Wall clock time and date at job start Mon Mar 30 2020 02:23:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47131 * 2 1 4 4 C 1.50702 * 109.47245 * 240.00111 * 2 1 3 5 5 H 1.08002 * 120.00299 * 240.00501 * 4 2 1 6 6 C 1.37884 * 119.99942 * 59.72060 * 4 2 1 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 2 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 2 9 9 H 1.48501 * 109.47188 * 90.00793 * 8 6 4 10 10 H 1.48501 * 109.47085 * 210.00372 * 8 6 4 11 11 H 1.48498 * 109.47634 * 330.00608 * 8 6 4 12 12 O 1.45202 * 109.47304 * 120.00214 * 2 1 3 13 13 C 1.34229 * 116.99647 * 270.00311 * 12 2 1 14 14 O 1.20823 * 120.00153 * 359.97438 * 13 12 2 15 15 C 1.50701 * 119.99800 * 179.97438 * 13 12 2 16 16 N 1.46494 * 109.47028 * 179.97438 * 15 13 12 17 17 C 1.34782 * 119.99880 * 179.97438 * 16 15 13 18 18 O 1.21591 * 120.00110 * 0.02562 * 17 16 15 19 19 N 1.34776 * 120.00065 * 180.02562 * 17 16 15 20 20 C 1.47024 * 125.64627 * 359.69903 * 19 17 16 21 21 C 1.54318 * 107.27413 * 180.96808 * 20 19 17 22 22 C 1.55160 * 102.86358 * 22.52378 * 21 20 19 23 23 C 1.47418 * 125.64814 * 180.02562 * 19 17 16 24 24 H 1.09004 * 109.47084 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47175 * 300.00017 * 1 2 3 26 26 H 1.09001 * 109.47192 * 59.99988 * 1 2 3 27 27 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 28 28 H 1.09002 * 109.46807 * 299.99941 * 15 13 12 29 29 H 1.09001 * 109.47125 * 59.99834 * 15 13 12 30 30 H 0.96991 * 120.00526 * 0.02562 * 16 15 13 31 31 H 1.09004 * 109.88435 * 300.50795 * 20 19 17 32 32 H 1.08994 * 109.88512 * 61.67509 * 20 19 17 33 33 H 1.09002 * 110.92472 * 264.10990 * 21 20 19 34 34 H 1.08996 * 110.59064 * 140.78681 * 21 20 19 35 35 H 1.09001 * 111.00270 * 206.22997 * 22 21 20 36 36 H 1.08999 * 111.00424 * 82.37765 * 22 21 20 37 37 H 1.08997 * 110.36983 * 274.67502 * 23 19 17 38 38 H 1.09007 * 110.36951 * 36.89150 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6945 -0.2426 -2.4828 7 7 0.9385 0.8267 -2.6034 8 14 2.3109 -1.1277 -4.0079 9 1 1.3307 -2.1700 -4.4055 10 1 2.4720 -0.1516 -5.1155 11 1 3.6199 -1.7650 -3.7155 12 8 2.0140 -0.6845 1.1855 13 6 2.2171 0.0640 2.2811 14 8 1.9981 1.2518 2.2503 15 6 2.7182 -0.5772 3.5495 16 7 2.8573 0.4437 4.5908 17 6 3.2933 0.0988 5.8187 18 8 3.5717 -1.0595 6.0619 19 7 3.4208 1.0380 6.7769 20 6 3.1267 2.4697 6.6179 21 6 3.4414 3.1544 7.9646 22 6 4.4379 2.1681 8.6291 23 6 3.8846 0.8009 8.1560 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 0.7011 1.1560 -3.4844 28 1 2.0087 -1.3370 3.8773 29 1 3.6871 -1.0409 3.3639 30 1 2.6349 1.3676 4.3970 31 1 3.7516 2.8914 5.8306 32 1 2.0738 2.6068 6.3717 33 1 2.5401 3.2575 8.5689 34 1 3.9103 4.1247 7.8010 35 1 4.4023 2.2494 9.7155 36 1 5.4509 2.3282 8.2598 37 1 3.0528 0.4894 8.7877 38 1 4.6717 0.0468 8.1672 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001122622250.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:41 Heat of formation + Delta-G solvation = -116.764669 kcal Electronic energy + Delta-G solvation = -20537.551537 eV Core-core repulsion = 17187.214077 eV Total energy + Delta-G solvation = -3350.337460 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.45379 -39.56993 -37.67382 -36.03176 -34.33345 -33.33180 -31.84555 -29.84332 -29.29984 -27.61375 -25.36316 -23.72419 -21.86596 -21.41749 -20.08649 -19.82490 -18.51994 -16.93420 -16.74942 -16.65113 -15.86399 -15.71459 -15.40424 -14.74215 -14.68662 -13.89851 -13.85911 -13.54471 -13.21569 -12.98467 -12.75412 -12.48310 -12.11803 -11.83666 -11.67319 -11.54083 -11.27364 -11.11924 -11.09709 -10.88646 -10.45175 -10.33468 -10.27432 -9.85957 -9.64125 -9.24345 -8.97975 -8.68494 -8.53934 -6.23004 -4.30117 2.36077 2.77870 3.12960 3.23058 3.28253 3.31689 3.48457 3.95203 4.25911 4.30252 4.34174 4.57976 4.95122 5.06283 5.10232 5.30332 5.39080 5.44570 5.48321 5.51889 5.53536 5.56679 5.65084 5.81680 6.04893 6.33487 6.56404 6.82552 6.83281 6.91307 7.05866 7.52950 7.65455 7.84143 7.85892 8.06943 8.45602 8.52801 8.80242 9.35459 10.84414 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.042826 B = 0.003244 C = 0.003148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.653482 B = 8630.305393 C = 8892.436014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.216 3.784 3 H 0.048 0.952 4 C -0.523 4.523 5 H 0.070 0.930 6 C 0.063 3.937 7 N -0.889 5.889 8 Si 0.914 3.086 9 H -0.277 1.277 10 H -0.284 1.284 11 H -0.271 1.271 12 O -0.349 6.349 13 C 0.451 3.549 14 O -0.522 6.522 15 C 0.143 3.857 16 N -0.733 5.733 17 C 0.727 3.273 18 O -0.590 6.590 19 N -0.638 5.638 20 C 0.095 3.905 21 C -0.129 4.129 22 C -0.135 4.135 23 C 0.125 3.875 24 H 0.038 0.962 25 H 0.016 0.984 26 H 0.101 0.899 27 H 0.267 0.733 28 H 0.106 0.894 29 H 0.107 0.893 30 H 0.408 0.592 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.065 0.935 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.161 4.225 19.438 20.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.164 3.836 3 H 0.066 0.934 4 C -0.561 4.561 5 H 0.089 0.911 6 C -0.140 4.140 7 N -0.527 5.527 8 Si 0.740 3.260 9 H -0.203 1.203 10 H -0.210 1.210 11 H -0.196 1.196 12 O -0.264 6.264 13 C 0.293 3.707 14 O -0.413 6.413 15 C 0.017 3.983 16 N -0.393 5.393 17 C 0.429 3.571 18 O -0.468 6.468 19 N -0.377 5.377 20 C -0.029 4.029 21 C -0.167 4.167 22 C -0.173 4.173 23 C 0.002 3.998 24 H 0.057 0.943 25 H 0.035 0.965 26 H 0.119 0.881 27 H 0.077 0.923 28 H 0.124 0.876 29 H 0.125 0.875 30 H 0.245 0.755 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.101 0.899 35 H 0.103 0.897 36 H 0.095 0.905 37 H 0.084 0.916 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 4.175 3.759 19.293 20.094 hybrid contribution -0.011 0.266 -1.050 1.083 sum 4.164 4.025 18.243 19.140 Atomic orbital electron populations 1.22178 0.97379 1.00299 1.01497 1.20723 0.91496 0.93961 0.77459 0.93393 1.21037 1.32581 1.13670 0.88781 0.91142 1.24895 0.94870 0.95093 0.99117 1.69896 1.35989 1.22562 1.24268 0.86240 0.79342 0.79131 0.81242 1.20304 1.20965 1.19556 1.86490 1.75405 1.43411 1.21099 1.23150 0.75029 0.86018 0.86478 1.90581 1.49234 1.16894 1.84557 1.20476 1.04053 0.90263 0.83473 1.44808 1.71795 1.12815 1.09852 1.15222 0.78455 0.83879 0.79559 1.90935 1.57721 1.17084 1.81062 1.47515 1.70988 1.07454 1.11784 1.22059 1.01091 0.80917 0.98788 1.22604 0.99983 0.98845 0.95289 1.22813 0.99397 0.94134 1.00951 1.22066 0.99073 0.97695 0.80984 0.94266 0.96490 0.88097 0.92343 0.87598 0.87522 0.75481 0.91283 0.91312 0.90383 0.89866 0.89667 0.90484 0.91640 0.90279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.89 9.32 37.16 0.35 -3.54 16 2 C 0.22 5.70 2.56 -27.88 -0.07 5.63 16 3 H 0.05 1.38 7.16 -51.93 -0.37 1.01 16 4 C -0.52 -14.54 8.90 -34.44 -0.31 -14.84 16 5 H 0.07 1.93 7.81 -52.49 -0.41 1.52 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -24.97 11.31 55.43 0.63 -24.34 16 8 Si 0.91 20.93 29.54 -169.99 -5.02 15.91 16 9 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 12 O -0.35 -8.11 9.86 -39.26 -0.39 -8.50 16 13 C 0.45 9.02 8.00 36.01 0.29 9.31 16 14 O -0.52 -11.43 14.89 -18.75 -0.28 -11.71 16 15 C 0.14 2.26 6.27 -5.20 -0.03 2.23 16 16 N -0.73 -10.87 5.49 -66.41 -0.36 -11.23 16 17 C 0.73 11.00 8.49 -86.91 -0.74 10.26 16 18 O -0.59 -10.78 16.60 5.29 0.09 -10.69 16 19 N -0.64 -7.44 3.33 -176.25 -0.59 -8.02 16 20 C 0.09 0.83 6.14 -3.07 -0.02 0.81 16 21 C -0.13 -0.77 6.95 -24.90 -0.17 -0.94 16 22 C -0.13 -0.82 7.08 -24.59 -0.17 -0.99 16 23 C 0.12 1.15 6.91 -2.54 -0.02 1.13 16 24 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.10 2.69 6.06 -51.93 -0.31 2.38 16 27 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 28 H 0.11 1.56 8.14 -51.93 -0.42 1.14 16 29 H 0.11 1.60 8.14 -51.93 -0.42 1.18 16 30 H 0.41 5.80 6.43 -40.82 -0.26 5.54 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.08 0.80 8.03 -51.92 -0.42 0.38 16 LS Contribution 321.61 15.07 4.85 4.85 Total: -1.00 -32.29 321.61 -7.63 -39.92 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -5.56 Total: 3.17 kcal Atomic # 6 Polarization: 11.64 SS G_CDS: -0.99 Total: 10.65 kcal Atomic # 7 Polarization: -43.27 SS G_CDS: -0.32 Total: -43.60 kcal Atomic # 8 Polarization: -30.32 SS G_CDS: -0.58 Total: -30.90 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -32.29 -7.63 -39.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122622250.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.847 kcal (2) G-P(sol) polarization free energy of solvation -32.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds