Wall clock time and date at job start Mon Mar 30 2020 02:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 O 1.42905 * 109.47264 * 119.99945 * 2 1 3 5 5 C 1.42890 * 113.99966 * 270.00126 * 4 2 1 6 6 C 1.53003 * 109.47357 * 179.97438 * 5 4 2 7 7 C 1.50694 * 109.47414 * 179.97438 * 6 5 4 8 8 H 1.08005 * 120.00069 * 0.02562 * 7 6 5 9 9 C 1.37879 * 120.00021 * 179.97438 * 7 6 5 10 10 N 1.31504 * 120.00039 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 119.99903 * 180.02562 * 9 7 6 12 12 H 1.48505 * 109.47094 * 90.00246 * 11 9 7 13 13 H 1.48503 * 109.47101 * 210.00102 * 11 9 7 14 14 H 1.48503 * 109.47643 * 330.00085 * 11 9 7 15 15 C 1.50708 * 109.47141 * 239.99699 * 2 1 3 16 16 C 1.39376 * 119.50584 * 279.99990 * 15 2 1 17 17 C 1.36097 * 120.98680 * 180.02562 * 16 15 2 18 18 C 1.40537 * 119.65587 * 359.97438 * 17 16 15 19 19 C 1.40535 * 121.29149 * 180.02562 * 18 17 16 20 20 C 1.36097 * 119.65570 * 179.97438 * 19 18 17 21 21 C 1.39371 * 120.98907 * 359.97438 * 20 19 18 22 22 C 1.36095 * 120.98945 * 0.02562 * 21 20 19 23 23 C 1.40539 * 119.65209 * 359.95744 * 22 21 20 24 24 C 1.36090 * 119.50164 * 99.73306 * 15 2 1 25 25 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 26 26 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 27 27 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47426 * 299.99475 * 5 4 2 29 29 H 1.08994 * 109.47765 * 59.99757 * 5 4 2 30 30 H 1.08996 * 109.47308 * 300.00188 * 6 5 4 31 31 H 1.09002 * 109.47052 * 59.99874 * 6 5 4 32 32 H 0.97008 * 120.00795 * 179.97438 * 10 9 7 33 33 H 1.07996 * 119.50337 * 0.02562 * 16 15 2 34 34 H 1.07997 * 120.16901 * 179.97438 * 17 16 15 35 35 H 1.08002 * 120.17327 * 359.96032 * 19 18 17 36 36 H 1.07993 * 119.50767 * 180.02562 * 20 19 18 37 37 H 1.08004 * 119.50712 * 180.02562 * 21 20 19 38 38 H 1.07997 * 120.17479 * 179.97438 * 22 21 20 39 39 H 1.07996 * 120.17638 * 359.96968 * 24 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.2001 0.1829 2.2940 6 6 2.7079 -0.6408 3.4792 7 6 2.9128 0.2626 4.6678 8 1 2.7015 1.3186 4.5863 9 6 3.3690 -0.2591 5.8598 10 7 3.6258 -1.5450 5.9592 11 14 3.6223 0.8606 7.3333 12 1 2.3691 0.9248 8.1274 13 1 4.7180 0.3242 8.1801 14 1 3.9813 2.2230 6.8640 15 6 2.0323 -0.7105 -1.2305 16 6 2.0626 -2.1037 -1.2544 17 6 2.5108 -2.7762 -2.3495 18 6 2.9500 -2.0581 -3.4749 19 6 3.4190 -2.7173 -4.6240 20 6 3.8359 -1.9887 -5.6953 21 6 3.8046 -0.5956 -5.6717 22 6 3.3568 0.0768 -4.5764 23 6 2.9178 -0.6414 -3.4510 24 6 2.4445 0.0179 -2.3036 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 2.9320 0.9513 2.0450 29 1 1.2539 0.6547 2.5589 30 1 1.9758 -1.4089 3.7282 31 1 3.6541 -1.1129 3.2147 32 1 3.9472 -1.9121 6.7977 33 1 1.7253 -2.6579 -0.3911 34 1 2.5289 -3.8560 -2.3536 35 1 3.4488 -3.7964 -4.6567 36 1 4.1955 -2.4978 -6.5773 37 1 4.1408 -0.0412 -6.5355 38 1 3.3387 1.1566 -4.5722 39 1 2.4109 1.0969 -2.2726 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205622243.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:23 Heat of formation + Delta-G solvation = -22.365801 kcal Electronic energy + Delta-G solvation = -19254.875913 eV Core-core repulsion = 16319.481159 eV Total energy + Delta-G solvation = -2935.394754 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.136 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.43775 -38.12797 -36.20424 -33.42450 -32.85129 -31.76716 -29.71924 -29.50395 -28.58782 -24.84340 -23.72516 -23.29558 -21.97558 -21.06310 -20.82919 -17.39873 -17.13799 -16.37173 -16.26369 -15.39213 -14.84511 -14.82880 -14.60453 -14.30930 -13.85590 -13.54156 -13.39445 -13.05264 -12.78941 -12.50797 -12.33864 -12.09501 -11.88180 -11.37039 -11.21860 -11.04005 -10.93529 -10.88935 -10.56936 -10.36589 -10.31551 -9.98598 -9.49738 -9.20581 -8.92413 -8.51078 -8.36078 -7.90070 -6.03478 -4.07139 0.50984 0.99606 2.03505 2.96775 3.30541 3.36487 3.39617 4.06004 4.19998 4.45705 4.59369 4.75461 4.83739 4.92714 5.05603 5.13950 5.26895 5.32644 5.34632 5.41475 5.44743 5.53287 5.71942 5.77926 5.91534 5.92921 6.09846 6.20083 6.21628 6.25171 6.29742 6.36725 6.38847 6.60679 6.66973 6.79490 6.88363 7.00715 7.54481 7.78845 7.82197 8.10356 8.35550 8.99416 9.56575 11.08164 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.032919 B = 0.003154 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.360008 B = 8876.546728 C = 9006.336202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.120 3.880 3 H 0.064 0.936 4 O -0.380 6.380 5 C 0.069 3.931 6 C 0.026 3.974 7 C -0.524 4.524 8 H 0.056 0.944 9 C 0.059 3.941 10 N -0.891 5.891 11 Si 0.896 3.104 12 H -0.280 1.280 13 H -0.285 1.285 14 H -0.273 1.273 15 C -0.064 4.064 16 C -0.081 4.081 17 C -0.115 4.115 18 C -0.053 4.053 19 C -0.105 4.105 20 C -0.123 4.123 21 C -0.124 4.124 22 C -0.104 4.104 23 C -0.051 4.051 24 C -0.107 4.107 25 H 0.059 0.941 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.035 0.965 29 H 0.036 0.964 30 H 0.024 0.976 31 H 0.024 0.976 32 H 0.262 0.738 33 H 0.132 0.868 34 H 0.127 0.873 35 H 0.125 0.875 36 H 0.119 0.881 37 H 0.119 0.881 38 H 0.125 0.875 39 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.992 0.859 -22.475 22.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.061 3.939 3 H 0.082 0.918 4 O -0.300 6.300 5 C -0.006 4.006 6 C -0.011 4.011 7 C -0.562 4.562 8 H 0.074 0.926 9 C -0.143 4.143 10 N -0.530 5.530 11 Si 0.724 3.276 12 H -0.206 1.206 13 H -0.211 1.211 14 H -0.198 1.198 15 C -0.065 4.065 16 C -0.099 4.099 17 C -0.133 4.133 18 C -0.053 4.053 19 C -0.123 4.123 20 C -0.141 4.141 21 C -0.142 4.142 22 C -0.122 4.122 23 C -0.051 4.051 24 C -0.125 4.125 25 H 0.078 0.922 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.043 0.957 31 H 0.042 0.958 32 H 0.072 0.928 33 H 0.150 0.850 34 H 0.145 0.855 35 H 0.143 0.857 36 H 0.137 0.863 37 H 0.137 0.863 38 H 0.143 0.857 39 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -2.890 0.529 -22.333 22.526 hybrid contribution 0.157 0.833 0.884 1.225 sum -2.733 1.362 -21.449 21.665 Atomic orbital electron populations 1.22250 0.95403 1.02910 1.01917 1.20829 0.93446 0.94911 0.84696 0.91793 1.87975 1.86165 1.36142 1.19722 1.22934 0.98077 0.93611 0.86027 1.19061 0.97077 0.95549 0.89430 1.21051 1.44971 0.94528 0.95680 0.92575 1.24991 0.95352 0.95092 0.98843 1.69977 1.45083 1.11658 1.26239 0.86533 0.77871 0.80765 0.82465 1.20571 1.21113 1.19826 1.19637 0.97915 0.94236 0.94675 1.20818 0.97338 0.93843 0.97943 1.21034 0.99748 0.99705 0.92800 1.18127 0.99635 0.92678 0.94812 1.21030 0.98777 0.99714 0.92784 1.20801 1.00579 0.94165 0.98600 1.20796 1.00520 0.94470 0.98380 1.21013 0.98839 0.99622 0.92767 1.18020 0.99823 0.92686 0.94591 1.20817 0.99531 0.99562 0.92600 0.92167 0.91791 0.91738 0.94670 0.94604 0.95748 0.95760 0.92842 0.84982 0.85524 0.85734 0.86269 0.86254 0.85747 0.85627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.26 9.50 37.16 0.35 -1.90 16 2 C 0.12 1.87 2.90 -27.88 -0.08 1.78 16 3 H 0.06 0.94 7.60 -51.93 -0.39 0.54 16 4 O -0.38 -7.62 9.27 -35.23 -0.33 -7.95 16 5 C 0.07 1.51 5.69 37.16 0.21 1.72 16 6 C 0.03 0.70 5.34 -27.88 -0.15 0.55 16 7 C -0.52 -14.97 9.11 -34.44 -0.31 -15.29 16 8 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 9 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 10 N -0.89 -27.03 13.28 55.43 0.74 -26.29 16 11 Si 0.90 21.63 29.54 -169.99 -5.02 16.61 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 14 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 15 C -0.06 -0.95 4.94 -104.97 -0.52 -1.47 16 16 C -0.08 -1.19 9.25 -39.93 -0.37 -1.56 16 17 C -0.11 -1.48 9.77 -39.48 -0.39 -1.86 16 18 C -0.05 -0.67 5.74 -106.84 -0.61 -1.28 16 19 C -0.11 -1.11 9.77 -39.49 -0.39 -1.50 16 20 C -0.12 -1.17 9.95 -39.93 -0.40 -1.56 16 21 C -0.12 -1.17 9.95 -39.93 -0.40 -1.57 16 22 C -0.10 -1.11 9.77 -39.48 -0.39 -1.50 16 23 C -0.05 -0.66 5.74 -106.83 -0.61 -1.27 16 24 C -0.11 -1.40 9.36 -39.48 -0.37 -1.77 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.06 0.87 7.87 -51.93 -0.41 0.47 16 27 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 28 H 0.04 0.74 8.09 -51.93 -0.42 0.32 16 29 H 0.04 0.74 7.87 -51.93 -0.41 0.33 16 30 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.02 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 33 H 0.13 1.98 7.74 -52.49 -0.41 1.57 16 34 H 0.13 1.33 8.06 -52.49 -0.42 0.90 16 35 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 36 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 37 H 0.12 0.83 8.06 -52.48 -0.42 0.41 16 38 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 39 H 0.13 1.37 8.00 -52.49 -0.42 0.95 16 LS Contribution 331.72 15.07 5.00 5.00 Total: -1.00 -31.60 331.72 -9.93 -41.53 By element: Atomic # 1 Polarization: 3.78 SS G_CDS: -5.80 Total: -2.03 kcal Atomic # 6 Polarization: -22.36 SS G_CDS: -4.51 Total: -26.87 kcal Atomic # 7 Polarization: -27.03 SS G_CDS: 0.74 Total: -26.29 kcal Atomic # 8 Polarization: -7.62 SS G_CDS: -0.33 Total: -7.95 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.60 -9.93 -41.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205622243.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.162 kcal (2) G-P(sol) polarization free energy of solvation -31.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds