Wall clock time and date at job start Mon Mar 30 2020 02:23:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47387 * 2 1 4 4 C 1.50696 * 109.46974 * 119.99758 * 2 1 3 5 5 H 1.08002 * 120.00714 * 120.00304 * 4 2 1 6 6 C 1.37884 * 120.00233 * 299.99974 * 4 2 1 7 7 N 1.31519 * 119.99545 * 359.97438 * 6 4 2 8 8 Si 1.86793 * 120.00397 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.47237 * 59.99955 * 8 6 4 10 10 H 1.48502 * 109.47378 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47045 * 299.99972 * 8 6 4 12 12 O 1.45203 * 109.47422 * 239.99724 * 2 1 3 13 13 C 1.34223 * 117.00342 * 90.00019 * 12 2 1 14 14 O 1.20833 * 119.99818 * 359.97438 * 13 12 2 15 15 C 1.50693 * 120.00106 * 180.02562 * 13 12 2 16 16 N 1.46509 * 109.47014 * 180.02562 * 15 13 12 17 17 C 1.34779 * 119.99795 * 180.02562 * 16 15 13 18 18 O 1.21578 * 120.00186 * 359.97438 * 17 16 15 19 19 N 1.34780 * 119.99572 * 179.97438 * 17 16 15 20 20 C 1.47024 * 125.64847 * 359.68614 * 19 17 16 21 21 C 1.54327 * 107.26851 * 181.32598 * 20 19 17 22 22 C 1.55154 * 102.94372 * 22.19158 * 21 20 19 23 23 C 1.47426 * 125.64645 * 179.97438 * 19 17 16 24 24 H 1.08992 * 109.47439 * 300.00235 * 1 2 3 25 25 H 1.08998 * 109.46942 * 60.00828 * 1 2 3 26 26 H 1.09004 * 109.47167 * 180.02562 * 1 2 3 27 27 H 0.97002 * 119.99984 * 179.97438 * 7 6 4 28 28 H 1.08999 * 109.47855 * 59.99945 * 15 13 12 29 29 H 1.08995 * 109.46982 * 299.99222 * 15 13 12 30 30 H 0.97004 * 119.99661 * 359.97438 * 16 15 13 31 31 H 1.08997 * 109.88062 * 300.74548 * 20 19 17 32 32 H 1.09000 * 109.88248 * 61.90735 * 20 19 17 33 33 H 1.09005 * 110.71834 * 263.82776 * 21 20 19 34 34 H 1.08999 * 110.71553 * 140.55738 * 21 20 19 35 35 H 1.09000 * 111.00849 * 206.42090 * 22 21 20 36 36 H 1.09001 * 111.00585 * 82.56882 * 22 21 20 37 37 H 1.09004 * 110.36499 * 274.44757 * 23 19 17 38 38 H 1.08998 * 110.36482 * 36.65820 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1316 6 6 1.6992 -0.2392 2.4828 7 7 0.9435 0.8304 2.6033 8 14 2.3224 -1.1193 4.0080 9 1 3.8074 -1.1187 4.0079 10 1 1.8278 -0.4189 5.2205 11 1 1.8279 -2.5196 4.0083 12 8 2.0141 -0.6845 -1.1855 13 6 2.2173 0.0638 -2.2811 14 8 1.9974 1.2516 -2.2507 15 6 2.7184 -0.5775 -3.5493 16 7 2.8576 0.4435 -4.5908 17 6 3.2936 0.0985 -5.8186 18 8 3.5719 -1.0597 -6.0617 19 7 3.4212 1.0377 -6.7768 20 6 3.1151 2.4673 -6.6216 21 6 3.3792 3.1429 -7.9838 22 6 3.2774 1.9608 -8.9836 23 6 3.8851 0.8006 -8.1560 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 0.7088 1.1616 3.4843 28 1 2.0090 -1.3372 -3.8773 29 1 3.6873 -1.0410 -3.3638 30 1 2.6352 1.3676 -4.3969 31 1 2.0694 2.5942 -6.3414 32 1 3.7608 2.9041 -5.8598 33 1 4.3755 3.5843 -8.0086 34 1 2.6181 3.8939 -8.1957 35 1 3.8690 2.1538 -9.8785 36 1 2.2384 1.7550 -9.2409 37 1 4.9738 0.8320 -8.2007 38 1 3.5187 -0.1594 -8.5196 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001122622251.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:43 Heat of formation + Delta-G solvation = -137.735169 kcal Electronic energy + Delta-G solvation = -20538.263037 eV Core-core repulsion = 17187.016228 eV Total energy + Delta-G solvation = -3351.246809 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.74969 -41.04341 -38.61479 -37.78997 -35.66620 -35.36869 -32.72444 -31.77873 -30.05978 -28.90671 -27.45954 -24.71180 -23.54790 -22.07575 -21.57620 -21.17075 -19.66396 -18.75197 -18.34735 -17.70126 -17.42596 -17.11937 -16.86361 -16.37625 -15.92756 -15.32431 -14.71438 -14.62127 -14.49776 -14.19934 -13.96077 -13.90489 -13.64716 -13.27979 -13.15263 -13.00866 -12.82511 -12.40528 -12.21483 -12.18979 -12.13777 -11.66436 -11.58890 -11.57065 -11.49740 -11.03787 -10.61079 -10.47547 -9.61602 -8.30270 -6.47026 1.13070 1.19537 1.43281 1.45986 1.54480 1.95986 2.01255 2.39871 2.88137 3.00832 3.65920 3.67747 3.77224 4.07147 4.21064 4.26472 4.30795 4.48846 4.50386 4.63193 4.76688 4.79959 4.86352 4.92498 4.99439 5.04493 5.12297 5.16936 5.23850 5.36346 5.46579 5.60288 5.85583 5.89852 6.02228 6.54983 6.74580 6.83265 7.24101 7.34753 8.77109 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.044051 B = 0.003242 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.472051 B = 8635.485775 C = 8926.431249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.218 3.782 3 H 0.014 0.986 4 C -0.552 4.552 5 H 0.068 0.932 6 C 0.018 3.982 7 N -0.916 5.916 8 Si 0.982 3.018 9 H -0.269 1.269 10 H -0.277 1.277 11 H -0.265 1.265 12 O -0.356 6.356 13 C 0.451 3.549 14 O -0.542 6.542 15 C 0.157 3.843 16 N -0.732 5.732 17 C 0.722 3.278 18 O -0.626 6.626 19 N -0.638 5.638 20 C 0.085 3.915 21 C -0.121 4.121 22 C -0.123 4.123 23 C 0.114 3.886 24 H 0.082 0.918 25 H 0.027 0.973 26 H 0.046 0.954 27 H 0.272 0.728 28 H 0.122 0.878 29 H 0.119 0.881 30 H 0.411 0.589 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.101 0.899 35 H 0.110 0.890 36 H 0.077 0.923 37 H 0.071 0.929 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.007 4.305 -20.479 21.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.165 3.835 3 H 0.032 0.968 4 C -0.590 4.590 5 H 0.087 0.913 6 C -0.182 4.182 7 N -0.553 5.553 8 Si 0.805 3.195 9 H -0.194 1.194 10 H -0.202 1.202 11 H -0.189 1.189 12 O -0.272 6.272 13 C 0.296 3.704 14 O -0.433 6.433 15 C 0.031 3.969 16 N -0.391 5.391 17 C 0.424 3.576 18 O -0.508 6.508 19 N -0.376 5.376 20 C -0.037 4.037 21 C -0.158 4.158 22 C -0.161 4.161 23 C -0.008 4.008 24 H 0.101 0.899 25 H 0.046 0.954 26 H 0.065 0.935 27 H 0.081 0.919 28 H 0.139 0.861 29 H 0.137 0.863 30 H 0.249 0.751 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.107 0.893 34 H 0.120 0.880 35 H 0.128 0.872 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.026 3.883 -20.376 21.130 hybrid contribution -0.072 0.287 1.241 1.276 sum 3.955 4.170 -19.135 19.979 Atomic orbital electron populations 1.22003 0.96529 1.00568 1.01057 1.20430 0.92148 0.92264 0.78629 0.96801 1.21291 1.33643 1.14093 0.89952 0.91346 1.25805 0.94671 0.95649 1.02069 1.70000 1.36440 1.23529 1.25364 0.85239 0.78791 0.78626 0.76806 1.19360 1.20196 1.18919 1.86468 1.75879 1.43539 1.21283 1.23874 0.74139 0.85775 0.86656 1.90572 1.49997 1.17892 1.84828 1.20433 1.04717 0.90278 0.81464 1.44752 1.71994 1.12659 1.09737 1.15364 0.78331 0.83975 0.79939 1.90898 1.59461 1.18775 1.81636 1.47686 1.69522 1.08283 1.12070 1.22314 1.01143 0.79462 1.00783 1.22628 1.04282 0.97675 0.91255 1.22804 1.02283 0.92864 0.98154 1.22332 0.99311 1.00238 0.78888 0.89944 0.95418 0.93511 0.91914 0.86061 0.86345 0.75146 0.91301 0.91291 0.89256 0.88049 0.87162 0.90432 0.91032 0.91624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.25 9.33 71.98 0.67 -6.58 16 2 C 0.22 11.75 2.56 29.85 0.08 11.82 16 3 H 0.01 0.84 7.16 -2.39 -0.02 0.83 16 4 C -0.55 -31.01 8.90 25.60 0.23 -30.78 16 5 H 0.07 3.76 7.81 -2.91 -0.02 3.74 16 6 C 0.02 0.98 5.30 84.66 0.45 1.43 16 7 N -0.92 -51.79 11.32 21.45 0.24 -51.55 16 8 Si 0.98 42.46 29.54 68.60 2.03 44.49 16 9 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 10 H -0.28 -11.54 7.11 99.48 0.71 -10.83 16 11 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 12 O -0.36 -16.70 9.86 -51.35 -0.51 -17.20 16 13 C 0.45 18.12 8.00 71.23 0.57 18.69 16 14 O -0.54 -24.00 14.89 21.94 0.33 -23.67 16 15 C 0.16 4.86 6.27 85.63 0.54 5.40 16 16 N -0.73 -21.35 5.49 -482.30 -2.65 -24.00 16 17 C 0.72 21.56 8.49 179.05 1.52 23.08 16 18 O -0.63 -22.85 16.59 -3.96 -0.07 -22.91 16 19 N -0.64 -14.30 3.33 -829.71 -2.76 -17.06 16 20 C 0.09 1.36 6.15 86.73 0.53 1.89 16 21 C -0.12 -1.09 6.95 31.78 0.22 -0.87 16 22 C -0.12 -1.17 7.09 31.99 0.23 -0.94 16 23 C 0.11 1.96 6.91 86.86 0.60 2.56 16 24 H 0.08 4.46 6.07 -2.39 -0.01 4.45 16 25 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.05 2.22 8.14 -2.38 -0.02 2.20 16 27 H 0.27 14.38 8.31 -92.71 -0.77 13.61 16 28 H 0.12 3.46 8.14 -2.39 -0.02 3.44 16 29 H 0.12 3.47 8.14 -2.39 -0.02 3.45 16 30 H 0.41 11.55 6.43 -92.71 -0.60 10.96 16 31 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.09 0.65 8.14 -2.38 -0.02 0.63 16 34 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 38 H 0.07 1.30 8.03 -2.39 -0.02 1.28 16 Total: -1.00 -69.66 321.63 2.72 -66.94 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: 0.47 Total: 19.25 kcal Atomic # 6 Polarization: 20.08 SS G_CDS: 5.63 Total: 25.71 kcal Atomic # 7 Polarization: -87.44 SS G_CDS: -5.16 Total: -92.60 kcal Atomic # 8 Polarization: -63.54 SS G_CDS: -0.25 Total: -63.79 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.49 kcal Total: -69.66 2.72 -66.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122622251.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.792 kcal (2) G-P(sol) polarization free energy of solvation -69.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds