Wall clock time and date at job start Mon Mar 30 2020 00:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 120.00284 * 2 1 4 4 H 1.48501 * 109.47066 * 239.99727 * 3 2 1 5 5 H 1.48499 * 109.47137 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47333 * 119.99819 * 3 2 1 7 7 C 1.37876 * 119.99993 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00507 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00193 * 0.02562 * 7 2 1 10 10 C 1.50697 * 109.47737 * 179.97438 * 9 7 2 11 11 O 1.21283 * 119.99458 * 0.02562 * 10 9 7 12 12 N 1.34770 * 120.00486 * 179.97438 * 10 9 7 13 13 C 1.46493 * 120.00396 * 179.97438 * 12 10 9 14 14 C 1.52996 * 109.47400 * 180.02562 * 13 12 10 15 15 C 1.50702 * 109.47159 * 180.02562 * 14 13 12 16 16 O 1.21283 * 120.00262 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99928 * 179.72352 * 15 14 13 18 18 C 1.47151 * 120.98153 * 359.97438 * 17 15 14 19 19 C 1.53717 * 108.16446 * 129.42886 * 18 17 15 20 20 O 1.42967 * 109.14561 * 52.53739 * 19 18 17 21 21 C 1.42962 * 114.16617 * 297.29050 * 20 19 18 22 22 C 1.47151 * 120.98263 * 180.27616 * 17 15 14 23 23 H 0.96996 * 119.99510 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.46945 * 59.99992 * 9 7 2 25 25 H 1.09000 * 109.47110 * 300.00651 * 9 7 2 26 26 H 0.97001 * 119.99561 * 0.02562 * 12 10 9 27 27 H 1.09004 * 109.46794 * 60.00268 * 13 12 10 28 28 H 1.09000 * 109.47559 * 300.00745 * 13 12 10 29 29 H 1.09004 * 109.47066 * 60.00265 * 14 13 12 30 30 H 1.08994 * 109.47405 * 300.00096 * 14 13 12 31 31 H 1.08997 * 109.67944 * 249.20758 * 18 17 15 32 32 H 1.09001 * 109.68346 * 9.76100 * 18 17 15 33 33 H 1.08998 * 109.65611 * 292.57311 * 19 18 17 34 34 H 1.08994 * 109.48424 * 172.39690 * 19 18 17 35 35 H 1.09008 * 109.51186 * 302.65841 * 21 20 19 36 36 H 1.08996 * 109.55507 * 182.53559 * 21 20 19 37 37 H 1.09000 * 109.68250 * 350.23937 * 22 17 15 38 38 H 1.09002 * 109.68088 * 110.79250 * 22 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7465 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2302 -3.6447 0.0005 11 8 3.4227 -3.4230 0.0010 12 7 1.7810 -4.9153 0.0011 13 6 2.7329 -6.0288 0.0005 14 6 1.9679 -7.3538 0.0006 15 6 2.9472 -8.4993 0.0007 16 8 4.1396 -8.2777 0.0011 17 7 2.4979 -9.7699 0.0064 18 6 1.0560 -10.0635 0.0133 19 6 0.7669 -11.0715 -1.1106 20 8 1.6432 -12.1926 -0.9719 21 6 3.0298 -11.8717 -1.1063 22 6 3.4348 -10.9046 0.0127 23 1 -0.4849 0.8401 -0.0004 24 1 0.6247 -2.5571 -0.8897 25 1 0.6240 -2.5567 0.8902 26 1 0.8273 -5.0925 0.0011 27 1 3.3602 -5.9710 0.8901 28 1 3.3590 -5.9712 -0.8899 29 1 1.3409 -7.4114 -0.8892 30 1 1.3416 -7.4117 0.8908 31 1 0.7730 -10.4908 0.9752 32 1 0.4937 -9.1462 -0.1612 33 1 0.9314 -10.5985 -2.0787 34 1 -0.2677 -11.4073 -1.0406 35 1 3.2026 -11.4015 -2.0744 36 1 3.6239 -12.7826 -1.0329 37 1 4.4487 -10.5446 -0.1622 38 1 3.3868 -11.4151 0.9746 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143188339.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:43 Heat of formation + Delta-G solvation = -149.996199 kcal Electronic energy + Delta-G solvation = -20241.947453 eV Core-core repulsion = 16890.168966 eV Total energy + Delta-G solvation = -3351.778487 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.46859 -40.40045 -39.36306 -36.18177 -35.87021 -35.08940 -32.90315 -31.94828 -30.61777 -28.82673 -26.27435 -25.17929 -24.28574 -22.74467 -21.54852 -20.12233 -18.64638 -18.38004 -17.77698 -17.37203 -17.20778 -16.85255 -16.51765 -16.35645 -16.15041 -16.01804 -15.75868 -15.02990 -14.77587 -14.44351 -14.15313 -14.12050 -13.55631 -13.24377 -13.04785 -12.80237 -12.66242 -12.61132 -12.43228 -12.34376 -12.02991 -11.77317 -11.46199 -11.26484 -10.99215 -10.62096 -10.54547 -10.03735 -9.66619 -8.25122 -6.31712 1.40372 1.42945 1.46384 1.51573 1.68955 1.88830 2.35403 2.52770 2.87112 3.10301 3.46435 3.68719 3.77253 3.99382 4.00834 4.10473 4.21500 4.28254 4.37330 4.41534 4.55236 4.65322 4.74875 4.79553 4.85824 4.93699 4.94641 5.10460 5.29205 5.33662 5.52016 5.73811 6.07162 6.10168 6.19452 6.72819 6.85264 6.99887 7.34340 7.52978 8.86698 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.051023 B = 0.002846 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.640585 B = 9835.168089 C =10250.490819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.013 3.987 3 Si 0.961 3.039 4 H -0.274 1.274 5 H -0.272 1.272 6 H -0.274 1.274 7 C -0.541 4.541 8 H 0.051 0.949 9 C 0.011 3.989 10 C 0.515 3.485 11 O -0.590 6.590 12 N -0.722 5.722 13 C 0.138 3.862 14 C -0.136 4.136 15 C 0.518 3.482 16 O -0.584 6.584 17 N -0.617 5.617 18 C 0.065 3.935 19 C 0.042 3.958 20 O -0.396 6.396 21 C 0.054 3.946 22 C 0.072 3.928 23 H 0.268 0.732 24 H 0.048 0.952 25 H 0.048 0.952 26 H 0.417 0.583 27 H 0.044 0.956 28 H 0.044 0.956 29 H 0.135 0.865 30 H 0.135 0.865 31 H 0.092 0.908 32 H 0.123 0.877 33 H 0.058 0.942 34 H 0.132 0.868 35 H 0.052 0.948 36 H 0.124 0.876 37 H 0.084 0.916 38 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.282 -26.750 -1.209 27.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.186 4.186 3 Si 0.786 3.214 4 H -0.199 1.199 5 H -0.196 1.196 6 H -0.199 1.199 7 C -0.580 4.580 8 H 0.069 0.931 9 C -0.029 4.029 10 C 0.304 3.696 11 O -0.470 6.470 12 N -0.377 5.377 13 C 0.014 3.986 14 C -0.175 4.175 15 C 0.307 3.693 16 O -0.464 6.464 17 N -0.351 5.351 18 C -0.056 4.056 19 C -0.035 4.035 20 O -0.314 6.314 21 C -0.024 4.024 22 C -0.051 4.051 23 H 0.077 0.923 24 H 0.066 0.934 25 H 0.065 0.935 26 H 0.254 0.746 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.153 0.847 30 H 0.153 0.847 31 H 0.110 0.890 32 H 0.141 0.859 33 H 0.076 0.924 34 H 0.150 0.850 35 H 0.070 0.930 36 H 0.142 0.858 37 H 0.102 0.898 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.039 -26.568 -1.175 26.767 hybrid contribution 0.378 1.131 -0.001 1.193 sum -2.662 -25.437 -1.176 25.603 Atomic orbital electron populations 1.70002 1.06950 1.28170 1.51061 1.25734 0.95873 1.02538 0.94471 0.85558 0.78436 0.78567 0.78815 1.19930 1.19633 1.19936 1.21365 0.93634 0.91571 1.51393 0.93067 1.19071 0.94124 0.90417 0.99248 1.21593 0.89852 0.84853 0.73281 1.90537 1.19703 1.85602 1.51118 1.45866 1.10868 1.04471 1.76463 1.20801 0.91645 0.85061 1.01103 1.21789 0.98143 0.89423 1.08177 1.20875 0.89132 0.84476 0.74831 1.90738 1.19213 1.84847 1.51631 1.48268 1.08764 1.04906 1.73177 1.22892 0.79142 1.02231 1.01352 1.23284 0.95926 0.87094 0.97225 1.87958 1.16498 1.33744 1.93221 1.23012 0.82870 0.99892 0.96609 1.22370 0.94606 0.87153 1.00928 0.92310 0.93446 0.93451 0.74568 0.93769 0.93723 0.84681 0.84742 0.88987 0.85879 0.92396 0.85018 0.92975 0.85770 0.89757 0.89750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.58 13.29 21.45 0.28 -53.29 16 2 C 0.01 0.73 5.46 84.65 0.46 1.19 16 3 Si 0.96 45.73 29.54 68.60 2.03 47.75 16 4 H -0.27 -12.89 7.11 99.48 0.71 -12.18 16 5 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 6 H -0.27 -12.90 7.11 99.48 0.71 -12.19 16 7 C -0.54 -32.33 8.92 25.60 0.23 -32.10 16 8 H 0.05 3.25 6.75 -2.91 -0.02 3.23 16 9 C 0.01 0.55 5.46 29.10 0.16 0.71 16 10 C 0.52 23.99 7.82 87.66 0.69 24.67 16 11 O -0.59 -32.98 15.46 -3.04 -0.05 -33.02 16 12 N -0.72 -23.41 5.55 -463.09 -2.57 -25.98 16 13 C 0.14 4.18 4.96 86.38 0.43 4.61 16 14 C -0.14 -2.33 4.19 29.85 0.12 -2.21 16 15 C 0.52 11.58 7.71 87.66 0.68 12.26 16 16 O -0.58 -19.28 15.45 -3.04 -0.05 -19.33 16 17 N -0.62 -9.81 3.01 -816.44 -2.46 -12.28 16 18 C 0.07 0.52 6.56 86.50 0.57 1.09 16 19 C 0.04 0.34 7.00 72.22 0.51 0.84 16 20 O -0.40 -5.28 10.74 -148.98 -1.60 -6.88 16 21 C 0.05 0.65 6.99 72.10 0.50 1.15 16 22 C 0.07 1.11 6.64 86.37 0.57 1.68 16 23 H 0.27 14.60 8.31 -92.71 -0.77 13.83 16 24 H 0.05 2.40 8.14 -2.38 -0.02 2.38 16 25 H 0.05 2.40 8.14 -2.39 -0.02 2.38 16 26 H 0.42 9.82 8.47 -92.71 -0.79 9.03 16 27 H 0.04 1.57 8.10 -2.38 -0.02 1.55 16 28 H 0.04 1.58 8.10 -2.39 -0.02 1.56 16 29 H 0.14 1.44 7.67 -2.38 -0.02 1.43 16 30 H 0.13 1.49 8.00 -2.39 -0.02 1.47 16 31 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.12 0.38 6.06 -2.39 -0.01 0.37 16 33 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.13 0.44 8.14 -2.39 -0.02 0.42 16 35 H 0.05 0.68 8.14 -2.38 -0.02 0.66 16 36 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.08 1.63 7.08 -2.39 -0.02 1.61 16 38 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -82.61 319.76 0.78 -81.83 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: 0.28 Total: 7.31 kcal Atomic # 6 Polarization: 8.98 SS G_CDS: 4.92 Total: 13.90 kcal Atomic # 7 Polarization: -86.80 SS G_CDS: -4.75 Total: -91.55 kcal Atomic # 8 Polarization: -57.54 SS G_CDS: -1.69 Total: -59.24 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.75 kcal Total: -82.61 0.78 -81.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143188339.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.169 kcal (2) G-P(sol) polarization free energy of solvation -82.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds