Wall clock time and date at job start Mon Mar 30 2020 02:23:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47387 * 2 1 4 4 C 1.50696 * 109.46974 * 119.99758 * 2 1 3 5 5 H 1.08002 * 120.00714 * 120.00304 * 4 2 1 6 6 C 1.37884 * 120.00233 * 299.99974 * 4 2 1 7 7 N 1.31519 * 119.99545 * 359.97438 * 6 4 2 8 8 Si 1.86793 * 120.00397 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.47237 * 59.99955 * 8 6 4 10 10 H 1.48502 * 109.47378 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47045 * 299.99972 * 8 6 4 12 12 O 1.45203 * 109.47422 * 239.99724 * 2 1 3 13 13 C 1.34223 * 117.00342 * 90.00019 * 12 2 1 14 14 O 1.20833 * 119.99818 * 359.97438 * 13 12 2 15 15 C 1.50693 * 120.00106 * 180.02562 * 13 12 2 16 16 N 1.46509 * 109.47014 * 180.02562 * 15 13 12 17 17 C 1.34779 * 119.99795 * 180.02562 * 16 15 13 18 18 O 1.21578 * 120.00186 * 359.97438 * 17 16 15 19 19 N 1.34780 * 119.99572 * 179.97438 * 17 16 15 20 20 C 1.47024 * 125.64847 * 359.68614 * 19 17 16 21 21 C 1.54327 * 107.26851 * 181.32598 * 20 19 17 22 22 C 1.55154 * 102.94372 * 22.19158 * 21 20 19 23 23 C 1.47426 * 125.64645 * 179.97438 * 19 17 16 24 24 H 1.08992 * 109.47439 * 300.00235 * 1 2 3 25 25 H 1.08998 * 109.46942 * 60.00828 * 1 2 3 26 26 H 1.09004 * 109.47167 * 180.02562 * 1 2 3 27 27 H 0.97002 * 119.99984 * 179.97438 * 7 6 4 28 28 H 1.08999 * 109.47855 * 59.99945 * 15 13 12 29 29 H 1.08995 * 109.46982 * 299.99222 * 15 13 12 30 30 H 0.97004 * 119.99661 * 359.97438 * 16 15 13 31 31 H 1.08997 * 109.88062 * 300.74548 * 20 19 17 32 32 H 1.09000 * 109.88248 * 61.90735 * 20 19 17 33 33 H 1.09005 * 110.71834 * 263.82776 * 21 20 19 34 34 H 1.08999 * 110.71553 * 140.55738 * 21 20 19 35 35 H 1.09000 * 111.00849 * 206.42090 * 22 21 20 36 36 H 1.09001 * 111.00585 * 82.56882 * 22 21 20 37 37 H 1.09004 * 110.36499 * 274.44757 * 23 19 17 38 38 H 1.08998 * 110.36482 * 36.65820 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1316 6 6 1.6992 -0.2392 2.4828 7 7 0.9435 0.8304 2.6033 8 14 2.3224 -1.1193 4.0080 9 1 3.8074 -1.1187 4.0079 10 1 1.8278 -0.4189 5.2205 11 1 1.8279 -2.5196 4.0083 12 8 2.0141 -0.6845 -1.1855 13 6 2.2173 0.0638 -2.2811 14 8 1.9974 1.2516 -2.2507 15 6 2.7184 -0.5775 -3.5493 16 7 2.8576 0.4435 -4.5908 17 6 3.2936 0.0985 -5.8186 18 8 3.5719 -1.0597 -6.0617 19 7 3.4212 1.0377 -6.7768 20 6 3.1151 2.4673 -6.6216 21 6 3.3792 3.1429 -7.9838 22 6 3.2774 1.9608 -8.9836 23 6 3.8851 0.8006 -8.1560 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 0.7088 1.1616 3.4843 28 1 2.0090 -1.3372 -3.8773 29 1 3.6873 -1.0410 -3.3638 30 1 2.6352 1.3676 -4.3969 31 1 2.0694 2.5942 -6.3414 32 1 3.7608 2.9041 -5.8598 33 1 4.3755 3.5843 -8.0086 34 1 2.6181 3.8939 -8.1957 35 1 3.8690 2.1538 -9.8785 36 1 2.2384 1.7550 -9.2409 37 1 4.9738 0.8320 -8.2007 38 1 3.5187 -0.1594 -8.5196 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001122622251.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:44 Heat of formation + Delta-G solvation = -116.759235 kcal Electronic energy + Delta-G solvation = -20537.353453 eV Core-core repulsion = 17187.016228 eV Total energy + Delta-G solvation = -3350.337224 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.45348 -39.56893 -37.67260 -36.03094 -34.33283 -33.32926 -31.84453 -29.84472 -29.29909 -27.61483 -25.36181 -23.72585 -21.86516 -21.41686 -20.08611 -19.82442 -18.51983 -16.96073 -16.70240 -16.63251 -16.02905 -15.54676 -15.40400 -14.79837 -14.67983 -13.90076 -13.86224 -13.50401 -13.25191 -12.95472 -12.77837 -12.47624 -12.11364 -11.83390 -11.67749 -11.54079 -11.27564 -11.10000 -11.09586 -10.89961 -10.45863 -10.33641 -10.27539 -9.85902 -9.64054 -9.24370 -8.98716 -8.68498 -8.53522 -6.22763 -4.30026 2.36080 2.77843 3.13018 3.24885 3.28088 3.30079 3.48249 3.95163 4.25976 4.30324 4.34037 4.57918 4.95165 5.06185 5.10378 5.30412 5.39001 5.44578 5.48278 5.51872 5.53758 5.56480 5.65078 5.81507 6.04939 6.33428 6.56428 6.82566 6.83298 6.91310 7.05898 7.52874 7.65526 7.84075 7.85887 8.07005 8.45631 8.52814 8.80042 9.35502 10.84639 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.044051 B = 0.003242 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.472051 B = 8635.485775 C = 8926.431249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.216 3.784 3 H 0.048 0.952 4 C -0.524 4.524 5 H 0.070 0.930 6 C 0.063 3.937 7 N -0.890 5.890 8 Si 0.914 3.086 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.273 1.273 12 O -0.349 6.349 13 C 0.451 3.549 14 O -0.522 6.522 15 C 0.143 3.857 16 N -0.733 5.733 17 C 0.727 3.273 18 O -0.590 6.590 19 N -0.638 5.638 20 C 0.095 3.905 21 C -0.129 4.129 22 C -0.135 4.135 23 C 0.125 3.875 24 H 0.100 0.900 25 H 0.016 0.984 26 H 0.038 0.962 27 H 0.267 0.733 28 H 0.106 0.894 29 H 0.107 0.893 30 H 0.408 0.592 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.066 0.934 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.570 4.120 -19.605 20.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.164 3.836 3 H 0.066 0.934 4 C -0.562 4.562 5 H 0.088 0.912 6 C -0.139 4.139 7 N -0.527 5.527 8 Si 0.741 3.259 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.199 1.199 12 O -0.264 6.264 13 C 0.293 3.707 14 O -0.413 6.413 15 C 0.017 3.983 16 N -0.393 5.393 17 C 0.429 3.571 18 O -0.468 6.468 19 N -0.378 5.378 20 C -0.029 4.029 21 C -0.167 4.167 22 C -0.173 4.173 23 C 0.002 3.998 24 H 0.119 0.881 25 H 0.035 0.965 26 H 0.057 0.943 27 H 0.077 0.923 28 H 0.124 0.876 29 H 0.125 0.875 30 H 0.245 0.755 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.101 0.899 35 H 0.103 0.897 36 H 0.095 0.905 37 H 0.084 0.916 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.589 3.658 -19.454 20.118 hybrid contribution 0.052 0.275 1.058 1.094 sum 3.642 3.932 -18.396 19.161 Atomic orbital electron populations 1.22174 0.97375 1.00299 1.01477 1.20714 0.91499 0.93944 0.77440 0.93401 1.20996 1.32731 1.13631 0.88800 0.91191 1.24893 0.94866 0.95083 0.99103 1.69888 1.35961 1.22497 1.24385 0.86296 0.79241 0.79548 0.80842 1.19940 1.21020 1.19864 1.86487 1.75399 1.43417 1.21104 1.23149 0.75034 0.86018 0.86476 1.90584 1.49230 1.16900 1.84561 1.20475 1.04055 0.90261 0.83471 1.44815 1.71793 1.12820 1.09851 1.15218 0.78415 0.83843 0.79631 1.90932 1.57776 1.17093 1.80996 1.47519 1.70737 1.07558 1.11936 1.22060 1.01095 0.80985 0.98714 1.22604 1.02966 0.97703 0.93450 1.22815 1.02060 0.94539 0.97865 1.22075 0.98718 0.99333 0.79700 0.88121 0.96490 0.94257 0.92281 0.87598 0.87520 0.75477 0.91327 0.91273 0.90399 0.89860 0.89666 0.90496 0.91623 0.90275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.88 9.33 37.16 0.35 -3.53 16 2 C 0.22 5.71 2.56 -27.89 -0.07 5.64 16 3 H 0.05 1.38 7.16 -51.93 -0.37 1.01 16 4 C -0.52 -14.57 8.90 -34.44 -0.31 -14.88 16 5 H 0.07 1.91 7.81 -52.49 -0.41 1.50 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -24.99 11.32 55.43 0.63 -24.36 16 8 Si 0.91 20.94 29.54 -169.99 -5.02 15.92 16 9 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 10 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 12 O -0.35 -8.11 9.86 -39.24 -0.39 -8.50 16 13 C 0.45 9.03 8.00 36.00 0.29 9.31 16 14 O -0.52 -11.44 14.89 -18.76 -0.28 -11.72 16 15 C 0.14 2.26 6.27 -5.19 -0.03 2.23 16 16 N -0.73 -10.87 5.49 -66.41 -0.36 -11.23 16 17 C 0.73 11.00 8.49 -86.91 -0.74 10.26 16 18 O -0.59 -10.78 16.59 5.30 0.09 -10.69 16 19 N -0.64 -7.44 3.33 -176.22 -0.59 -8.03 16 20 C 0.09 0.83 6.15 -3.06 -0.02 0.81 16 21 C -0.13 -0.77 6.95 -24.90 -0.17 -0.94 16 22 C -0.13 -0.82 7.09 -24.57 -0.17 -0.99 16 23 C 0.12 1.15 6.91 -2.52 -0.02 1.13 16 24 H 0.10 2.68 6.07 -51.93 -0.32 2.37 16 25 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 28 H 0.11 1.56 8.14 -51.93 -0.42 1.14 16 29 H 0.11 1.60 8.14 -51.93 -0.42 1.18 16 30 H 0.41 5.81 6.43 -40.82 -0.26 5.54 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.08 0.80 8.03 -51.93 -0.42 0.38 16 LS Contribution 321.63 15.07 4.85 4.85 Total: -1.00 -32.28 321.63 -7.63 -39.91 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -5.56 Total: 3.20 kcal Atomic # 6 Polarization: 11.65 SS G_CDS: -0.99 Total: 10.66 kcal Atomic # 7 Polarization: -43.30 SS G_CDS: -0.32 Total: -43.62 kcal Atomic # 8 Polarization: -30.33 SS G_CDS: -0.58 Total: -30.90 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -32.28 -7.63 -39.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122622251.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.852 kcal (2) G-P(sol) polarization free energy of solvation -32.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds