Wall clock time and date at job start Mon Mar 30 2020 01:19:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52993 * 109.46838 * 2 1 4 4 C 1.53001 * 109.47091 * 240.00269 * 2 1 3 5 5 O 1.45203 * 109.47021 * 119.99832 * 2 1 3 6 6 C 1.34591 * 116.99859 * 60.00327 * 5 2 1 7 7 O 1.21459 * 119.99898 * 359.97438 * 6 5 2 8 8 N 1.34775 * 120.00010 * 179.97438 * 6 5 2 9 9 C 1.46761 * 124.35096 * 180.02562 * 8 6 5 10 10 C 1.54474 * 105.47258 * 197.03395 * 9 8 6 11 11 H 1.09007 * 110.96855 * 92.70203 * 10 9 8 12 12 N 1.46501 * 110.97362 * 216.46463 * 10 9 8 13 13 C 1.36936 * 120.00543 * 198.83630 * 12 10 9 14 14 H 1.08001 * 119.99998 * 359.97438 * 13 12 10 15 15 C 1.38814 * 120.00222 * 179.97438 * 13 12 10 16 16 N 1.31624 * 119.99974 * 0.02562 * 15 13 12 17 17 Si 1.86794 * 119.99870 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46891 * 90.00287 * 17 15 13 19 19 H 1.48504 * 109.47033 * 209.99981 * 17 15 13 20 20 H 1.48497 * 109.47532 * 330.00174 * 17 15 13 21 21 C 1.54625 * 101.76763 * 334.58255 * 10 9 8 22 22 C 1.34417 * 124.34610 * 0.02562 * 8 6 5 23 23 O 1.21235 * 124.94853 * 359.54327 * 22 8 6 24 24 H 1.09002 * 109.47214 * 299.99540 * 1 2 3 25 25 H 1.08996 * 109.47195 * 59.99918 * 1 2 3 26 26 H 1.09004 * 109.46557 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47240 * 180.02562 * 3 2 1 28 28 H 1.09005 * 109.47457 * 300.00018 * 3 2 1 29 29 H 1.09000 * 109.47215 * 59.99851 * 3 2 1 30 30 H 1.09009 * 109.46692 * 299.99853 * 4 2 1 31 31 H 1.08999 * 109.47360 * 59.99328 * 4 2 1 32 32 H 1.08997 * 109.46924 * 180.02562 * 4 2 1 33 33 H 1.08998 * 110.24663 * 316.03691 * 9 8 6 34 34 H 1.09002 * 110.24657 * 78.03765 * 9 8 6 35 35 H 0.97007 * 119.99743 * 18.83148 * 12 10 9 36 36 H 0.96994 * 120.00132 * 179.97438 * 16 15 13 37 37 H 1.09001 * 110.48978 * 266.11806 * 21 10 9 38 38 H 1.09000 * 110.49031 * 143.47236 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 8 2.0141 -0.6845 1.1856 6 6 1.6525 -1.9719 1.3383 7 8 0.9514 -2.5087 0.5043 8 7 2.0682 -2.6653 2.4166 9 6 1.7324 -4.0698 2.6779 10 6 2.0365 -4.2945 4.1757 11 1 1.1477 -4.1259 4.7838 12 7 2.5796 -5.6356 4.4051 13 6 2.5559 -6.1782 5.6622 14 1 2.1373 -5.6173 6.4846 15 6 3.0700 -7.4492 5.8794 16 7 3.5807 -8.1327 4.8771 17 14 3.0384 -8.1890 7.5943 18 1 1.7712 -8.9390 7.7865 19 1 4.1898 -9.1128 7.7562 20 1 3.1290 -7.1034 8.6035 21 6 3.1058 -3.2109 4.4463 22 6 2.8438 -2.1592 3.3909 23 8 3.2714 -1.0251 3.4195 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3632 -1.0277 0.0005 27 1 3.1299 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6767 -1.7489 -1.2492 31 1 1.6767 -0.2074 -2.1393 32 1 3.1300 -0.7216 -1.2490 33 1 0.6763 -4.2490 2.4764 34 1 2.3507 -4.7258 2.0650 35 1 2.9559 -6.1394 3.6664 36 1 3.9402 -9.0207 5.0289 37 1 4.1072 -3.6257 4.3309 38 1 2.9789 -2.7903 5.4439 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171685896.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:53 Heat of formation + Delta-G solvation = -116.420241 kcal Electronic energy + Delta-G solvation = -21349.002867 eV Core-core repulsion = 17998.680343 eV Total energy + Delta-G solvation = -3350.322524 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.80191 -41.01106 -38.59131 -37.74939 -36.03491 -35.12596 -33.53599 -30.96542 -28.67420 -28.40865 -28.32834 -25.99275 -24.70225 -22.62492 -21.99501 -20.31258 -19.34453 -19.11378 -18.22319 -17.81497 -16.91023 -16.51802 -16.31781 -15.98874 -15.52091 -15.39661 -15.21862 -14.89566 -14.56643 -14.44935 -14.07608 -13.41600 -13.18917 -13.16016 -12.97508 -12.93982 -12.82631 -12.66182 -12.58367 -12.50295 -12.26751 -11.97074 -11.82843 -11.56720 -11.49648 -11.20557 -10.91284 -10.76331 -9.09393 -7.93376 -5.24573 0.57863 0.73224 1.55270 1.56085 1.63783 1.81447 2.54113 2.57739 3.18732 3.36214 3.60803 3.67072 3.73990 3.87503 3.89081 4.02260 4.31838 4.35108 4.51887 4.57294 4.58613 4.66869 4.72316 4.79944 4.82991 4.84615 4.96939 5.10021 5.14947 5.22917 5.23461 5.31448 5.52947 5.59233 6.26359 6.65132 6.83797 7.35652 8.01110 8.25921 9.29197 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.044614 B = 0.003904 C = 0.003755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.453791 B = 7169.505329 C = 7454.232065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.112 3.888 3 C -0.134 4.134 4 C -0.179 4.179 5 O -0.349 6.349 6 C 0.658 3.342 7 O -0.547 6.547 8 N -0.558 5.558 9 C 0.110 3.890 10 C 0.177 3.823 11 H 0.092 0.908 12 N -0.720 5.720 13 C -0.243 4.243 14 H 0.088 0.912 15 C -0.066 4.066 16 N -0.966 5.966 17 Si 0.970 3.030 18 H -0.289 1.289 19 H -0.301 1.301 20 H -0.267 1.267 21 C -0.166 4.166 22 C 0.528 3.472 23 O -0.510 6.510 24 H 0.060 0.940 25 H 0.101 0.899 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.112 0.888 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.101 0.899 32 H 0.058 0.942 33 H 0.107 0.893 34 H 0.089 0.911 35 H 0.379 0.621 36 H 0.252 0.748 37 H 0.110 0.890 38 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.130 16.284 -9.157 19.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.076 3.924 3 C -0.190 4.190 4 C -0.236 4.236 5 O -0.263 6.263 6 C 0.416 3.584 7 O -0.436 6.436 8 N -0.308 5.308 9 C -0.010 4.010 10 C 0.066 3.934 11 H 0.110 0.890 12 N -0.360 5.360 13 C -0.375 4.375 14 H 0.105 0.895 15 C -0.259 4.259 16 N -0.615 5.615 17 Si 0.799 3.201 18 H -0.216 1.216 19 H -0.228 1.228 20 H -0.191 1.191 21 C -0.209 4.209 22 C 0.319 3.681 23 O -0.383 6.383 24 H 0.079 0.921 25 H 0.119 0.881 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.131 0.869 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.120 0.880 32 H 0.077 0.923 33 H 0.125 0.875 34 H 0.107 0.893 35 H 0.213 0.787 36 H 0.060 0.940 37 H 0.128 0.872 38 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -5.167 16.835 -9.323 19.926 hybrid contribution 0.352 -1.038 0.454 1.187 sum -4.815 15.797 -8.869 18.745 Atomic orbital electron populations 1.22479 0.93102 1.03888 1.04066 1.22710 0.95350 0.93017 0.81345 1.21872 1.02183 0.90554 1.04440 1.22485 1.01546 1.02250 0.97364 1.86595 1.70427 1.21778 1.47493 1.18191 0.77825 0.81368 0.81031 1.90898 1.39542 1.70911 1.42203 1.46398 1.48800 1.15154 1.20430 1.22655 1.03871 0.76312 0.98192 1.21177 0.95135 0.85034 0.92062 0.89001 1.42443 1.71488 1.13662 1.08392 1.19619 1.32345 0.98035 0.87458 0.89456 1.25512 1.01712 0.98011 1.00695 1.69796 1.46996 1.12909 1.31812 0.85200 0.76429 0.78174 0.80269 1.21616 1.22841 1.19137 1.23309 1.04117 0.95297 0.98161 1.21924 0.75084 0.88248 0.82887 1.90718 1.50150 1.20437 1.77019 0.92070 0.88054 0.91782 0.91832 0.86941 0.91630 0.91855 0.87993 0.92329 0.87487 0.89308 0.78716 0.93964 0.87162 0.86379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.64 8.37 71.98 0.60 -3.03 16 2 C 0.11 2.54 1.13 -10.79 -0.01 2.53 16 3 C -0.13 -2.24 8.85 71.98 0.64 -1.60 16 4 C -0.18 -3.78 8.37 71.98 0.60 -3.18 16 5 O -0.35 -10.88 8.31 -48.42 -0.40 -11.29 16 6 C 0.66 21.55 7.81 129.79 1.01 22.56 16 7 O -0.55 -18.37 12.10 19.97 0.24 -18.13 16 8 N -0.56 -17.80 2.99 -881.34 -2.63 -20.43 16 9 C 0.11 3.33 6.57 86.83 0.57 3.90 16 10 C 0.18 5.84 3.79 46.05 0.17 6.01 16 11 H 0.09 2.85 8.13 -2.38 -0.02 2.83 16 12 N -0.72 -31.22 5.23 -317.95 -1.66 -32.89 16 13 C -0.24 -11.91 9.98 84.03 0.84 -11.07 16 14 H 0.09 4.01 7.83 -2.91 -0.02 3.98 16 15 C -0.07 -3.49 5.50 84.86 0.47 -3.02 16 16 N -0.97 -54.97 13.06 21.65 0.28 -54.69 16 17 Si 0.97 42.88 29.55 68.60 2.03 44.91 16 18 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 19 H -0.30 -13.74 7.11 99.48 0.71 -13.04 16 20 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 21 C -0.17 -5.18 6.59 30.59 0.20 -4.97 16 22 C 0.53 17.54 7.95 87.90 0.70 18.24 16 23 O -0.51 -19.41 16.49 16.60 0.27 -19.13 16 24 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.06 1.62 5.88 -2.39 -0.01 1.61 16 27 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.11 1.14 8.14 -2.38 -0.02 1.12 16 29 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.06 1.65 5.88 -2.38 -0.01 1.64 16 31 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.11 2.99 8.10 -2.39 -0.02 2.97 16 34 H 0.09 2.74 7.77 -2.39 -0.02 2.72 16 35 H 0.38 17.86 7.56 -92.70 -0.70 17.16 16 36 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 37 H 0.11 3.68 8.08 -2.39 -0.02 3.66 16 38 H 0.12 3.36 8.14 -2.39 -0.02 3.34 16 Total: -1.00 -63.07 316.65 4.29 -58.79 By element: Atomic # 1 Polarization: 26.13 SS G_CDS: 0.37 Total: 26.49 kcal Atomic # 6 Polarization: 20.57 SS G_CDS: 5.79 Total: 26.36 kcal Atomic # 7 Polarization: -103.99 SS G_CDS: -4.01 Total: -108.00 kcal Atomic # 8 Polarization: -48.66 SS G_CDS: 0.11 Total: -48.54 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Total: -63.07 4.29 -58.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171685896.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.633 kcal (2) G-P(sol) polarization free energy of solvation -63.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds