Wall clock time and date at job start Mon Mar 30 2020 02:18:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 O 1.42905 * 109.47264 * 119.99945 * 2 1 3 5 5 C 1.42890 * 113.99966 * 270.00126 * 4 2 1 6 6 C 1.53003 * 109.47357 * 179.97438 * 5 4 2 7 7 C 1.50694 * 109.47414 * 179.97438 * 6 5 4 8 8 H 1.08005 * 120.00069 * 0.02562 * 7 6 5 9 9 C 1.37879 * 120.00021 * 179.97438 * 7 6 5 10 10 N 1.31504 * 120.00039 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 119.99903 * 180.02562 * 9 7 6 12 12 H 1.48505 * 109.47094 * 90.00246 * 11 9 7 13 13 H 1.48503 * 109.47101 * 210.00102 * 11 9 7 14 14 H 1.48503 * 109.47643 * 330.00085 * 11 9 7 15 15 C 1.50708 * 109.47141 * 239.99699 * 2 1 3 16 16 C 1.39376 * 119.50584 * 279.99990 * 15 2 1 17 17 C 1.36097 * 120.98680 * 180.02562 * 16 15 2 18 18 C 1.40537 * 119.65587 * 359.97438 * 17 16 15 19 19 C 1.40535 * 121.29149 * 180.02562 * 18 17 16 20 20 C 1.36097 * 119.65570 * 179.97438 * 19 18 17 21 21 C 1.39371 * 120.98907 * 359.97438 * 20 19 18 22 22 C 1.36095 * 120.98945 * 0.02562 * 21 20 19 23 23 C 1.40539 * 119.65209 * 359.95744 * 22 21 20 24 24 C 1.36090 * 119.50164 * 99.73306 * 15 2 1 25 25 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 26 26 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 27 27 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47426 * 299.99475 * 5 4 2 29 29 H 1.08994 * 109.47765 * 59.99757 * 5 4 2 30 30 H 1.08996 * 109.47308 * 300.00188 * 6 5 4 31 31 H 1.09002 * 109.47052 * 59.99874 * 6 5 4 32 32 H 0.97008 * 120.00795 * 179.97438 * 10 9 7 33 33 H 1.07996 * 119.50337 * 0.02562 * 16 15 2 34 34 H 1.07997 * 120.16901 * 179.97438 * 17 16 15 35 35 H 1.08002 * 120.17327 * 359.96032 * 19 18 17 36 36 H 1.07993 * 119.50767 * 180.02562 * 20 19 18 37 37 H 1.08004 * 119.50712 * 180.02562 * 21 20 19 38 38 H 1.07997 * 120.17479 * 179.97438 * 22 21 20 39 39 H 1.07996 * 120.17638 * 359.96968 * 24 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.2001 0.1829 2.2940 6 6 2.7079 -0.6408 3.4792 7 6 2.9128 0.2626 4.6678 8 1 2.7015 1.3186 4.5863 9 6 3.3690 -0.2591 5.8598 10 7 3.6258 -1.5450 5.9592 11 14 3.6223 0.8606 7.3333 12 1 2.3691 0.9248 8.1274 13 1 4.7180 0.3242 8.1801 14 1 3.9813 2.2230 6.8640 15 6 2.0323 -0.7105 -1.2305 16 6 2.0626 -2.1037 -1.2544 17 6 2.5108 -2.7762 -2.3495 18 6 2.9500 -2.0581 -3.4749 19 6 3.4190 -2.7173 -4.6240 20 6 3.8359 -1.9887 -5.6953 21 6 3.8046 -0.5956 -5.6717 22 6 3.3568 0.0768 -4.5764 23 6 2.9178 -0.6414 -3.4510 24 6 2.4445 0.0179 -2.3036 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 2.9320 0.9513 2.0450 29 1 1.2539 0.6547 2.5589 30 1 1.9758 -1.4089 3.7282 31 1 3.6541 -1.1129 3.2147 32 1 3.9472 -1.9121 6.7977 33 1 1.7253 -2.6579 -0.3911 34 1 2.5289 -3.8560 -2.3536 35 1 3.4488 -3.7964 -4.6567 36 1 4.1955 -2.4978 -6.5773 37 1 4.1408 -0.0412 -6.5355 38 1 3.3387 1.1566 -4.5722 39 1 2.4109 1.0969 -2.2726 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205622243.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:22 Heat of formation + Delta-G solvation = -38.297960 kcal Electronic energy + Delta-G solvation = -19255.566783 eV Core-core repulsion = 16319.481159 eV Total energy + Delta-G solvation = -2936.085625 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.136 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.35949 -39.43565 -37.31567 -35.41514 -33.93160 -33.01747 -31.44764 -30.55267 -29.58122 -26.77852 -24.87465 -24.22711 -22.97708 -22.67971 -22.14888 -18.80415 -18.21117 -17.91539 -17.36167 -16.75092 -16.53184 -16.39928 -15.70122 -15.46190 -14.90904 -14.53884 -14.38846 -14.22797 -14.15309 -14.08968 -13.79658 -13.17095 -13.09820 -12.90171 -12.85580 -12.44590 -12.36975 -12.13697 -11.91748 -11.80413 -11.59600 -11.44464 -11.34570 -10.89254 -10.66518 -10.39740 -9.45653 -8.79065 -8.24236 -6.37607 -0.37473 0.07164 1.13584 1.40453 1.42999 1.54130 2.05597 2.37309 2.86233 3.09607 3.20081 3.68840 3.75846 3.99162 4.06628 4.08306 4.24640 4.30133 4.34129 4.44169 4.45477 4.48945 4.51695 4.60783 4.74583 4.85347 4.90912 4.94895 5.02627 5.18451 5.24877 5.31754 5.35853 5.37394 5.56357 5.57420 5.64560 5.68535 5.74553 5.92689 6.10862 6.12633 6.45744 6.78462 7.32285 8.88906 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.032919 B = 0.003154 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.360008 B = 8876.546728 C = 9006.336202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.115 3.885 3 H 0.076 0.924 4 O -0.402 6.402 5 C 0.086 3.914 6 C 0.029 3.971 7 C -0.546 4.546 8 H 0.068 0.932 9 C -0.001 4.001 10 N -0.933 5.933 11 Si 0.975 3.025 12 H -0.270 1.270 13 H -0.281 1.281 14 H -0.259 1.259 15 C -0.087 4.087 16 C -0.108 4.108 17 C -0.115 4.115 18 C -0.072 4.072 19 C -0.118 4.118 20 C -0.119 4.119 21 C -0.120 4.120 22 C -0.115 4.115 23 C -0.071 4.071 24 C -0.104 4.104 25 H 0.085 0.915 26 H 0.060 0.940 27 H 0.055 0.945 28 H 0.043 0.957 29 H 0.048 0.952 30 H -0.006 1.006 31 H -0.009 1.009 32 H 0.266 0.734 33 H 0.114 0.886 34 H 0.143 0.857 35 H 0.143 0.857 36 H 0.149 0.851 37 H 0.150 0.850 38 H 0.145 0.855 39 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.654 2.644 -24.384 24.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.057 3.943 3 H 0.094 0.906 4 O -0.322 6.322 5 C 0.011 3.989 6 C -0.008 4.008 7 C -0.583 4.583 8 H 0.086 0.914 9 C -0.199 4.199 10 N -0.572 5.572 11 Si 0.798 3.202 12 H -0.195 1.195 13 H -0.207 1.207 14 H -0.183 1.183 15 C -0.087 4.087 16 C -0.127 4.127 17 C -0.132 4.132 18 C -0.072 4.072 19 C -0.136 4.136 20 C -0.137 4.137 21 C -0.138 4.138 22 C -0.133 4.133 23 C -0.071 4.071 24 C -0.122 4.122 25 H 0.104 0.896 26 H 0.079 0.921 27 H 0.075 0.925 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.012 0.988 31 H 0.009 0.991 32 H 0.075 0.925 33 H 0.132 0.868 34 H 0.161 0.839 35 H 0.161 0.839 36 H 0.167 0.833 37 H 0.168 0.832 38 H 0.163 0.837 39 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -2.565 2.320 -24.266 24.511 hybrid contribution 0.095 0.206 1.261 1.281 sum -2.470 2.527 -23.005 23.275 Atomic orbital electron populations 1.22203 0.93914 1.02762 1.02990 1.21088 0.94700 0.95240 0.83259 0.90622 1.87934 1.86787 1.36880 1.20639 1.22504 0.98570 0.92631 0.85245 1.18916 0.94723 0.95334 0.91812 1.21476 1.45132 0.95270 0.96453 0.91360 1.26059 0.94678 0.96733 1.02410 1.70127 1.45845 1.13901 1.27360 0.85305 0.78091 0.78817 0.77959 1.19484 1.20685 1.18340 1.19599 0.99910 0.94304 0.94924 1.20778 0.99395 0.94241 0.98244 1.21243 0.98899 1.00640 0.92462 1.18421 1.00148 0.93141 0.95491 1.21305 0.98914 1.00937 0.92430 1.21237 0.98954 0.94465 0.99034 1.21236 0.98930 0.94797 0.98829 1.21300 0.98832 1.00812 0.92362 1.18325 1.00334 0.93070 0.95357 1.21041 0.98464 1.00510 0.92168 0.89573 0.92075 0.92546 0.93839 0.93331 0.98773 0.99102 0.92549 0.86832 0.83878 0.83911 0.83306 0.83240 0.83699 0.83623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.33 9.50 71.98 0.68 -3.65 16 2 C 0.11 3.61 2.90 29.85 0.09 3.70 16 3 H 0.08 2.17 7.60 -2.39 -0.02 2.15 16 4 O -0.40 -16.78 9.27 -148.98 -1.38 -18.16 16 5 C 0.09 3.86 5.69 71.98 0.41 4.27 16 6 C 0.03 1.66 5.34 29.85 0.16 1.82 16 7 C -0.55 -31.68 9.11 25.60 0.23 -31.45 16 8 H 0.07 3.71 7.74 -2.91 -0.02 3.69 16 9 C 0.00 -0.04 5.46 84.66 0.46 0.42 16 10 N -0.93 -58.12 13.28 21.45 0.28 -57.84 16 11 Si 0.97 44.36 29.54 68.60 2.03 46.38 16 12 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 13 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 14 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 15 C -0.09 -2.61 4.94 -20.09 -0.10 -2.71 16 16 C -0.11 -3.34 9.25 22.05 0.20 -3.14 16 17 C -0.11 -3.02 9.77 22.33 0.22 -2.80 16 18 C -0.07 -1.79 5.74 -21.30 -0.12 -1.91 16 19 C -0.12 -2.27 9.77 22.33 0.22 -2.05 16 20 C -0.12 -1.86 9.95 22.04 0.22 -1.64 16 21 C -0.12 -1.86 9.95 22.04 0.22 -1.64 16 22 C -0.12 -2.16 9.77 22.33 0.22 -1.94 16 23 C -0.07 -1.74 5.74 -21.30 -0.12 -1.86 16 24 C -0.10 -2.65 9.36 22.33 0.21 -2.44 16 25 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 26 H 0.06 1.65 7.87 -2.39 -0.02 1.63 16 27 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 28 H 0.04 1.85 8.09 -2.39 -0.02 1.83 16 29 H 0.05 2.02 7.87 -2.39 -0.02 2.01 16 30 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 31 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 32 H 0.27 15.42 8.31 -92.70 -0.77 14.65 16 33 H 0.11 3.77 7.74 -2.91 -0.02 3.74 16 34 H 0.14 3.06 8.06 -2.91 -0.02 3.04 16 35 H 0.14 2.09 8.06 -2.91 -0.02 2.07 16 36 H 0.15 1.42 8.06 -2.91 -0.02 1.39 16 37 H 0.15 1.39 8.06 -2.91 -0.02 1.37 16 38 H 0.15 2.01 8.06 -2.91 -0.02 1.99 16 39 H 0.15 2.94 8.00 -2.91 -0.02 2.92 16 Total: -1.00 -70.24 331.72 5.14 -65.10 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: 1.01 Total: 11.54 kcal Atomic # 6 Polarization: -50.22 SS G_CDS: 3.20 Total: -47.02 kcal Atomic # 7 Polarization: -58.12 SS G_CDS: 0.28 Total: -57.84 kcal Atomic # 8 Polarization: -16.78 SS G_CDS: -1.38 Total: -18.16 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.38 kcal Total: -70.24 5.14 -65.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205622243.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.799 kcal (2) G-P(sol) polarization free energy of solvation -70.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds