Wall clock time and date at job start Mon Mar 30 2020 02:22:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.46961 * 2 1 4 4 C 1.50702 * 109.47114 * 119.99957 * 2 1 3 5 5 H 1.08001 * 120.00075 * 119.99949 * 4 2 1 6 6 C 1.37883 * 120.00054 * 300.00224 * 4 2 1 7 7 N 1.31514 * 120.00013 * 179.97438 * 6 4 2 8 8 Si 1.86798 * 119.99857 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.47125 * 90.00242 * 8 6 4 10 10 H 1.48496 * 109.46927 * 210.00162 * 8 6 4 11 11 H 1.48503 * 109.47149 * 330.00108 * 8 6 4 12 12 N 1.46504 * 109.46998 * 239.99892 * 2 1 3 13 13 C 1.46500 * 119.99799 * 299.99857 * 12 2 1 14 14 C 1.34772 * 119.99735 * 120.00143 * 12 2 1 15 15 O 1.21281 * 120.00150 * 359.97438 * 14 12 2 16 16 C 1.50698 * 119.99904 * 180.02562 * 14 12 2 17 17 H 1.09004 * 109.86526 * 304.54647 * 16 14 12 18 18 C 1.54098 * 110.00572 * 65.63807 * 16 14 12 19 19 C 1.54984 * 104.25176 * 121.66260 * 18 16 14 20 20 C 1.54997 * 102.01547 * 20.66710 * 19 18 16 21 21 H 1.08996 * 110.61877 * 81.75263 * 20 19 18 22 22 C 1.50698 * 110.61791 * 204.59992 * 20 19 18 23 23 N 1.34777 * 119.99538 * 292.81431 * 22 20 19 24 24 O 1.21283 * 120.00472 * 112.82093 * 22 20 19 25 25 O 1.43751 * 109.87849 * 183.54651 * 16 14 12 26 26 H 1.09001 * 109.46961 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47134 * 299.99933 * 1 2 3 28 28 H 1.08994 * 109.47124 * 60.00148 * 1 2 3 29 29 H 0.96995 * 119.99932 * 179.97438 * 7 6 4 30 30 H 1.08998 * 109.46879 * 269.99678 * 13 12 2 31 31 H 1.08996 * 109.47319 * 30.00281 * 13 12 2 32 32 H 1.09008 * 109.46576 * 150.00362 * 13 12 2 33 33 H 1.09003 * 110.48561 * 240.20026 * 18 16 14 34 34 H 1.08997 * 110.48740 * 2.84645 * 18 16 14 35 35 H 1.09001 * 110.84045 * 262.53677 * 19 18 16 36 36 H 1.09000 * 111.05133 * 138.88184 * 19 18 16 37 37 H 0.97001 * 120.00485 * 0.02562 * 23 22 20 38 38 H 0.97005 * 119.99790 * 179.72635 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2394 2.4828 7 7 2.1372 -0.8596 3.5566 8 14 0.6259 1.2798 2.6542 9 1 -0.8020 0.8744 2.6993 10 1 0.9772 1.9953 3.9070 11 1 0.8492 2.1773 1.4923 12 7 2.0184 -0.6907 -1.1962 13 6 1.6644 -2.0932 -1.4279 14 6 2.7932 -0.0357 -2.0833 15 8 3.0859 1.1256 -1.8916 16 6 3.2951 -0.7459 -3.3140 17 1 3.8337 -1.6490 -3.0268 18 6 2.1119 -1.1108 -4.2314 19 6 2.4375 -0.4056 -5.5726 20 6 3.9672 -0.1842 -5.4578 21 1 4.5078 -1.0907 -5.7301 22 6 4.4026 0.9712 -6.3218 23 7 4.3286 0.8741 -7.6640 24 8 4.8196 1.9883 -5.8094 25 8 4.1624 0.1239 -4.0608 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.9032 -0.5280 4.4376 30 1 2.4158 -2.7377 -0.9716 31 1 0.6905 -2.3002 -0.9846 32 1 1.6239 -2.2853 -2.5002 33 1 2.0585 -2.1901 -4.3740 34 1 1.1772 -0.7330 -3.8171 35 1 1.9112 0.5459 -5.6482 36 1 2.2001 -1.0482 -6.4205 37 1 3.9948 0.0608 -8.0739 38 1 4.6051 1.6193 -8.2201 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135000211.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:55 Heat of formation + Delta-G solvation = -134.301437 kcal Electronic energy + Delta-G solvation = -21570.551658 eV Core-core repulsion = 18219.453747 eV Total energy + Delta-G solvation = -3351.097911 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.73964 -40.54908 -39.03652 -37.24421 -34.92776 -34.85503 -33.31709 -32.39994 -30.52767 -27.75884 -27.16537 -25.92227 -23.38385 -22.60831 -21.58397 -20.18892 -18.97141 -18.65702 -18.30843 -17.88695 -17.31239 -17.19645 -16.61303 -16.15262 -15.66771 -15.49860 -15.34738 -14.90211 -14.57411 -14.49847 -14.13614 -13.93856 -13.58888 -13.46173 -13.10071 -12.98534 -12.66416 -12.58502 -12.36777 -12.06547 -11.92736 -11.60563 -11.42222 -11.31914 -10.87884 -10.81540 -10.71592 -10.39285 -9.42993 -8.37313 -6.41545 1.22625 1.33995 1.42424 1.50915 1.63482 1.88926 2.25773 2.36939 2.98009 3.06607 3.38079 3.62072 3.77300 3.89649 4.05648 4.15406 4.29530 4.43881 4.46532 4.57964 4.59360 4.63204 4.76691 4.82640 4.94131 4.98644 5.07357 5.09672 5.29266 5.47567 5.60434 5.72795 5.89129 6.19535 6.46019 6.59762 6.69689 7.19533 7.33124 7.35032 8.78722 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.035176 B = 0.004611 C = 0.004438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.816157 B = 6071.523426 C = 6306.943682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.229 3.771 3 H 0.020 0.980 4 C -0.526 4.526 5 H 0.047 0.953 6 C 0.024 3.976 7 N -0.938 5.938 8 Si 0.939 3.061 9 H -0.247 1.247 10 H -0.296 1.296 11 H -0.270 1.270 12 N -0.589 5.589 13 C 0.071 3.929 14 C 0.489 3.511 15 O -0.597 6.597 16 C 0.063 3.937 17 H 0.122 0.878 18 C -0.139 4.139 19 C -0.130 4.130 20 C 0.044 3.956 21 H 0.145 0.855 22 C 0.514 3.486 23 N -0.822 5.822 24 O -0.591 6.591 25 O -0.372 6.372 26 H 0.078 0.922 27 H 0.040 0.960 28 H 0.055 0.945 29 H 0.269 0.731 30 H 0.049 0.951 31 H 0.080 0.920 32 H 0.112 0.888 33 H 0.146 0.854 34 H 0.079 0.921 35 H 0.061 0.939 36 H 0.151 0.849 37 H 0.424 0.576 38 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.079 -7.937 -26.200 27.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.126 3.874 3 H 0.038 0.962 4 C -0.565 4.565 5 H 0.065 0.935 6 C -0.175 4.175 7 N -0.577 5.577 8 Si 0.767 3.233 9 H -0.172 1.172 10 H -0.223 1.223 11 H -0.195 1.195 12 N -0.321 5.321 13 C -0.070 4.070 14 C 0.278 3.722 15 O -0.478 6.478 16 C 0.002 3.998 17 H 0.140 0.860 18 C -0.176 4.176 19 C -0.167 4.167 20 C -0.016 4.016 21 H 0.163 0.837 22 C 0.299 3.701 23 N -0.388 5.388 24 O -0.470 6.470 25 O -0.290 6.290 26 H 0.097 0.903 27 H 0.059 0.941 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.098 0.902 32 H 0.130 0.870 33 H 0.164 0.836 34 H 0.098 0.902 35 H 0.080 0.920 36 H 0.169 0.831 37 H 0.256 0.744 38 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -3.566 -6.660 -25.326 26.429 hybrid contribution -0.036 0.922 0.752 1.191 sum -3.602 -5.738 -24.574 25.491 Atomic orbital electron populations 1.22288 0.96045 1.02678 0.99900 1.18969 0.92194 0.93099 0.83184 0.96161 1.21360 1.31798 1.13165 0.90147 0.93454 1.25618 0.97176 0.99314 0.95354 1.69990 1.47071 1.42079 0.98576 0.86008 0.80271 0.80204 0.76855 1.17176 1.22328 1.19519 1.47856 1.49228 1.13704 1.21318 1.22133 1.01983 0.79464 1.03437 1.21418 0.78354 0.86857 0.85590 1.90660 1.59144 1.20090 1.77868 1.22877 0.93780 0.92574 0.90546 0.86021 1.23158 0.96224 1.05054 0.93204 1.23222 0.91172 1.02491 0.99831 1.23498 0.99362 0.96854 0.81892 0.83741 1.20704 0.76860 0.88147 0.84403 1.43458 1.67904 1.22640 1.04841 1.90806 1.47578 1.33714 1.74944 1.89143 1.61739 1.61166 1.16925 0.90266 0.94102 0.92552 0.92208 0.93252 0.90161 0.86969 0.83609 0.90190 0.92026 0.83065 0.74353 0.75693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.25 8.65 71.98 0.62 -5.63 16 2 C 0.23 11.40 2.23 44.25 0.10 11.50 16 3 H 0.02 1.19 5.96 -2.39 -0.01 1.17 16 4 C -0.53 -30.25 8.95 25.60 0.23 -30.03 16 5 H 0.05 2.94 7.89 -2.91 -0.02 2.92 16 6 C 0.02 1.43 5.45 84.66 0.46 1.89 16 7 N -0.94 -58.39 13.96 21.45 0.30 -58.09 16 8 Si 0.94 46.42 24.37 68.60 1.67 48.09 16 9 H -0.25 -10.94 6.87 99.48 0.68 -10.25 16 10 H -0.30 -14.59 7.11 99.48 0.71 -13.88 16 11 H -0.27 -13.56 6.53 99.48 0.65 -12.91 16 12 N -0.59 -24.07 2.75 -826.78 -2.28 -26.34 16 13 C 0.07 2.00 9.27 127.77 1.18 3.19 16 14 C 0.49 20.89 6.87 87.66 0.60 21.49 16 15 O -0.60 -33.30 15.85 15.67 0.25 -33.05 16 16 C 0.06 1.80 3.03 30.22 0.09 1.89 16 17 H 0.12 2.79 7.99 -2.38 -0.02 2.77 16 18 C -0.14 -2.16 4.71 31.64 0.15 -2.01 16 19 C -0.13 -1.63 6.59 31.96 0.21 -1.42 16 20 C 0.04 0.86 3.76 30.53 0.11 0.98 16 21 H 0.15 1.43 8.14 -2.39 -0.02 1.41 16 22 C 0.51 12.12 7.47 87.66 0.65 12.78 16 23 N -0.82 -8.27 8.87 -173.53 -1.54 -9.81 16 24 O -0.59 -22.97 17.40 15.19 0.26 -22.70 16 25 O -0.37 -12.86 10.02 -121.19 -1.21 -14.07 16 26 H 0.08 2.88 6.66 -2.39 -0.02 2.87 16 27 H 0.04 1.76 3.27 -2.39 -0.01 1.76 16 28 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 29 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 30 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.08 2.19 6.43 -2.39 -0.02 2.18 16 32 H 0.11 1.91 4.43 -2.38 -0.01 1.89 16 33 H 0.15 0.75 7.55 -2.39 -0.02 0.74 16 34 H 0.08 1.47 7.45 -2.39 -0.02 1.46 16 35 H 0.06 1.09 8.05 -2.39 -0.02 1.07 16 36 H 0.15 0.13 8.14 -2.39 -0.02 0.11 16 37 H 0.42 0.23 8.83 -92.71 -0.82 -0.59 16 38 H 0.41 3.71 8.93 -92.70 -0.83 2.88 16 Total: -1.00 -98.64 305.03 1.26 -97.38 By element: Atomic # 1 Polarization: 4.58 SS G_CDS: -0.62 Total: 3.97 kcal Atomic # 6 Polarization: 10.21 SS G_CDS: 4.42 Total: 14.63 kcal Atomic # 7 Polarization: -90.73 SS G_CDS: -3.52 Total: -94.24 kcal Atomic # 8 Polarization: -69.12 SS G_CDS: -0.70 Total: -69.82 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 1.67 Total: 48.09 kcal Total: -98.64 1.26 -97.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135000211.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.921 kcal (2) G-P(sol) polarization free energy of solvation -98.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds