Wall clock time and date at job start Mon Mar 30 2020 01:19:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52993 * 109.46838 * 2 1 4 4 C 1.53001 * 109.47091 * 240.00269 * 2 1 3 5 5 O 1.45203 * 109.47021 * 119.99832 * 2 1 3 6 6 C 1.34591 * 116.99859 * 60.00327 * 5 2 1 7 7 O 1.21459 * 119.99898 * 359.97438 * 6 5 2 8 8 N 1.34775 * 120.00010 * 179.97438 * 6 5 2 9 9 C 1.46761 * 124.35096 * 180.02562 * 8 6 5 10 10 C 1.54474 * 105.47258 * 197.03395 * 9 8 6 11 11 H 1.09007 * 110.96855 * 92.70203 * 10 9 8 12 12 N 1.46501 * 110.97362 * 216.46463 * 10 9 8 13 13 C 1.36936 * 120.00543 * 198.83630 * 12 10 9 14 14 H 1.08001 * 119.99998 * 359.97438 * 13 12 10 15 15 C 1.38814 * 120.00222 * 179.97438 * 13 12 10 16 16 N 1.31624 * 119.99974 * 0.02562 * 15 13 12 17 17 Si 1.86794 * 119.99870 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46891 * 90.00287 * 17 15 13 19 19 H 1.48504 * 109.47033 * 209.99981 * 17 15 13 20 20 H 1.48497 * 109.47532 * 330.00174 * 17 15 13 21 21 C 1.54625 * 101.76763 * 334.58255 * 10 9 8 22 22 C 1.34417 * 124.34610 * 0.02562 * 8 6 5 23 23 O 1.21235 * 124.94853 * 359.54327 * 22 8 6 24 24 H 1.09002 * 109.47214 * 299.99540 * 1 2 3 25 25 H 1.08996 * 109.47195 * 59.99918 * 1 2 3 26 26 H 1.09004 * 109.46557 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47240 * 180.02562 * 3 2 1 28 28 H 1.09005 * 109.47457 * 300.00018 * 3 2 1 29 29 H 1.09000 * 109.47215 * 59.99851 * 3 2 1 30 30 H 1.09009 * 109.46692 * 299.99853 * 4 2 1 31 31 H 1.08999 * 109.47360 * 59.99328 * 4 2 1 32 32 H 1.08997 * 109.46924 * 180.02562 * 4 2 1 33 33 H 1.08998 * 110.24663 * 316.03691 * 9 8 6 34 34 H 1.09002 * 110.24657 * 78.03765 * 9 8 6 35 35 H 0.97007 * 119.99743 * 18.83148 * 12 10 9 36 36 H 0.96994 * 120.00132 * 179.97438 * 16 15 13 37 37 H 1.09001 * 110.48978 * 266.11806 * 21 10 9 38 38 H 1.09000 * 110.49031 * 143.47236 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 8 2.0141 -0.6845 1.1856 6 6 1.6525 -1.9719 1.3383 7 8 0.9514 -2.5087 0.5043 8 7 2.0682 -2.6653 2.4166 9 6 1.7324 -4.0698 2.6779 10 6 2.0365 -4.2945 4.1757 11 1 1.1477 -4.1259 4.7838 12 7 2.5796 -5.6356 4.4051 13 6 2.5559 -6.1782 5.6622 14 1 2.1373 -5.6173 6.4846 15 6 3.0700 -7.4492 5.8794 16 7 3.5807 -8.1327 4.8771 17 14 3.0384 -8.1890 7.5943 18 1 1.7712 -8.9390 7.7865 19 1 4.1898 -9.1128 7.7562 20 1 3.1290 -7.1034 8.6035 21 6 3.1058 -3.2109 4.4463 22 6 2.8438 -2.1592 3.3909 23 8 3.2714 -1.0251 3.4195 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3632 -1.0277 0.0005 27 1 3.1299 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6767 -1.7489 -1.2492 31 1 1.6767 -0.2074 -2.1393 32 1 3.1300 -0.7216 -1.2490 33 1 0.6763 -4.2490 2.4764 34 1 2.3507 -4.7258 2.0650 35 1 2.9559 -6.1394 3.6664 36 1 3.9402 -9.0207 5.0289 37 1 4.1072 -3.6257 4.3309 38 1 2.9789 -2.7903 5.4439 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171685896.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:54 Heat of formation + Delta-G solvation = -98.139115 kcal Electronic energy + Delta-G solvation = -21348.210138 eV Core-core repulsion = 17998.680343 eV Total energy + Delta-G solvation = -3349.529795 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.50348 -39.75384 -37.28456 -36.35997 -34.52647 -33.94329 -31.86462 -29.31876 -27.55788 -27.52930 -27.23643 -24.32449 -23.20925 -21.38230 -20.62936 -19.13134 -17.78003 -17.54486 -16.83737 -16.67175 -15.56406 -15.23534 -14.90375 -14.59662 -14.24371 -14.04017 -13.72102 -13.58678 -13.26271 -12.97434 -12.70114 -12.60222 -12.26939 -12.04976 -12.03337 -11.67091 -11.58768 -11.41825 -11.01554 -10.90120 -10.78203 -10.47559 -10.40463 -10.20476 -9.95510 -9.76833 -9.45685 -9.08018 -7.23649 -5.94921 -3.27801 1.92204 1.94597 3.14454 3.35522 3.41422 3.42815 3.73777 4.38768 4.55980 4.61205 4.61709 4.75174 4.90342 5.17963 5.30738 5.33423 5.38180 5.45551 5.52872 5.54806 5.61716 5.69687 5.75805 5.85949 5.87285 5.95503 6.11404 6.12545 6.23369 6.28120 6.40826 6.56688 6.82511 7.55410 8.02073 8.10269 8.20945 9.33728 9.81998 10.17262 11.26621 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.044614 B = 0.003904 C = 0.003755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.453791 B = 7169.505329 C = 7454.232065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.128 3.872 3 C -0.138 4.138 4 C -0.184 4.184 5 O -0.333 6.333 6 C 0.661 3.339 7 O -0.541 6.541 8 N -0.558 5.558 9 C 0.102 3.898 10 C 0.176 3.824 11 H 0.079 0.921 12 N -0.709 5.709 13 C -0.254 4.254 14 H 0.076 0.924 15 C -0.004 4.004 16 N -0.927 5.927 17 Si 0.911 3.089 18 H -0.288 1.288 19 H -0.290 1.290 20 H -0.280 1.280 21 C -0.179 4.179 22 C 0.521 3.479 23 O -0.487 6.487 24 H 0.061 0.939 25 H 0.071 0.929 26 H 0.086 0.914 27 H 0.068 0.932 28 H 0.079 0.921 29 H 0.067 0.933 30 H 0.086 0.914 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.389 0.611 36 H 0.259 0.741 37 H 0.117 0.883 38 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.322 14.641 -9.044 17.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.091 3.909 3 C -0.195 4.195 4 C -0.241 4.241 5 O -0.247 6.247 6 C 0.419 3.581 7 O -0.429 6.429 8 N -0.308 5.308 9 C -0.019 4.019 10 C 0.063 3.937 11 H 0.096 0.904 12 N -0.350 5.350 13 C -0.385 4.385 14 H 0.094 0.906 15 C -0.202 4.202 16 N -0.574 5.574 17 Si 0.742 3.258 18 H -0.215 1.215 19 H -0.217 1.217 20 H -0.205 1.205 21 C -0.222 4.222 22 C 0.311 3.689 23 O -0.359 6.359 24 H 0.080 0.920 25 H 0.090 0.910 26 H 0.105 0.895 27 H 0.087 0.913 28 H 0.098 0.902 29 H 0.086 0.914 30 H 0.105 0.895 31 H 0.090 0.910 32 H 0.080 0.920 33 H 0.113 0.887 34 H 0.108 0.892 35 H 0.224 0.776 36 H 0.069 0.931 37 H 0.135 0.865 38 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -4.330 15.138 -9.208 18.240 hybrid contribution 0.148 -0.657 0.510 0.845 sum -4.182 14.481 -8.698 17.402 Atomic orbital electron populations 1.22522 0.93924 1.05014 1.02613 1.22199 0.94466 0.91961 0.82276 1.21823 1.02466 0.92276 1.02968 1.22522 1.01785 1.03377 0.96425 1.86585 1.70174 1.22323 1.45628 1.18099 0.77882 0.80946 0.81182 1.90896 1.39292 1.70621 1.42078 1.46398 1.48993 1.15025 1.20424 1.22779 1.03144 0.76600 0.99381 1.21071 0.94823 0.87058 0.90741 0.90360 1.42345 1.71089 1.12082 1.09480 1.19210 1.34694 0.98374 0.86180 0.90593 1.24799 1.00608 0.97016 0.97738 1.69655 1.44801 1.12819 1.30075 0.86141 0.77240 0.78977 0.83483 1.21483 1.21658 1.20509 1.23489 1.05032 0.96100 0.97581 1.21908 0.75516 0.88605 0.82836 1.90728 1.49162 1.19506 1.76455 0.92027 0.90998 0.89481 0.91343 0.90208 0.91353 0.89478 0.90991 0.92005 0.88730 0.89194 0.77610 0.93136 0.86501 0.87856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.04 8.37 37.16 0.31 -1.73 16 2 C 0.13 1.56 1.13 -90.62 -0.10 1.46 16 3 C -0.14 -1.32 8.85 37.15 0.33 -0.99 16 4 C -0.18 -2.08 8.37 37.16 0.31 -1.77 16 5 O -0.33 -5.33 8.31 -47.07 -0.39 -5.72 16 6 C 0.66 11.04 7.81 54.05 0.42 11.46 16 7 O -0.54 -9.21 12.10 -19.24 -0.23 -9.45 16 8 N -0.56 -9.15 2.99 -119.59 -0.36 -9.51 16 9 C 0.10 1.59 6.57 -3.13 -0.02 1.57 16 10 C 0.18 3.03 3.79 -66.30 -0.25 2.78 16 11 H 0.08 1.31 8.13 -51.93 -0.42 0.88 16 12 N -0.71 -15.65 5.23 -51.85 -0.27 -15.92 16 13 C -0.25 -6.36 9.98 -15.06 -0.15 -6.51 16 14 H 0.08 1.83 7.83 -52.49 -0.41 1.42 16 15 C 0.00 -0.12 5.50 -17.43 -0.10 -0.21 16 16 N -0.93 -26.06 13.06 55.49 0.72 -25.34 16 17 Si 0.91 20.94 29.55 -169.99 -5.02 15.92 16 18 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 21 C -0.18 -2.91 6.59 -26.74 -0.18 -3.09 16 22 C 0.52 8.93 7.95 -10.86 -0.09 8.84 16 23 O -0.49 -9.46 16.49 -14.79 -0.24 -9.71 16 24 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.09 1.15 5.88 -51.93 -0.31 0.84 16 27 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.09 1.17 5.88 -51.92 -0.31 0.86 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.09 1.39 8.10 -51.93 -0.42 0.97 16 34 H 0.09 1.41 7.77 -51.93 -0.40 1.00 16 35 H 0.39 9.13 7.56 -40.82 -0.31 8.82 16 36 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 37 H 0.12 2.00 8.08 -51.93 -0.42 1.58 16 38 H 0.10 1.58 8.14 -51.93 -0.42 1.16 16 LS Contribution 316.65 15.07 4.77 4.77 Total: -1.00 -29.74 316.65 -6.05 -35.79 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -5.51 Total: 7.35 kcal Atomic # 6 Polarization: 11.32 SS G_CDS: 0.49 Total: 11.81 kcal Atomic # 7 Polarization: -50.86 SS G_CDS: 0.10 Total: -50.76 kcal Atomic # 8 Polarization: -24.01 SS G_CDS: -0.87 Total: -24.87 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.74 -6.05 -35.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171685896.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.352 kcal (2) G-P(sol) polarization free energy of solvation -29.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds