Wall clock time and date at job start Mon Mar 30 2020 01:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47305 * 2 1 4 4 C 1.53007 * 109.47034 * 240.00625 * 2 1 3 5 5 O 1.45198 * 109.47197 * 120.00468 * 2 1 3 6 6 C 1.34588 * 117.00000 * 60.00167 * 5 2 1 7 7 O 1.21453 * 120.00087 * 359.97438 * 6 5 2 8 8 N 1.34784 * 119.99736 * 179.97438 * 6 5 2 9 9 C 1.46763 * 124.34846 * 179.97438 * 8 6 5 10 10 C 1.54480 * 105.47283 * 162.98616 * 9 8 6 11 11 H 1.09000 * 110.96655 * 267.30101 * 10 9 8 12 12 N 1.46498 * 110.96852 * 143.53733 * 10 9 8 13 13 C 1.36935 * 120.00001 * 154.99954 * 12 10 9 14 14 H 1.08005 * 119.99892 * 359.97438 * 13 12 10 15 15 C 1.38810 * 120.00206 * 179.97438 * 13 12 10 16 16 N 1.31623 * 119.99761 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00224 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.46941 * 359.97438 * 17 15 13 19 19 H 1.48502 * 109.47429 * 119.99696 * 17 15 13 20 20 H 1.48508 * 109.46939 * 239.99957 * 17 15 13 21 21 C 1.54629 * 101.76319 * 25.41596 * 10 9 8 22 22 C 1.34418 * 124.34614 * 359.69916 * 8 6 5 23 23 O 1.21227 * 124.94892 * 0.38713 * 22 8 6 24 24 H 1.08998 * 109.46985 * 299.99503 * 1 2 3 25 25 H 1.08999 * 109.46975 * 59.99890 * 1 2 3 26 26 H 1.09005 * 109.46891 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47422 * 180.02562 * 3 2 1 28 28 H 1.08999 * 109.47198 * 300.00533 * 3 2 1 29 29 H 1.09006 * 109.46544 * 60.00044 * 3 2 1 30 30 H 1.09005 * 109.46640 * 299.99922 * 4 2 1 31 31 H 1.08999 * 109.47202 * 59.99630 * 4 2 1 32 32 H 1.08997 * 109.47019 * 180.02562 * 4 2 1 33 33 H 1.08997 * 110.24668 * 281.98578 * 9 8 6 34 34 H 1.09004 * 110.24375 * 43.98298 * 9 8 6 35 35 H 0.96997 * 120.00240 * 334.99710 * 12 10 9 36 36 H 0.97002 * 119.99824 * 179.97438 * 16 15 13 37 37 H 1.09000 * 110.48716 * 93.88350 * 21 10 9 38 38 H 1.09005 * 110.48387 * 216.52544 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2494 5 8 2.0140 -0.6846 1.1855 6 6 1.6525 -1.9719 1.3381 7 8 0.9514 -2.5088 0.5041 8 7 2.0683 -2.6654 2.4164 9 6 1.7317 -4.0697 2.6782 10 6 2.7479 -4.5462 3.7396 11 1 3.6199 -5.0000 3.2687 12 7 2.1223 -5.4743 4.6849 13 6 2.8898 -6.3874 5.3574 14 1 3.9563 -6.4236 5.1906 15 6 2.2972 -7.2665 6.2534 16 7 0.9976 -7.2220 6.4570 17 14 3.3443 -8.5117 7.1713 18 1 4.7651 -8.3570 6.7677 19 1 3.2169 -8.2838 8.6332 20 1 2.8833 -9.8845 6.8423 21 6 3.1235 -3.2173 4.4353 22 6 2.8491 -2.1612 3.3875 23 8 3.2700 -1.0248 3.4203 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9564 -0.8899 29 1 1.6767 1.9563 0.8901 30 1 1.6766 -1.7488 -1.2494 31 1 1.6767 -0.2073 -2.1393 32 1 3.1300 -0.7215 -1.2491 33 1 0.7162 -4.1481 3.0663 34 1 1.8343 -4.6585 1.7666 35 1 1.1645 -5.4420 4.8344 36 1 0.5834 -7.8366 7.0828 37 1 2.5003 -3.0579 5.3152 38 1 4.1788 -3.2148 4.7085 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171685895.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:50 Heat of formation + Delta-G solvation = -116.751773 kcal Electronic energy + Delta-G solvation = -21343.907513 eV Core-core repulsion = 17993.570613 eV Total energy + Delta-G solvation = -3350.336900 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.79701 -41.00848 -38.58797 -37.74683 -36.03538 -35.12653 -33.53930 -30.97751 -28.64790 -28.40897 -28.32667 -26.00440 -24.69219 -22.62921 -21.99480 -20.30270 -19.38152 -19.11767 -18.21056 -17.81171 -16.90152 -16.51606 -16.31391 -15.98354 -15.51378 -15.39157 -15.23455 -14.90737 -14.56294 -14.42346 -14.03467 -13.41648 -13.19643 -13.15846 -12.97608 -12.93931 -12.87202 -12.66500 -12.58385 -12.51123 -12.23681 -11.95486 -11.83900 -11.56213 -11.49592 -11.20881 -10.92025 -10.76128 -9.10183 -7.93902 -5.25087 0.58217 0.73770 1.54216 1.56143 1.64604 1.81896 2.54566 2.57405 3.19369 3.35780 3.63058 3.67178 3.74001 3.87328 3.89073 4.02671 4.31567 4.35512 4.52266 4.57459 4.58524 4.67065 4.72300 4.79923 4.82988 4.85436 4.97325 5.10021 5.14063 5.22934 5.23404 5.31634 5.53318 5.59194 6.25927 6.65671 6.84188 7.35185 8.00466 8.25254 9.28789 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.044268 B = 0.003896 C = 0.003755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.359279 B = 7184.581346 C = 7455.595892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.112 3.888 3 C -0.134 4.134 4 C -0.178 4.178 5 O -0.349 6.349 6 C 0.658 3.342 7 O -0.547 6.547 8 N -0.558 5.558 9 C 0.108 3.892 10 C 0.177 3.823 11 H 0.095 0.905 12 N -0.719 5.719 13 C -0.243 4.243 14 H 0.088 0.912 15 C -0.066 4.066 16 N -0.965 5.965 17 Si 0.970 3.030 18 H -0.262 1.262 19 H -0.298 1.298 20 H -0.298 1.298 21 C -0.166 4.166 22 C 0.528 3.472 23 O -0.511 6.511 24 H 0.058 0.942 25 H 0.101 0.899 26 H 0.062 0.938 27 H 0.065 0.935 28 H 0.112 0.888 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.101 0.899 32 H 0.060 0.940 33 H 0.088 0.912 34 H 0.105 0.895 35 H 0.379 0.621 36 H 0.251 0.749 37 H 0.111 0.889 38 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.971 13.809 -13.416 19.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.076 3.924 3 C -0.190 4.190 4 C -0.235 4.235 5 O -0.263 6.263 6 C 0.415 3.585 7 O -0.436 6.436 8 N -0.308 5.308 9 C -0.013 4.013 10 C 0.066 3.934 11 H 0.113 0.887 12 N -0.358 5.358 13 C -0.374 4.374 14 H 0.106 0.894 15 C -0.259 4.259 16 N -0.615 5.615 17 Si 0.799 3.201 18 H -0.186 1.186 19 H -0.225 1.225 20 H -0.225 1.225 21 C -0.209 4.209 22 C 0.319 3.681 23 O -0.383 6.383 24 H 0.077 0.923 25 H 0.120 0.880 26 H 0.081 0.919 27 H 0.084 0.916 28 H 0.131 0.869 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.119 0.881 32 H 0.079 0.921 33 H 0.106 0.894 34 H 0.124 0.876 35 H 0.213 0.787 36 H 0.060 0.940 37 H 0.129 0.871 38 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 2.113 14.276 -13.709 19.905 hybrid contribution -0.265 -0.849 0.791 1.190 sum 1.848 13.427 -12.918 18.724 Atomic orbital electron populations 1.22485 0.93365 1.03819 1.03977 1.22710 0.95169 0.93081 0.81467 1.21873 1.02275 0.90533 1.04359 1.22478 1.01666 1.02223 0.97170 1.86593 1.70419 1.21765 1.47516 1.18207 0.77848 0.81396 0.80999 1.90896 1.39457 1.70874 1.42365 1.46419 1.48398 1.15439 1.20530 1.22741 1.01011 0.75983 1.01529 1.21176 0.94884 0.88717 0.88621 0.88677 1.42455 1.07512 1.38335 1.47468 1.19681 0.92260 1.09108 1.16394 0.89390 1.25515 0.96755 1.02031 1.01644 1.69806 1.10280 1.41209 1.40201 0.85135 0.78726 0.78497 0.77710 1.18644 1.22526 1.22502 1.23324 1.06024 0.94197 0.97388 1.21922 0.75131 0.88431 0.82664 1.90716 1.50780 1.20343 1.76506 0.92315 0.88005 0.91864 0.91632 0.86948 0.91821 0.91805 0.88055 0.92069 0.89394 0.87638 0.78730 0.93964 0.87089 0.86350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.79 8.37 71.98 0.60 -3.18 16 2 C 0.11 2.54 1.13 -10.79 -0.01 2.53 16 3 C -0.13 -2.24 8.85 71.98 0.64 -1.60 16 4 C -0.18 -3.65 8.37 71.98 0.60 -3.05 16 5 O -0.35 -10.90 8.31 -48.39 -0.40 -11.30 16 6 C 0.66 21.59 7.81 129.79 1.01 22.60 16 7 O -0.55 -18.46 12.10 19.99 0.24 -18.22 16 8 N -0.56 -17.81 2.99 -881.33 -2.63 -20.45 16 9 C 0.11 3.28 6.58 86.83 0.57 3.85 16 10 C 0.18 5.83 3.82 46.05 0.18 6.01 16 11 H 0.10 2.94 8.09 -2.39 -0.02 2.92 16 12 N -0.72 -31.08 5.20 -317.95 -1.65 -32.73 16 13 C -0.24 -11.87 9.96 84.03 0.84 -11.04 16 14 H 0.09 4.03 7.83 -2.91 -0.02 4.01 16 15 C -0.07 -3.49 5.50 84.86 0.47 -3.02 16 16 N -0.97 -54.90 13.06 21.65 0.28 -54.61 16 17 Si 0.97 42.83 29.55 68.60 2.03 44.86 16 18 H -0.26 -10.74 7.11 99.48 0.71 -10.04 16 19 H -0.30 -13.41 7.11 99.48 0.71 -12.70 16 20 H -0.30 -13.38 7.11 99.48 0.71 -12.68 16 21 C -0.17 -5.15 6.59 30.59 0.20 -4.95 16 22 C 0.53 17.48 7.94 87.90 0.70 18.18 16 23 O -0.51 -19.36 16.49 16.62 0.27 -19.09 16 24 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.06 1.66 5.88 -2.38 -0.01 1.64 16 27 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 30 H 0.06 1.62 5.88 -2.38 -0.01 1.61 16 31 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.09 2.73 7.80 -2.39 -0.02 2.71 16 34 H 0.11 2.98 8.10 -2.39 -0.02 2.96 16 35 H 0.38 17.84 7.62 -92.71 -0.71 17.13 16 36 H 0.25 14.02 8.31 -92.71 -0.77 13.25 16 37 H 0.11 3.64 8.08 -2.39 -0.02 3.63 16 38 H 0.12 3.34 8.14 -2.38 -0.02 3.32 16 Total: -1.00 -63.05 316.69 4.29 -58.76 By element: Atomic # 1 Polarization: 26.09 SS G_CDS: 0.36 Total: 26.45 kcal Atomic # 6 Polarization: 20.54 SS G_CDS: 5.79 Total: 26.33 kcal Atomic # 7 Polarization: -103.79 SS G_CDS: -4.00 Total: -107.79 kcal Atomic # 8 Polarization: -48.72 SS G_CDS: 0.11 Total: -48.60 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Total: -63.05 4.29 -58.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171685895.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.995 kcal (2) G-P(sol) polarization free energy of solvation -63.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds