 -19.60827 -17.61920 -17.35104 -16.35521 -16.31015 -16.04062 -15.57558 -15.30207 -15.05288 -14.57881 -14.30198 -14.03127 -13.90865 -13.35764 -13.19645 -12.69020 -12.61553 -11.84793 -11.69125 -11.64341 -11.11038 -11.07850 -10.95403 -10.78604 -10.77567 -10.76087 -10.34493 -10.22568 -10.05592 -9.76826 -9.09286 -8.91143 -8.43989 -7.95601 -6.10779 -4.15371 2.21073 2.46831 3.32022 3.35117 3.40180 3.50146 3.56652 4.11602 4.29777 4.39520 4.43487 4.63106 4.74990 4.88361 4.99714 5.12290 5.22088 5.22730 5.28829 5.36689 5.48980 5.68834 5.78431 5.91343 5.98468 6.53702 6.72853 6.79125 6.86539 7.02079 7.06912 7.37219 7.67809 7.84734 8.01803 8.17190 8.26106 8.92438 9.02378 9.50329 10.96751 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.044461 B = 0.003494 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.620385 B = 8012.638633 C = 8482.302643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.043 3.957 3 H 0.059 0.941 4 C -0.506 4.506 5 H 0.075 0.925 6 C 0.060 3.940 7 N -0.894 5.894 8 Si 0.905 3.095 9 H -0.287 1.287 10 H -0.276 1.276 11 H -0.276 1.276 12 C 0.522 3.478 13 O -0.546 6.546 14 N -0.541 5.541 15 N -0.521 5.521 16 C 0.512 3.488 17 O -0.544 6.544 18 C -0.099 4.099 19 C -0.152 4.152 20 C 0.063 3.937 21 O -0.383 6.383 22 C 0.061 3.939 23 C -0.135 4.135 24 H 0.015 0.985 25 H 0.034 0.966 26 H 0.097 0.903 27 H 0.263 0.737 28 H 0.427 0.573 29 H 0.427 0.573 30 H 0.102 0.898 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.054 0.946 34 H 0.099 0.901 35 H 0.052 0.948 36 H 0.098 0.902 37 H 0.082 0.918 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.498 -3.900 -19.093 19.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.020 3.980 3 H 0.077 0.923 4 C -0.544 4.544 5 H 0.093 0.907 6 C -0.141 4.141 7 N -0.533 5.533 8 Si 0.732 3.268 9 H -0.213 1.213 10 H -0.201 1.201 11 H -0.201 1.201 12 C 0.312 3.688 13 O -0.420 6.420 14 N -0.292 5.292 15 N -0.266 5.266 16 C 0.298 3.702 17 O -0.421 6.421 18 C -0.122 4.122 19 C -0.190 4.190 20 C -0.013 4.013 21 O -0.302 6.302 22 C -0.016 4.016 23 C -0.173 4.173 24 H 0.034 0.966 25 H 0.053 0.947 26 H 0.116 0.884 27 H 0.073 0.927 28 H 0.269 0.731 29 H 0.268 0.732 30 H 0.120 0.880 31 H 0.100 0.900 32 H 0.101 0.899 33 H 0.072 0.928 34 H 0.117 0.883 35 H 0.070 0.930 36 H 0.116 0.884 37 H 0.101 0.899 38 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 2.546 -3.712 -19.046 19.570 hybrid contribution 0.049 -0.567 1.133 1.268 sum 2.594 -4.280 -17.913 18.599 Atomic orbital electron populations 1.21811 0.96079 1.00154 1.01420 1.18894 0.94441 0.97023 0.87642 0.92318 1.21050 1.31633 1.13084 0.88673 0.90651 1.24953 0.94974 0.95031 0.99159 1.69859 1.36656 1.22865 1.23916 0.86445 0.79275 0.79659 0.81405 1.21293 1.20137 1.20124 1.22617 0.78784 0.84828 0.82538 1.90543 1.38425 1.26985 1.86022 1.45845 1.55117 1.31335 0.96950 1.44908 1.52474 1.30455 0.98755 1.20688 0.81106 0.85352 0.83101 1.90714 1.38604 1.26459 1.86294 1.21306 0.97083 1.01087 0.92690 1.22275 0.93325 1.03706 0.99713 1.22577 0.99274 0.94792 0.84696 1.87949 1.20463 1.75930 1.45815 1.22639 0.80876 0.99987 0.98082 1.22037 1.01780 1.01079 0.92407 0.96619 0.94722 0.88430 0.92692 0.73077 0.73202 0.88028 0.90011 0.89925 0.92755 0.88314 0.92987 0.88385 0.89890 0.89873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 8.87 37.16 0.33 -2.76 16 2 C 0.04 1.04 2.64 -92.93 -0.25 0.79 16 3 H 0.06 1.47 8.14 -51.93 -0.42 1.04 16 4 C -0.51 -13.94 8.37 -34.44 -0.29 -14.23 16 5 H 0.08 2.17 6.75 -52.49 -0.35 1.82 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 7 N -0.89 -24.60 11.32 55.43 0.63 -23.97 16 8 Si 0.90 21.33 29.54 -169.99 -5.02 16.30 16 9 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 12 C 0.52 11.56 7.26 -10.99 -0.08 11.48 16 13 O -0.55 -13.32 15.30 5.56 0.09 -13.23 16 14 N -0.54 -9.92 6.15 31.22 0.19 -9.72 16 15 N -0.52 -7.95 6.17 31.22 0.19 -7.76 16 16 C 0.51 7.15 7.27 -10.99 -0.08 7.08 16 17 O -0.54 -9.36 15.81 5.56 0.09 -9.28 16 18 C -0.10 -0.96 2.61 -91.58 -0.24 -1.20 16 19 C -0.15 -1.31 5.30 -26.59 -0.14 -1.45 16 20 C 0.06 0.48 6.84 37.21 0.25 0.74 16 21 O -0.38 -3.67 10.76 -35.23 -0.38 -4.05 16 22 C 0.06 0.47 6.84 37.21 0.25 0.73 16 23 C -0.13 -1.27 4.74 -26.59 -0.13 -1.39 16 24 H 0.01 0.29 7.57 -51.93 -0.39 -0.10 16 25 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 26 H 0.10 2.42 6.07 -51.93 -0.32 2.11 16 27 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 28 H 0.43 7.55 7.42 -182.59 -1.35 6.19 16 29 H 0.43 5.94 7.52 -182.60 -1.37 4.57 16 30 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.08 0.64 7.70 -51.93 -0.40 0.24 16 33 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.08 0.92 8.02 -51.93 -0.42 0.50 16 LS Contribution 315.05 15.07 4.75 4.75 Total: -1.00 -31.90 315.05 -7.47 -39.37 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -7.55 Total: 6.28 kcal Atomic # 6 Polarization: 1.76 SS G_CDS: -0.46 Total: 1.31 kcal Atomic # 7 Polarization: -42.47 SS G_CDS: 1.01 Total: -41.45 kcal Atomic # 8 Polarization: -26.35 SS G_CDS: -0.21 Total: -26.56 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -31.90 -7.47 -39.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119443816.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.908 kcal (2) G-P(sol) polarization free energy of solvation -31.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds