Wall clock time and date at job start Mon Mar 30 2020 02:23:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47131 * 2 1 4 4 C 1.50702 * 109.47245 * 240.00111 * 2 1 3 5 5 H 1.08002 * 120.00299 * 240.00501 * 4 2 1 6 6 C 1.37884 * 119.99942 * 59.72060 * 4 2 1 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 2 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 2 9 9 H 1.48501 * 109.47188 * 90.00793 * 8 6 4 10 10 H 1.48501 * 109.47085 * 210.00372 * 8 6 4 11 11 H 1.48498 * 109.47634 * 330.00608 * 8 6 4 12 12 O 1.45202 * 109.47304 * 120.00214 * 2 1 3 13 13 C 1.34229 * 116.99647 * 270.00311 * 12 2 1 14 14 O 1.20823 * 120.00153 * 359.97438 * 13 12 2 15 15 C 1.50701 * 119.99800 * 179.97438 * 13 12 2 16 16 N 1.46494 * 109.47028 * 179.97438 * 15 13 12 17 17 C 1.34782 * 119.99880 * 179.97438 * 16 15 13 18 18 O 1.21591 * 120.00110 * 0.02562 * 17 16 15 19 19 N 1.34776 * 120.00065 * 180.02562 * 17 16 15 20 20 C 1.47024 * 125.64627 * 359.69903 * 19 17 16 21 21 C 1.54318 * 107.27413 * 180.96808 * 20 19 17 22 22 C 1.55160 * 102.86358 * 22.52378 * 21 20 19 23 23 C 1.47418 * 125.64814 * 180.02562 * 19 17 16 24 24 H 1.09004 * 109.47084 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47175 * 300.00017 * 1 2 3 26 26 H 1.09001 * 109.47192 * 59.99988 * 1 2 3 27 27 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 28 28 H 1.09002 * 109.46807 * 299.99941 * 15 13 12 29 29 H 1.09001 * 109.47125 * 59.99834 * 15 13 12 30 30 H 0.96991 * 120.00526 * 0.02562 * 16 15 13 31 31 H 1.09004 * 109.88435 * 300.50795 * 20 19 17 32 32 H 1.08994 * 109.88512 * 61.67509 * 20 19 17 33 33 H 1.09002 * 110.92472 * 264.10990 * 21 20 19 34 34 H 1.08996 * 110.59064 * 140.78681 * 21 20 19 35 35 H 1.09001 * 111.00270 * 206.22997 * 22 21 20 36 36 H 1.08999 * 111.00424 * 82.37765 * 22 21 20 37 37 H 1.08997 * 110.36983 * 274.67502 * 23 19 17 38 38 H 1.09007 * 110.36951 * 36.89150 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6945 -0.2426 -2.4828 7 7 0.9385 0.8267 -2.6034 8 14 2.3109 -1.1277 -4.0079 9 1 1.3307 -2.1700 -4.4055 10 1 2.4720 -0.1516 -5.1155 11 1 3.6199 -1.7650 -3.7155 12 8 2.0140 -0.6845 1.1855 13 6 2.2171 0.0640 2.2811 14 8 1.9981 1.2518 2.2503 15 6 2.7182 -0.5772 3.5495 16 7 2.8573 0.4437 4.5908 17 6 3.2933 0.0988 5.8187 18 8 3.5717 -1.0595 6.0619 19 7 3.4208 1.0380 6.7769 20 6 3.1267 2.4697 6.6179 21 6 3.4414 3.1544 7.9646 22 6 4.4379 2.1681 8.6291 23 6 3.8846 0.8009 8.1560 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 0.7011 1.1560 -3.4844 28 1 2.0087 -1.3370 3.8773 29 1 3.6871 -1.0409 3.3639 30 1 2.6349 1.3676 4.3970 31 1 3.7516 2.8914 5.8306 32 1 2.0738 2.6068 6.3717 33 1 2.5401 3.2575 8.5689 34 1 3.9103 4.1247 7.8010 35 1 4.4023 2.2494 9.7155 36 1 5.4509 2.3282 8.2598 37 1 3.0528 0.4894 8.7877 38 1 4.6717 0.0468 8.1672 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001122622250.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:40 Heat of formation + Delta-G solvation = -137.748829 kcal Electronic energy + Delta-G solvation = -20538.461478 eV Core-core repulsion = 17187.214077 eV Total energy + Delta-G solvation = -3351.247401 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.75003 -41.04351 -38.61654 -37.79069 -35.66661 -35.37077 -32.72567 -31.77695 -30.06070 -28.90591 -27.46082 -24.71027 -23.54791 -22.07758 -21.57639 -21.17068 -19.66407 -18.75096 -18.34713 -17.76752 -17.27928 -17.12379 -16.97317 -16.37035 -15.89047 -15.32845 -14.73598 -14.63240 -14.48720 -14.15113 -14.05591 -13.79982 -13.70820 -13.26372 -13.16521 -13.01560 -12.81215 -12.41718 -12.20977 -12.18010 -12.13953 -11.66235 -11.59080 -11.57062 -11.49769 -11.03204 -10.61332 -10.47528 -9.61560 -8.30433 -6.47031 1.13113 1.19568 1.43385 1.44290 1.56082 1.95945 2.01341 2.39801 2.88164 3.00723 3.66001 3.67642 3.77254 4.07212 4.21020 4.26496 4.30737 4.48876 4.50367 4.63173 4.76680 4.79935 4.86241 4.92551 4.99452 5.04519 5.12263 5.16955 5.23921 5.36282 5.46726 5.60295 5.85669 5.89880 6.02180 6.55122 6.74610 6.83326 7.24132 7.34759 8.77121 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.042826 B = 0.003244 C = 0.003148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.653482 B = 8630.305393 C = 8892.436014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.218 3.782 3 H 0.014 0.986 4 C -0.551 4.551 5 H 0.068 0.932 6 C 0.018 3.982 7 N -0.916 5.916 8 Si 0.983 3.017 9 H -0.268 1.268 10 H -0.277 1.277 11 H -0.266 1.266 12 O -0.356 6.356 13 C 0.451 3.549 14 O -0.541 6.541 15 C 0.157 3.843 16 N -0.732 5.732 17 C 0.722 3.278 18 O -0.626 6.626 19 N -0.638 5.638 20 C 0.085 3.915 21 C -0.121 4.121 22 C -0.124 4.124 23 C 0.115 3.885 24 H 0.046 0.954 25 H 0.027 0.973 26 H 0.082 0.918 27 H 0.271 0.729 28 H 0.122 0.878 29 H 0.119 0.881 30 H 0.411 0.589 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.090 0.910 34 H 0.100 0.900 35 H 0.110 0.890 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.583 4.418 20.308 21.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.165 3.835 3 H 0.032 0.968 4 C -0.589 4.589 5 H 0.086 0.914 6 C -0.182 4.182 7 N -0.553 5.553 8 Si 0.806 3.194 9 H -0.193 1.193 10 H -0.203 1.203 11 H -0.190 1.190 12 O -0.272 6.272 13 C 0.296 3.704 14 O -0.433 6.433 15 C 0.031 3.969 16 N -0.391 5.391 17 C 0.424 3.576 18 O -0.508 6.508 19 N -0.376 5.376 20 C -0.037 4.037 21 C -0.158 4.158 22 C -0.161 4.161 23 C -0.008 4.008 24 H 0.065 0.935 25 H 0.046 0.954 26 H 0.101 0.899 27 H 0.081 0.919 28 H 0.139 0.861 29 H 0.136 0.864 30 H 0.249 0.751 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.108 0.892 34 H 0.119 0.881 35 H 0.129 0.871 36 H 0.095 0.905 37 H 0.090 0.910 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.596 3.992 20.209 21.106 hybrid contribution -0.140 0.275 -1.230 1.268 sum 4.456 4.267 18.979 19.957 Atomic orbital electron populations 1.22007 0.96537 1.00565 1.01073 1.20439 0.92141 0.92285 0.78643 0.96781 1.21318 1.33497 1.14107 0.89938 0.91369 1.25805 0.94669 0.95670 1.02074 1.70005 1.36449 1.23587 1.25289 0.85181 0.79009 0.78111 0.77119 1.19267 1.20263 1.19021 1.86470 1.75885 1.43536 1.21280 1.23875 0.74135 0.85775 0.86658 1.90569 1.49999 1.17884 1.84825 1.20433 1.04713 0.90281 0.81467 1.44744 1.71991 1.12655 1.09741 1.15367 0.78368 0.84008 0.79872 1.90902 1.59403 1.18769 1.81705 1.47683 1.69779 1.08171 1.11918 1.22312 1.01208 0.79396 1.00788 1.22627 1.00611 0.99107 0.93481 1.22803 0.99132 0.91806 1.02407 1.22322 0.99078 0.99480 0.79872 0.93523 0.95422 0.89921 0.91927 0.86064 0.86351 0.75148 0.91374 0.91210 0.89158 0.88104 0.87140 0.90501 0.90970 0.91675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.26 9.32 71.98 0.67 -6.59 16 2 C 0.22 11.73 2.56 29.85 0.08 11.80 16 3 H 0.01 0.86 7.16 -2.38 -0.02 0.84 16 4 C -0.55 -30.93 8.90 25.60 0.23 -30.71 16 5 H 0.07 3.76 7.81 -2.91 -0.02 3.73 16 6 C 0.02 0.97 5.30 84.66 0.45 1.42 16 7 N -0.92 -51.74 11.31 21.45 0.24 -51.50 16 8 Si 0.98 42.47 29.54 68.60 2.03 44.50 16 9 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 10 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 11 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 12 O -0.36 -16.70 9.86 -51.41 -0.51 -17.21 16 13 C 0.45 18.12 8.00 71.24 0.57 18.69 16 14 O -0.54 -23.99 14.89 21.97 0.33 -23.66 16 15 C 0.16 4.86 6.27 85.63 0.54 5.40 16 16 N -0.73 -21.35 5.49 -482.29 -2.65 -23.99 16 17 C 0.72 21.56 8.49 179.05 1.52 23.08 16 18 O -0.63 -22.85 16.60 -4.00 -0.07 -22.92 16 19 N -0.64 -14.29 3.33 -829.80 -2.76 -17.05 16 20 C 0.09 1.36 6.14 86.73 0.53 1.89 16 21 C -0.12 -1.09 6.95 31.78 0.22 -0.87 16 22 C -0.12 -1.18 7.08 31.98 0.23 -0.95 16 23 C 0.11 1.96 6.91 86.85 0.60 2.56 16 24 H 0.05 2.22 8.14 -2.38 -0.02 2.20 16 25 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.08 4.48 6.06 -2.39 -0.01 4.46 16 27 H 0.27 14.33 8.31 -92.70 -0.77 13.56 16 28 H 0.12 3.46 8.14 -2.39 -0.02 3.44 16 29 H 0.12 3.46 8.14 -2.39 -0.02 3.45 16 30 H 0.41 11.55 6.43 -92.71 -0.60 10.95 16 31 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 32 H 0.07 1.10 8.14 -2.39 -0.02 1.09 16 33 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.06 1.29 8.03 -2.38 -0.02 1.28 16 Total: -1.00 -69.67 321.61 2.71 -66.96 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: 0.47 Total: 19.15 kcal Atomic # 6 Polarization: 20.09 SS G_CDS: 5.63 Total: 25.72 kcal Atomic # 7 Polarization: -87.38 SS G_CDS: -5.16 Total: -92.54 kcal Atomic # 8 Polarization: -63.54 SS G_CDS: -0.25 Total: -63.78 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.50 kcal Total: -69.67 2.71 -66.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122622250.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.792 kcal (2) G-P(sol) polarization free energy of solvation -69.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds