Wall clock time and date at job start Mon Mar 30 2020 01:19:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47305 * 2 1 4 4 C 1.53007 * 109.47034 * 240.00625 * 2 1 3 5 5 O 1.45198 * 109.47197 * 120.00468 * 2 1 3 6 6 C 1.34588 * 117.00000 * 60.00167 * 5 2 1 7 7 O 1.21453 * 120.00087 * 359.97438 * 6 5 2 8 8 N 1.34784 * 119.99736 * 179.97438 * 6 5 2 9 9 C 1.46763 * 124.34846 * 179.97438 * 8 6 5 10 10 C 1.54480 * 105.47283 * 162.98616 * 9 8 6 11 11 H 1.09000 * 110.96655 * 267.30101 * 10 9 8 12 12 N 1.46498 * 110.96852 * 143.53733 * 10 9 8 13 13 C 1.36935 * 120.00001 * 154.99954 * 12 10 9 14 14 H 1.08005 * 119.99892 * 359.97438 * 13 12 10 15 15 C 1.38810 * 120.00206 * 179.97438 * 13 12 10 16 16 N 1.31623 * 119.99761 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00224 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.46941 * 359.97438 * 17 15 13 19 19 H 1.48502 * 109.47429 * 119.99696 * 17 15 13 20 20 H 1.48508 * 109.46939 * 239.99957 * 17 15 13 21 21 C 1.54629 * 101.76319 * 25.41596 * 10 9 8 22 22 C 1.34418 * 124.34614 * 359.69916 * 8 6 5 23 23 O 1.21227 * 124.94892 * 0.38713 * 22 8 6 24 24 H 1.08998 * 109.46985 * 299.99503 * 1 2 3 25 25 H 1.08999 * 109.46975 * 59.99890 * 1 2 3 26 26 H 1.09005 * 109.46891 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47422 * 180.02562 * 3 2 1 28 28 H 1.08999 * 109.47198 * 300.00533 * 3 2 1 29 29 H 1.09006 * 109.46544 * 60.00044 * 3 2 1 30 30 H 1.09005 * 109.46640 * 299.99922 * 4 2 1 31 31 H 1.08999 * 109.47202 * 59.99630 * 4 2 1 32 32 H 1.08997 * 109.47019 * 180.02562 * 4 2 1 33 33 H 1.08997 * 110.24668 * 281.98578 * 9 8 6 34 34 H 1.09004 * 110.24375 * 43.98298 * 9 8 6 35 35 H 0.96997 * 120.00240 * 334.99710 * 12 10 9 36 36 H 0.97002 * 119.99824 * 179.97438 * 16 15 13 37 37 H 1.09000 * 110.48716 * 93.88350 * 21 10 9 38 38 H 1.09005 * 110.48387 * 216.52544 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2494 5 8 2.0140 -0.6846 1.1855 6 6 1.6525 -1.9719 1.3381 7 8 0.9514 -2.5088 0.5041 8 7 2.0683 -2.6654 2.4164 9 6 1.7317 -4.0697 2.6782 10 6 2.7479 -4.5462 3.7396 11 1 3.6199 -5.0000 3.2687 12 7 2.1223 -5.4743 4.6849 13 6 2.8898 -6.3874 5.3574 14 1 3.9563 -6.4236 5.1906 15 6 2.2972 -7.2665 6.2534 16 7 0.9976 -7.2220 6.4570 17 14 3.3443 -8.5117 7.1713 18 1 4.7651 -8.3570 6.7677 19 1 3.2169 -8.2838 8.6332 20 1 2.8833 -9.8845 6.8423 21 6 3.1235 -3.2173 4.4353 22 6 2.8491 -2.1612 3.3875 23 8 3.2700 -1.0248 3.4203 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9564 -0.8899 29 1 1.6767 1.9563 0.8901 30 1 1.6766 -1.7488 -1.2494 31 1 1.6767 -0.2073 -2.1393 32 1 3.1300 -0.7215 -1.2491 33 1 0.7162 -4.1481 3.0663 34 1 1.8343 -4.6585 1.7666 35 1 1.1645 -5.4420 4.8344 36 1 0.5834 -7.8366 7.0828 37 1 2.5003 -3.0579 5.3152 38 1 4.1788 -3.2148 4.7085 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171685895.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:51 Heat of formation + Delta-G solvation = -98.495175 kcal Electronic energy + Delta-G solvation = -21343.115847 eV Core-core repulsion = 17993.570613 eV Total energy + Delta-G solvation = -3349.545235 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.49699 -39.75008 -37.28032 -36.35652 -34.52512 -33.94361 -31.87243 -29.33338 -27.55508 -27.52686 -27.21048 -24.33494 -23.19956 -21.38405 -20.63514 -19.12201 -17.76789 -17.59616 -16.82757 -16.66618 -15.55119 -15.22967 -14.90036 -14.59366 -14.23829 -14.03960 -13.72858 -13.58122 -13.27894 -12.96936 -12.66112 -12.58441 -12.26398 -12.04626 -12.03051 -11.68556 -11.58565 -11.42900 -11.03750 -10.91348 -10.77546 -10.47200 -10.40204 -10.18217 -9.96955 -9.77046 -9.44329 -9.09674 -7.24771 -5.95865 -3.28669 1.92798 1.95105 3.14974 3.34741 3.41109 3.43116 3.74350 4.38366 4.56242 4.61538 4.61945 4.75408 4.91458 5.18325 5.30994 5.33695 5.38335 5.46040 5.52982 5.54966 5.62023 5.69960 5.76895 5.86261 5.87350 5.94555 6.11648 6.12776 6.23809 6.28504 6.40990 6.55112 6.83088 7.55130 8.02512 8.10925 8.19936 9.32830 9.80994 10.16222 11.25650 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.044268 B = 0.003896 C = 0.003755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.359279 B = 7184.581346 C = 7455.595892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.128 3.872 3 C -0.138 4.138 4 C -0.184 4.184 5 O -0.334 6.334 6 C 0.661 3.339 7 O -0.541 6.541 8 N -0.558 5.558 9 C 0.100 3.900 10 C 0.176 3.824 11 H 0.082 0.918 12 N -0.708 5.708 13 C -0.255 4.255 14 H 0.077 0.923 15 C -0.005 4.005 16 N -0.926 5.926 17 Si 0.911 3.089 18 H -0.278 1.278 19 H -0.290 1.290 20 H -0.290 1.290 21 C -0.179 4.179 22 C 0.521 3.479 23 O -0.488 6.488 24 H 0.061 0.939 25 H 0.071 0.929 26 H 0.087 0.913 27 H 0.067 0.933 28 H 0.079 0.921 29 H 0.067 0.933 30 H 0.086 0.914 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.089 0.911 34 H 0.094 0.906 35 H 0.389 0.611 36 H 0.258 0.742 37 H 0.117 0.883 38 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.005 12.818 -12.168 17.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.091 3.909 3 C -0.195 4.195 4 C -0.241 4.241 5 O -0.247 6.247 6 C 0.419 3.581 7 O -0.429 6.429 8 N -0.308 5.308 9 C -0.022 4.022 10 C 0.063 3.937 11 H 0.100 0.900 12 N -0.348 5.348 13 C -0.385 4.385 14 H 0.095 0.905 15 C -0.202 4.202 16 N -0.573 5.573 17 Si 0.742 3.258 18 H -0.203 1.203 19 H -0.217 1.217 20 H -0.217 1.217 21 C -0.223 4.223 22 C 0.311 3.689 23 O -0.359 6.359 24 H 0.080 0.920 25 H 0.090 0.910 26 H 0.105 0.895 27 H 0.086 0.914 28 H 0.098 0.902 29 H 0.087 0.913 30 H 0.105 0.895 31 H 0.090 0.910 32 H 0.080 0.920 33 H 0.108 0.892 34 H 0.112 0.888 35 H 0.224 0.776 36 H 0.068 0.932 37 H 0.135 0.865 38 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 1.113 13.255 -12.418 18.197 hybrid contribution 0.033 -0.658 0.524 0.842 sum 1.146 12.597 -11.894 17.363 Atomic orbital electron populations 1.22523 0.93919 1.05040 1.02626 1.22198 0.94483 0.91956 0.82269 1.21824 1.02430 0.92291 1.02984 1.22521 1.01736 1.03375 0.96441 1.86583 1.70189 1.22323 1.45631 1.18115 0.77911 0.80968 0.81149 1.90894 1.39222 1.70573 1.42198 1.46423 1.48594 1.15294 1.20523 1.22887 1.01631 0.76103 1.01545 1.21070 0.94417 0.89136 0.89085 0.90001 1.42361 1.07975 1.37847 1.46574 1.19278 0.91576 1.09931 1.17719 0.90512 1.24804 0.95837 0.99661 0.99870 1.69669 1.08736 1.39997 1.38889 0.86073 0.79313 0.81006 0.79452 1.20319 1.21667 1.21675 1.23508 1.05225 0.95476 0.98079 1.21895 0.75545 0.88750 0.82672 1.90726 1.49737 1.19417 1.76003 0.92007 0.91004 0.89471 0.91356 0.90214 0.91345 0.89489 0.91002 0.92026 0.89247 0.88788 0.77611 0.93176 0.86547 0.87862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.09 8.37 37.16 0.31 -1.78 16 2 C 0.13 1.56 1.13 -90.61 -0.10 1.46 16 3 C -0.14 -1.32 8.85 37.16 0.33 -0.99 16 4 C -0.18 -2.05 8.37 37.16 0.31 -1.74 16 5 O -0.33 -5.34 8.31 -47.06 -0.39 -5.73 16 6 C 0.66 11.06 7.81 54.06 0.42 11.48 16 7 O -0.54 -9.25 12.10 -19.24 -0.23 -9.48 16 8 N -0.56 -9.16 2.99 -119.59 -0.36 -9.51 16 9 C 0.10 1.56 6.58 -3.12 -0.02 1.54 16 10 C 0.18 3.03 3.82 -66.30 -0.25 2.78 16 11 H 0.08 1.36 8.09 -51.93 -0.42 0.94 16 12 N -0.71 -15.58 5.20 -51.85 -0.27 -15.85 16 13 C -0.25 -6.36 9.96 -15.06 -0.15 -6.51 16 14 H 0.08 1.85 7.83 -52.48 -0.41 1.44 16 15 C 0.00 -0.12 5.50 -17.43 -0.10 -0.22 16 16 N -0.93 -26.01 13.06 55.49 0.72 -25.29 16 17 Si 0.91 20.91 29.55 -169.99 -5.02 15.89 16 18 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 19 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 21 C -0.18 -2.91 6.59 -26.74 -0.18 -3.08 16 22 C 0.52 8.91 7.94 -10.86 -0.09 8.82 16 23 O -0.49 -9.45 16.49 -14.78 -0.24 -9.70 16 24 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.09 1.17 5.88 -51.93 -0.31 0.87 16 27 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.09 1.15 5.88 -51.93 -0.31 0.84 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.09 1.41 7.80 -51.93 -0.40 1.00 16 34 H 0.09 1.39 8.10 -51.93 -0.42 0.97 16 35 H 0.39 9.12 7.62 -40.82 -0.31 8.81 16 36 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 37 H 0.12 1.97 8.08 -51.93 -0.42 1.55 16 38 H 0.10 1.57 8.14 -51.93 -0.42 1.15 16 LS Contribution 316.69 15.07 4.77 4.77 Total: -1.00 -29.72 316.69 -6.05 -35.76 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -5.52 Total: 7.37 kcal Atomic # 6 Polarization: 11.27 SS G_CDS: 0.49 Total: 11.76 kcal Atomic # 7 Polarization: -50.75 SS G_CDS: 0.10 Total: -50.65 kcal Atomic # 8 Polarization: -24.04 SS G_CDS: -0.87 Total: -24.90 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.72 -6.05 -35.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171685895.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.731 kcal (2) G-P(sol) polarization free energy of solvation -29.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds