Wall clock time and date at job start Mon Mar 30 2020 00:50:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 120.00284 * 2 1 4 4 H 1.48501 * 109.47066 * 239.99727 * 3 2 1 5 5 H 1.48499 * 109.47137 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47333 * 119.99819 * 3 2 1 7 7 C 1.37876 * 119.99993 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00507 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00193 * 0.02562 * 7 2 1 10 10 C 1.50697 * 109.47737 * 179.97438 * 9 7 2 11 11 O 1.21283 * 119.99458 * 0.02562 * 10 9 7 12 12 N 1.34770 * 120.00486 * 179.97438 * 10 9 7 13 13 C 1.46493 * 120.00396 * 179.97438 * 12 10 9 14 14 C 1.52996 * 109.47400 * 180.02562 * 13 12 10 15 15 C 1.50702 * 109.47159 * 180.02562 * 14 13 12 16 16 O 1.21283 * 120.00262 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99928 * 179.72352 * 15 14 13 18 18 C 1.47151 * 120.98153 * 359.97438 * 17 15 14 19 19 C 1.53717 * 108.16446 * 129.42886 * 18 17 15 20 20 O 1.42967 * 109.14561 * 52.53739 * 19 18 17 21 21 C 1.42962 * 114.16617 * 297.29050 * 20 19 18 22 22 C 1.47151 * 120.98263 * 180.27616 * 17 15 14 23 23 H 0.96996 * 119.99510 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.46945 * 59.99992 * 9 7 2 25 25 H 1.09000 * 109.47110 * 300.00651 * 9 7 2 26 26 H 0.97001 * 119.99561 * 0.02562 * 12 10 9 27 27 H 1.09004 * 109.46794 * 60.00268 * 13 12 10 28 28 H 1.09000 * 109.47559 * 300.00745 * 13 12 10 29 29 H 1.09004 * 109.47066 * 60.00265 * 14 13 12 30 30 H 1.08994 * 109.47405 * 300.00096 * 14 13 12 31 31 H 1.08997 * 109.67944 * 249.20758 * 18 17 15 32 32 H 1.09001 * 109.68346 * 9.76100 * 18 17 15 33 33 H 1.08998 * 109.65611 * 292.57311 * 19 18 17 34 34 H 1.08994 * 109.48424 * 172.39690 * 19 18 17 35 35 H 1.09008 * 109.51186 * 302.65841 * 21 20 19 36 36 H 1.08996 * 109.55507 * 182.53559 * 21 20 19 37 37 H 1.09000 * 109.68250 * 350.23937 * 22 17 15 38 38 H 1.09002 * 109.68088 * 110.79250 * 22 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7465 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2302 -3.6447 0.0005 11 8 3.4227 -3.4230 0.0010 12 7 1.7810 -4.9153 0.0011 13 6 2.7329 -6.0288 0.0005 14 6 1.9679 -7.3538 0.0006 15 6 2.9472 -8.4993 0.0007 16 8 4.1396 -8.2777 0.0011 17 7 2.4979 -9.7699 0.0064 18 6 1.0560 -10.0635 0.0133 19 6 0.7669 -11.0715 -1.1106 20 8 1.6432 -12.1926 -0.9719 21 6 3.0298 -11.8717 -1.1063 22 6 3.4348 -10.9046 0.0127 23 1 -0.4849 0.8401 -0.0004 24 1 0.6247 -2.5571 -0.8897 25 1 0.6240 -2.5567 0.8902 26 1 0.8273 -5.0925 0.0011 27 1 3.3602 -5.9710 0.8901 28 1 3.3590 -5.9712 -0.8899 29 1 1.3409 -7.4114 -0.8892 30 1 1.3416 -7.4117 0.8908 31 1 0.7730 -10.4908 0.9752 32 1 0.4937 -9.1462 -0.1612 33 1 0.9314 -10.5985 -2.0787 34 1 -0.2677 -11.4073 -1.0406 35 1 3.2026 -11.4015 -2.0744 36 1 3.6239 -12.7826 -1.0329 37 1 4.4487 -10.5446 -0.1622 38 1 3.3868 -11.4151 0.9746 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143188339.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:44 Heat of formation + Delta-G solvation = -120.829433 kcal Electronic energy + Delta-G solvation = -20240.682687 eV Core-core repulsion = 16890.168966 eV Total energy + Delta-G solvation = -3350.513721 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.68816 -38.89085 -38.37975 -35.14151 -34.69202 -32.90415 -32.13719 -30.76965 -28.86720 -28.01379 -24.99011 -24.15194 -22.97575 -21.90555 -19.95087 -19.26180 -17.66285 -16.88073 -16.37432 -16.32172 -16.17567 -15.81677 -15.50971 -15.42676 -14.92129 -14.68526 -14.28809 -13.86768 -13.79897 -13.04241 -12.99759 -12.61549 -12.38740 -12.06487 -11.89510 -11.69658 -11.63321 -11.20526 -11.05263 -10.78413 -10.65573 -10.56260 -10.08736 -9.94135 -9.26930 -8.98986 -8.64147 -8.48847 -8.38737 -6.04586 -4.03753 2.33347 2.43623 3.31766 3.39255 3.40797 3.46811 3.75354 3.78441 4.22095 4.33188 4.47168 4.51922 4.57055 4.69065 4.73633 4.78112 4.91977 5.00608 5.12041 5.20706 5.27173 5.33822 5.34399 5.45028 5.94526 5.98541 6.05542 6.42142 6.58092 6.92683 7.02763 7.18841 7.33954 7.84288 7.97499 8.06306 8.45340 9.07224 9.25879 9.61403 11.07877 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.051023 B = 0.002846 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.640585 B = 9835.168089 C =10250.490819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.054 3.946 3 Si 0.902 3.098 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.508 4.508 8 H 0.075 0.925 9 C 0.006 3.994 10 C 0.513 3.487 11 O -0.542 6.542 12 N -0.752 5.752 13 C 0.136 3.864 14 C -0.151 4.151 15 C 0.523 3.477 16 O -0.528 6.528 17 N -0.622 5.622 18 C 0.071 3.929 19 C 0.046 3.954 20 O -0.380 6.380 21 C 0.048 3.952 22 C 0.076 3.924 23 H 0.262 0.738 24 H 0.047 0.953 25 H 0.048 0.952 26 H 0.394 0.606 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.100 0.900 30 H 0.101 0.899 31 H 0.080 0.920 32 H 0.099 0.901 33 H 0.058 0.942 34 H 0.108 0.892 35 H 0.057 0.943 36 H 0.107 0.893 37 H 0.103 0.897 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.351 -25.724 -1.201 25.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.146 4.146 3 Si 0.730 3.270 4 H -0.201 1.201 5 H -0.214 1.214 6 H -0.201 1.201 7 C -0.547 4.547 8 H 0.093 0.907 9 C -0.033 4.033 10 C 0.303 3.697 11 O -0.418 6.418 12 N -0.407 5.407 13 C 0.011 3.989 14 C -0.191 4.191 15 C 0.311 3.689 16 O -0.404 6.404 17 N -0.359 5.359 18 C -0.052 4.052 19 C -0.032 4.032 20 O -0.299 6.299 21 C -0.030 4.030 22 C -0.047 4.047 23 H 0.071 0.929 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.228 0.772 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.118 0.882 30 H 0.119 0.881 31 H 0.099 0.901 32 H 0.117 0.883 33 H 0.077 0.923 34 H 0.126 0.874 35 H 0.075 0.925 36 H 0.125 0.875 37 H 0.121 0.879 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.013 -25.464 -1.165 25.510 hybrid contribution -0.164 0.912 -0.006 0.927 sum -1.177 -24.552 -1.171 24.608 Atomic orbital electron populations 1.69948 1.06034 1.26995 1.51242 1.25003 0.94919 0.99478 0.95210 0.86477 0.79375 0.82226 0.78905 1.20114 1.21372 1.20106 1.21150 0.94290 0.89176 1.50083 0.90726 1.19229 0.94114 0.90522 0.99427 1.22020 0.91148 0.83271 0.73242 1.90556 1.18079 1.84567 1.48558 1.46304 1.09284 1.06052 1.79095 1.20844 0.91669 0.83086 1.03323 1.21874 0.98828 0.93510 1.04883 1.20606 0.89709 0.83249 0.75355 1.90751 1.16939 1.83941 1.48723 1.48172 1.07041 1.05711 1.74928 1.22578 0.81221 1.00876 1.00555 1.23084 0.95099 0.87599 0.97383 1.87973 1.16160 1.32511 1.93221 1.23015 0.82758 0.99573 0.97618 1.22295 0.95411 0.87128 0.99820 0.92876 0.93473 0.93453 0.77242 0.91335 0.91373 0.88179 0.88092 0.90145 0.88270 0.92337 0.87397 0.92472 0.87512 0.87904 0.90622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.51 13.29 55.43 0.74 -25.77 16 2 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 3 Si 0.90 22.38 29.54 -169.99 -5.02 17.36 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.51 -14.95 8.92 -34.44 -0.31 -15.26 16 8 H 0.07 2.30 6.75 -52.49 -0.35 1.94 16 9 C 0.01 0.16 5.46 -29.04 -0.16 0.00 16 10 C 0.51 11.87 7.82 -10.99 -0.09 11.78 16 11 O -0.54 -14.70 15.46 5.55 0.09 -14.61 16 12 N -0.75 -12.67 5.55 -60.30 -0.33 -13.00 16 13 C 0.14 2.08 4.96 -4.05 -0.02 2.06 16 14 C -0.15 -1.51 4.19 -27.88 -0.12 -1.62 16 15 C 0.52 6.14 7.71 -10.98 -0.08 6.06 16 16 O -0.53 -8.47 15.45 5.55 0.09 -8.39 16 17 N -0.62 -5.53 3.01 -171.99 -0.52 -6.05 16 18 C 0.07 0.41 6.56 -3.31 -0.02 0.38 16 19 C 0.05 0.26 7.00 37.53 0.26 0.52 16 20 O -0.38 -2.97 10.74 -35.23 -0.38 -3.35 16 21 C 0.05 0.32 6.99 37.33 0.26 0.58 16 22 C 0.08 0.61 6.64 -3.51 -0.02 0.59 16 23 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 24 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 25 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 26 H 0.39 5.22 8.47 -40.82 -0.35 4.87 16 27 H 0.07 1.20 8.10 -51.93 -0.42 0.78 16 28 H 0.07 1.18 8.10 -51.93 -0.42 0.76 16 29 H 0.10 0.76 7.67 -51.93 -0.40 0.36 16 30 H 0.10 0.79 8.00 -51.93 -0.42 0.37 16 31 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.10 0.40 6.06 -51.93 -0.31 0.08 16 33 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.11 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.06 0.40 8.14 -51.92 -0.42 -0.02 16 36 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.10 0.95 7.08 -51.93 -0.37 0.59 16 38 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 319.76 15.07 4.82 4.82 Total: -1.00 -36.94 319.76 -6.47 -43.41 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: -5.55 Total: -0.99 kcal Atomic # 6 Polarization: 6.96 SS G_CDS: -0.39 Total: 6.57 kcal Atomic # 7 Polarization: -44.71 SS G_CDS: -0.12 Total: -44.82 kcal Atomic # 8 Polarization: -26.15 SS G_CDS: -0.21 Total: -26.35 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -36.94 -6.47 -43.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143188339.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.417 kcal (2) G-P(sol) polarization free energy of solvation -36.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds