Wall clock time and date at job start Mon Mar 30 2020 02:22:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 C 1.50698 * 109.46939 * 240.00503 * 2 1 3 13 13 O 1.21280 * 119.99901 * 239.99860 * 12 2 1 14 14 N 1.34774 * 120.00338 * 59.99981 * 12 2 1 15 15 N 1.40105 * 120.00185 * 179.97438 * 14 12 2 16 16 C 1.34776 * 119.99586 * 179.97438 * 15 14 12 17 17 O 1.21280 * 120.00359 * 0.02562 * 16 15 14 18 18 C 1.50699 * 119.99365 * 180.02562 * 16 15 14 19 19 C 1.53181 * 109.54299 * 299.55379 * 18 16 15 20 20 C 1.53095 * 109.16117 * 183.15799 * 19 18 16 21 21 O 1.42896 * 109.41833 * 57.60929 * 20 19 18 22 22 C 1.42903 * 114.10061 * 298.84191 * 21 20 19 23 23 C 1.53092 * 109.41553 * 61.15595 * 22 21 20 24 24 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 25 25 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 27 27 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 28 28 H 0.97006 * 120.00251 * 0.02562 * 14 12 2 29 29 H 0.96997 * 119.99768 * 0.02562 * 15 14 12 30 30 H 1.08996 * 109.54652 * 59.82496 * 18 16 15 31 31 H 1.09001 * 109.52471 * 303.05805 * 19 18 16 32 32 H 1.08995 * 109.51997 * 63.25199 * 19 18 16 33 33 H 1.08999 * 109.47984 * 297.62284 * 20 19 18 34 34 H 1.09001 * 109.47755 * 177.59267 * 20 19 18 35 35 H 1.09005 * 109.47994 * 301.17480 * 22 21 20 36 36 H 1.08996 * 109.49161 * 181.14773 * 22 21 20 37 37 H 1.08999 * 109.52593 * 182.48723 * 23 22 21 38 38 H 1.09003 * 109.52250 * 62.29662 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 6 2.0323 -0.7103 -1.2305 13 8 2.7295 -1.6964 -1.1193 14 7 1.7067 -0.2498 -2.4546 15 7 2.1741 -0.9099 -3.5986 16 6 1.8481 -0.4496 -4.8226 17 8 1.1504 0.5363 -4.9338 18 6 2.3504 -1.1599 -6.0531 19 6 3.8822 -1.1506 -6.0607 20 6 4.3822 -1.8041 -7.3517 21 8 3.8464 -1.1046 -8.4767 22 6 2.4192 -1.1203 -8.5478 23 6 1.8402 -0.4394 -7.3049 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 0.7089 1.1611 3.4845 28 1 1.1493 0.5391 -2.5436 29 1 2.7318 -1.6985 -3.5096 30 1 1.9907 -2.1888 -6.0526 31 1 4.2405 -0.1224 -6.0105 32 1 4.2540 -1.7093 -5.2019 33 1 4.0576 -2.8441 -7.3821 34 1 5.4710 -1.7618 -7.3824 35 1 2.0689 -2.1515 -8.5938 36 1 2.0937 -0.5856 -9.4401 37 1 0.7518 -0.4894 -7.3358 38 1 2.1573 0.6032 -7.2797 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119443816.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:25 Heat of formation + Delta-G solvation = -126.558259 kcal Electronic energy + Delta-G solvation = -20791.783488 eV Core-core repulsion = 17441.021346 eV Total energy + Delta-G solvation = -3350.762142 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.69021 -40.52882 -39.42162 -36.44874 -35.83862 -34.90111 -33.12881 -32.09561 -31.26367 -27.25951 -26.91923 -24.72617 -24.40161 -22.73326 -21.91251 -20.80764 -19.04786 -18.63390 -18.15584 -17.28876 -16.98913 -16.93535 -16.58457 -16.33435 -15.77881 -15.72417 -15.32124 -14.96677 -14.62717 -14.55025 -14.26092 -13.58991 -13.32256 -13.00242 -12.78804 -12.65343 -12.59740 -12.42728 -12.31240 -12.20050 -12.04390 -11.75345 -11.54485 -11.19479 -11.10323 -10.78461 -10.53391 -10.41910 -9.41658 -8.17242 -6.28912 0.85668 1.26521 1.43998 1.44866 1.53695 1.79953 2.42911 2.92902 3.05985 3.13208 3.47974 3.63789 3.71771 3.99485 4.11726 4.25771 4.30367 4.48837 4.59734 4.65912 4.68135 4.78969 4.83850 4.86903 4.92939 5.05783 5.09697 5.24370 5.40530 5.60270 5.67549 5.72222 5.94266 6.15369 6.28155 6.56275 6.79706 6.86687 7.35212 7.44366 8.88740 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.044461 B = 0.003494 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.620385 B = 8012.638633 C = 8482.302643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.036 3.964 3 H 0.047 0.953 4 C -0.531 4.531 5 H 0.057 0.943 6 C 0.020 3.980 7 N -0.911 5.911 8 Si 0.960 3.040 9 H -0.277 1.277 10 H -0.274 1.274 11 H -0.275 1.275 12 C 0.528 3.472 13 O -0.572 6.572 14 N -0.532 5.532 15 N -0.518 5.518 16 C 0.514 3.486 17 O -0.576 6.576 18 C -0.091 4.091 19 C -0.150 4.150 20 C 0.063 3.937 21 O -0.403 6.403 22 C 0.063 3.937 23 C -0.133 4.133 24 H 0.046 0.954 25 H 0.029 0.971 26 H 0.075 0.925 27 H 0.266 0.734 28 H 0.432 0.568 29 H 0.434 0.566 30 H 0.132 0.868 31 H 0.063 0.937 32 H 0.093 0.907 33 H 0.075 0.925 34 H 0.109 0.891 35 H 0.073 0.927 36 H 0.109 0.891 37 H 0.083 0.917 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.687 -5.054 -20.266 21.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.014 3.986 3 H 0.065 0.935 4 C -0.569 4.569 5 H 0.075 0.925 6 C -0.179 4.179 7 N -0.550 5.550 8 Si 0.786 3.214 9 H -0.202 1.202 10 H -0.199 1.199 11 H -0.200 1.200 12 C 0.318 3.682 13 O -0.449 6.449 14 N -0.281 5.281 15 N -0.265 5.265 16 C 0.302 3.698 17 O -0.454 6.454 18 C -0.114 4.114 19 C -0.188 4.188 20 C -0.014 4.014 21 O -0.323 6.323 22 C -0.013 4.013 23 C -0.171 4.171 24 H 0.065 0.935 25 H 0.048 0.952 26 H 0.094 0.906 27 H 0.075 0.925 28 H 0.274 0.726 29 H 0.277 0.723 30 H 0.150 0.850 31 H 0.082 0.918 32 H 0.112 0.888 33 H 0.093 0.907 34 H 0.127 0.873 35 H 0.091 0.909 36 H 0.127 0.873 37 H 0.102 0.898 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.725 -4.850 -20.253 21.003 hybrid contribution -0.023 -0.153 1.405 1.414 sum 2.702 -5.003 -18.848 19.687 Atomic orbital electron populations 1.21631 0.94908 0.99881 1.01832 1.18791 0.95404 0.96222 0.88211 0.93484 1.21220 1.32115 1.13064 0.90519 0.92523 1.25628 0.95056 0.95684 1.01563 1.69948 1.36951 1.23516 1.24596 0.85575 0.78702 0.78693 0.78469 1.20228 1.19931 1.19991 1.21962 0.78681 0.84349 0.83255 1.90521 1.39723 1.28077 1.86594 1.45386 1.54164 1.31089 0.97492 1.45129 1.52885 1.30683 0.97805 1.21597 0.79934 0.84824 0.83405 1.90703 1.40042 1.28019 1.86677 1.21419 0.97859 1.01962 0.90113 1.22283 0.92265 1.03096 1.01136 1.22711 0.99943 0.95452 0.83264 1.87932 1.21352 1.76465 1.46503 1.22727 0.80085 1.01140 0.97376 1.22032 1.01901 1.00006 0.93195 0.93542 0.95205 0.90579 0.92459 0.72574 0.72304 0.85047 0.91795 0.88824 0.90652 0.87266 0.90859 0.87337 0.89840 0.92167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.62 8.87 71.98 0.64 -4.99 16 2 C 0.04 1.79 2.64 -12.29 -0.03 1.75 16 3 H 0.05 2.40 8.14 -2.39 -0.02 2.38 16 4 C -0.53 -29.66 8.37 25.60 0.21 -29.45 16 5 H 0.06 3.32 6.75 -2.91 -0.02 3.30 16 6 C 0.02 1.11 5.30 84.66 0.45 1.55 16 7 N -0.91 -50.30 11.32 21.45 0.24 -50.06 16 8 Si 0.96 43.66 29.54 68.60 2.03 45.68 16 9 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 10 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 11 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 12 C 0.53 23.38 7.26 87.66 0.64 24.02 16 13 O -0.57 -27.99 15.30 -3.03 -0.05 -28.04 16 14 N -0.53 -19.18 6.15 -173.54 -1.07 -20.24 16 15 N -0.52 -15.17 6.17 -173.53 -1.07 -16.24 16 16 C 0.51 13.71 7.27 87.66 0.64 14.35 16 17 O -0.58 -19.44 15.81 -3.03 -0.05 -19.49 16 18 C -0.09 -1.58 2.61 -11.42 -0.03 -1.61 16 19 C -0.15 -2.28 5.30 30.69 0.16 -2.12 16 20 C 0.06 0.78 6.84 72.01 0.49 1.27 16 21 O -0.40 -6.80 10.76 -148.98 -1.60 -8.41 16 22 C 0.06 0.82 6.84 72.01 0.49 1.31 16 23 C -0.13 -2.29 4.74 30.69 0.15 -2.14 16 24 H 0.05 1.75 7.57 -2.38 -0.02 1.74 16 25 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.08 3.79 6.07 -2.39 -0.01 3.78 16 27 H 0.27 13.96 8.31 -92.71 -0.77 13.19 16 28 H 0.43 14.96 7.42 -213.31 -1.58 13.38 16 29 H 0.43 11.43 7.52 -213.32 -1.60 9.82 16 30 H 0.13 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.09 1.23 7.70 -2.39 -0.02 1.21 16 33 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 36 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.06 1.31 8.02 -2.39 -0.02 1.29 16 Total: -1.00 -68.51 315.05 0.14 -68.37 By element: Atomic # 1 Polarization: 26.58 SS G_CDS: -2.10 Total: 24.47 kcal Atomic # 6 Polarization: 0.15 SS G_CDS: 3.81 Total: 3.96 kcal Atomic # 7 Polarization: -84.65 SS G_CDS: -1.90 Total: -86.54 kcal Atomic # 8 Polarization: -54.24 SS G_CDS: -1.70 Total: -55.94 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.68 kcal Total: -68.51 0.14 -68.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119443816.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.191 kcal (2) G-P(sol) polarization free energy of solvation -68.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds