Wall clock time and date at job start Mon Mar 30 2020 02:22:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.46961 * 2 1 4 4 C 1.50702 * 109.47114 * 119.99957 * 2 1 3 5 5 H 1.08001 * 120.00075 * 119.99949 * 4 2 1 6 6 C 1.37883 * 120.00054 * 300.00224 * 4 2 1 7 7 N 1.31514 * 120.00013 * 179.97438 * 6 4 2 8 8 Si 1.86798 * 119.99857 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.47125 * 90.00242 * 8 6 4 10 10 H 1.48496 * 109.46927 * 210.00162 * 8 6 4 11 11 H 1.48503 * 109.47149 * 330.00108 * 8 6 4 12 12 N 1.46504 * 109.46998 * 239.99892 * 2 1 3 13 13 C 1.46500 * 119.99799 * 299.99857 * 12 2 1 14 14 C 1.34772 * 119.99735 * 120.00143 * 12 2 1 15 15 O 1.21281 * 120.00150 * 359.97438 * 14 12 2 16 16 C 1.50698 * 119.99904 * 180.02562 * 14 12 2 17 17 H 1.09004 * 109.86526 * 304.54647 * 16 14 12 18 18 C 1.54098 * 110.00572 * 65.63807 * 16 14 12 19 19 C 1.54984 * 104.25176 * 121.66260 * 18 16 14 20 20 C 1.54997 * 102.01547 * 20.66710 * 19 18 16 21 21 H 1.08996 * 110.61877 * 81.75263 * 20 19 18 22 22 C 1.50698 * 110.61791 * 204.59992 * 20 19 18 23 23 N 1.34777 * 119.99538 * 292.81431 * 22 20 19 24 24 O 1.21283 * 120.00472 * 112.82093 * 22 20 19 25 25 O 1.43751 * 109.87849 * 183.54651 * 16 14 12 26 26 H 1.09001 * 109.46961 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47134 * 299.99933 * 1 2 3 28 28 H 1.08994 * 109.47124 * 60.00148 * 1 2 3 29 29 H 0.96995 * 119.99932 * 179.97438 * 7 6 4 30 30 H 1.08998 * 109.46879 * 269.99678 * 13 12 2 31 31 H 1.08996 * 109.47319 * 30.00281 * 13 12 2 32 32 H 1.09008 * 109.46576 * 150.00362 * 13 12 2 33 33 H 1.09003 * 110.48561 * 240.20026 * 18 16 14 34 34 H 1.08997 * 110.48740 * 2.84645 * 18 16 14 35 35 H 1.09001 * 110.84045 * 262.53677 * 19 18 16 36 36 H 1.09000 * 111.05133 * 138.88184 * 19 18 16 37 37 H 0.97001 * 120.00485 * 0.02562 * 23 22 20 38 38 H 0.97005 * 119.99790 * 179.72635 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2394 2.4828 7 7 2.1372 -0.8596 3.5566 8 14 0.6259 1.2798 2.6542 9 1 -0.8020 0.8744 2.6993 10 1 0.9772 1.9953 3.9070 11 1 0.8492 2.1773 1.4923 12 7 2.0184 -0.6907 -1.1962 13 6 1.6644 -2.0932 -1.4279 14 6 2.7932 -0.0357 -2.0833 15 8 3.0859 1.1256 -1.8916 16 6 3.2951 -0.7459 -3.3140 17 1 3.8337 -1.6490 -3.0268 18 6 2.1119 -1.1108 -4.2314 19 6 2.4375 -0.4056 -5.5726 20 6 3.9672 -0.1842 -5.4578 21 1 4.5078 -1.0907 -5.7301 22 6 4.4026 0.9712 -6.3218 23 7 4.3286 0.8741 -7.6640 24 8 4.8196 1.9883 -5.8094 25 8 4.1624 0.1239 -4.0608 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.9032 -0.5280 4.4376 30 1 2.4158 -2.7377 -0.9716 31 1 0.6905 -2.3002 -0.9846 32 1 1.6239 -2.2853 -2.5002 33 1 2.0585 -2.1901 -4.3740 34 1 1.1772 -0.7330 -3.8171 35 1 1.9112 0.5459 -5.6482 36 1 2.2001 -1.0482 -6.4205 37 1 3.9948 0.0608 -8.0739 38 1 4.6051 1.6193 -8.2201 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135000211.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:55 Heat of formation + Delta-G solvation = -99.721722 kcal Electronic energy + Delta-G solvation = -21569.052169 eV Core-core repulsion = 18219.453747 eV Total energy + Delta-G solvation = -3349.598422 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.61770 -39.26130 -37.81011 -35.46787 -34.00605 -33.04290 -32.09256 -30.88784 -29.33391 -26.36041 -25.18798 -24.74848 -22.33515 -21.11740 -20.73316 -18.66930 -17.82279 -17.41380 -16.76090 -16.62761 -16.11602 -15.71992 -15.01305 -14.79229 -14.73821 -14.26686 -13.83633 -13.66226 -13.16387 -12.90810 -12.59681 -12.32834 -12.22790 -11.92319 -11.84191 -11.59551 -11.38769 -11.18996 -11.08277 -10.66921 -10.31897 -10.12113 -9.94547 -9.83482 -9.62847 -9.32275 -8.85552 -8.62094 -7.73293 -6.13212 -4.13806 2.41228 2.82693 3.20650 3.24590 3.39193 3.42486 3.57382 4.02380 4.23406 4.37071 4.50906 4.61845 4.79915 4.85145 4.97094 5.16467 5.24034 5.35626 5.44047 5.62334 5.63821 5.80643 5.94151 6.18216 6.24790 6.31171 6.42548 6.48462 6.62130 6.83818 7.05288 7.13530 7.35207 7.63764 8.06025 8.16788 8.47517 8.86043 8.92178 9.47825 10.99555 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.035176 B = 0.004611 C = 0.004438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.816157 B = 6071.523426 C = 6306.943682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.230 3.770 3 H 0.063 0.937 4 C -0.527 4.527 5 H 0.079 0.921 6 C 0.076 3.924 7 N -0.895 5.895 8 Si 0.882 3.118 9 H -0.277 1.277 10 H -0.294 1.294 11 H -0.263 1.263 12 N -0.586 5.586 13 C 0.077 3.923 14 C 0.505 3.495 15 O -0.526 6.526 16 C 0.059 3.941 17 H 0.097 0.903 18 C -0.144 4.144 19 C -0.141 4.141 20 C 0.053 3.947 21 H 0.099 0.901 22 C 0.521 3.479 23 N -0.855 5.855 24 O -0.511 6.511 25 O -0.316 6.316 26 H 0.056 0.944 27 H 0.051 0.949 28 H 0.033 0.967 29 H 0.266 0.734 30 H 0.055 0.945 31 H 0.075 0.925 32 H 0.058 0.942 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.091 0.909 37 H 0.400 0.600 38 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.094 -5.585 -22.901 23.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.128 3.872 3 H 0.081 0.919 4 C -0.565 4.565 5 H 0.097 0.903 6 C -0.127 4.127 7 N -0.533 5.533 8 Si 0.712 3.288 9 H -0.204 1.204 10 H -0.221 1.221 11 H -0.188 1.188 12 N -0.319 5.319 13 C -0.066 4.066 14 C 0.290 3.710 15 O -0.402 6.402 16 C -0.003 4.003 17 H 0.114 0.886 18 C -0.182 4.182 19 C -0.179 4.179 20 C -0.008 4.008 21 H 0.116 0.884 22 C 0.304 3.696 23 N -0.422 5.422 24 O -0.383 6.383 25 O -0.232 6.232 26 H 0.075 0.925 27 H 0.069 0.931 28 H 0.052 0.948 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.094 0.906 32 H 0.077 0.923 33 H 0.110 0.890 34 H 0.108 0.892 35 H 0.103 0.897 36 H 0.110 0.890 37 H 0.228 0.772 38 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -1.533 -4.204 -21.934 22.386 hybrid contribution -0.764 0.253 -0.176 0.824 sum -2.297 -3.951 -22.111 22.578 Atomic orbital electron populations 1.22458 0.99071 1.01022 0.99322 1.19301 0.89927 0.95274 0.82658 0.91943 1.21152 1.32701 1.14244 0.88444 0.90321 1.24861 0.95689 0.96541 0.95616 1.69870 1.45227 1.40196 0.97965 0.86923 0.80329 0.83917 0.77600 1.20400 1.22087 1.18761 1.47789 1.49541 1.11806 1.22785 1.21797 1.02151 0.82870 0.99816 1.20125 0.79562 0.87314 0.84000 1.90706 1.56678 1.16767 1.76005 1.22766 0.91580 0.93534 0.92393 0.88577 1.23022 0.99314 1.01730 0.94093 1.23157 0.93840 1.02450 0.98498 1.23013 0.96781 0.96084 0.84963 0.88371 1.20224 0.77848 0.88756 0.82795 1.43724 1.70194 1.21484 1.06764 1.90834 1.43519 1.30778 1.73211 1.89184 1.60884 1.59699 1.13465 0.92493 0.93079 0.94831 0.92433 0.92684 0.90601 0.92314 0.88988 0.89165 0.89713 0.89020 0.77181 0.76436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.44 8.65 37.16 0.32 -3.12 16 2 C 0.23 5.63 2.23 -69.08 -0.15 5.48 16 3 H 0.06 1.73 5.96 -51.93 -0.31 1.42 16 4 C -0.53 -14.73 8.95 -34.44 -0.31 -15.04 16 5 H 0.08 2.35 7.89 -52.49 -0.41 1.94 16 6 C 0.08 2.18 5.45 -17.82 -0.10 2.09 16 7 N -0.90 -27.18 13.96 55.43 0.77 -26.40 16 8 Si 0.88 22.16 24.37 -169.99 -4.14 18.02 16 9 H -0.28 -6.59 6.87 56.52 0.39 -6.20 16 10 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 11 H -0.26 -6.59 6.53 56.52 0.37 -6.23 16 12 N -0.59 -12.03 2.75 -175.26 -0.48 -12.51 16 13 C 0.08 1.18 9.27 59.85 0.55 1.74 16 14 C 0.50 10.61 6.87 -10.99 -0.08 10.54 16 15 O -0.53 -13.83 15.85 -14.01 -0.22 -14.06 16 16 C 0.06 0.90 3.03 -27.31 -0.08 0.81 16 17 H 0.10 1.25 7.99 -51.93 -0.42 0.84 16 18 C -0.14 -1.47 4.71 -25.11 -0.12 -1.58 16 19 C -0.14 -1.22 6.59 -24.63 -0.16 -1.38 16 20 C 0.05 0.60 3.76 -26.83 -0.10 0.50 16 21 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 22 C 0.52 6.45 7.47 -10.99 -0.08 6.36 16 23 N -0.85 -5.53 8.87 31.22 0.28 -5.25 16 24 O -0.51 -9.52 17.40 -13.51 -0.24 -9.75 16 25 O -0.32 -5.51 10.02 -64.30 -0.64 -6.16 16 26 H 0.06 1.11 6.66 -51.93 -0.35 0.76 16 27 H 0.05 1.15 3.27 -51.93 -0.17 0.98 16 28 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 30 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.08 1.15 6.43 -51.93 -0.33 0.82 16 32 H 0.06 0.64 4.43 -51.92 -0.23 0.41 16 33 H 0.09 0.61 7.55 -51.93 -0.39 0.22 16 34 H 0.09 1.02 7.45 -51.93 -0.39 0.63 16 35 H 0.08 0.86 8.05 -51.93 -0.42 0.44 16 36 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.40 1.06 8.83 -40.82 -0.36 0.70 16 38 H 0.40 2.26 8.93 -40.82 -0.36 1.90 16 LS Contribution 305.03 15.07 4.60 4.60 Total: -1.00 -39.90 305.03 -5.40 -45.29 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: -5.01 Total: -0.16 kcal Atomic # 6 Polarization: 6.69 SS G_CDS: -0.30 Total: 6.39 kcal Atomic # 7 Polarization: -44.74 SS G_CDS: 0.57 Total: -44.17 kcal Atomic # 8 Polarization: -28.86 SS G_CDS: -1.10 Total: -29.96 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.14 Total: 18.02 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -39.90 -5.40 -45.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135000211.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.430 kcal (2) G-P(sol) polarization free energy of solvation -39.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds