Wall clock time and date at job start Mon Mar 30 2020 00:52:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.47066 * 180.02562 * 9 7 2 11 11 C 1.47480 * 111.00058 * 265.97169 * 10 9 7 12 12 C 1.53511 * 87.92978 * 221.29855 * 11 10 9 13 13 O 1.42904 * 114.34213 * 139.68581 * 12 11 10 14 14 C 1.42901 * 113.99749 * 116.07334 * 13 12 11 15 15 C 1.52999 * 109.46930 * 179.97438 * 14 13 12 16 16 N 1.46501 * 109.47102 * 64.99934 * 15 14 13 17 17 C 1.47094 * 125.56186 * 90.00041 * 16 15 14 18 18 C 1.54090 * 103.77716 * 179.97438 * 17 16 15 19 19 O 1.45697 * 104.00872 * 0.02562 * 18 17 16 20 20 C 1.33771 * 109.47769 * 359.75553 * 19 18 17 21 21 O 1.21513 * 123.07365 * 180.24078 * 20 19 18 22 22 C 1.47483 * 110.99717 * 169.99804 * 10 9 7 23 23 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 24 24 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 25 25 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 26 26 H 1.09004 * 113.47132 * 336.06118 * 11 10 9 27 27 H 1.09000 * 113.47538 * 106.52857 * 11 10 9 28 28 H 1.09002 * 114.16514 * 272.37172 * 12 11 10 29 29 H 1.08997 * 109.47278 * 299.99818 * 14 13 12 30 30 H 1.08998 * 109.47119 * 59.99986 * 14 13 12 31 31 H 1.09000 * 109.47447 * 184.99800 * 15 14 13 32 32 H 1.08998 * 109.47105 * 305.00145 * 15 14 13 33 33 H 1.08992 * 110.56270 * 298.55488 * 17 16 15 34 34 H 1.09005 * 110.56263 * 61.40732 * 17 16 15 35 35 H 1.09004 * 110.51451 * 118.63326 * 18 17 16 36 36 H 1.08998 * 110.52456 * 241.22720 * 18 17 16 37 37 H 1.09000 * 113.47556 * 253.46531 * 22 10 9 38 38 H 1.08997 * 113.47949 * 23.93922 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2057 -3.6158 -0.0005 11 6 2.4756 -4.0803 -1.3740 12 6 2.4190 -5.5182 -0.8392 13 8 1.7500 -6.4412 -1.7009 14 6 2.5929 -7.4773 -2.2091 15 6 1.7756 -8.4018 -3.1137 16 7 1.3232 -7.6574 -4.2917 17 6 2.0570 -7.5361 -5.5608 18 6 1.1380 -6.6599 -6.4337 19 8 -0.0048 -6.3817 -5.5738 20 6 0.1712 -6.9800 -4.3904 21 8 -0.6380 -6.9128 -3.4865 22 6 1.5184 -4.8986 0.2386 23 1 -0.4850 0.8401 0.0004 24 1 0.6247 -2.5571 0.8897 25 1 0.6240 -2.5568 -0.8903 26 1 1.6756 -3.8466 -2.0765 27 1 3.4598 -3.7930 -1.7440 28 1 3.3715 -5.8925 -0.4639 29 1 3.4075 -7.0347 -2.7823 30 1 3.0032 -8.0519 -1.3787 31 1 2.3949 -9.2411 -3.4301 32 1 0.9106 -8.7749 -2.5655 33 1 3.0170 -7.0450 -5.4025 34 1 2.1976 -8.5161 -6.0168 35 1 1.6425 -5.7339 -6.7096 36 1 0.8253 -7.2037 -7.3250 37 1 1.6915 -5.3047 1.2352 38 1 0.4631 -4.8832 -0.0336 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225063992.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:44 Heat of formation + Delta-G solvation = -64.051578 kcal Electronic energy + Delta-G solvation = -21050.016329 eV Core-core repulsion = 17701.964680 eV Total energy + Delta-G solvation = -3348.051649 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.52742 -39.46271 -37.27058 -36.82813 -35.30702 -32.78703 -31.01906 -29.27894 -28.54857 -25.32830 -24.96312 -24.09857 -23.43041 -21.48850 -20.89488 -19.34401 -17.61378 -17.35896 -17.03189 -16.72194 -16.12854 -15.44463 -15.09198 -14.86341 -14.40390 -14.19673 -14.13453 -14.03283 -13.47026 -13.15260 -12.82175 -12.62504 -12.34778 -11.95946 -11.87511 -11.55914 -11.16792 -11.02278 -10.78878 -10.73598 -10.51561 -10.48956 -10.12640 -9.69402 -9.17365 -9.06971 -9.05992 -8.37390 -7.85583 -5.96716 -3.98493 2.32676 2.84010 3.37257 3.37639 3.40609 3.43920 3.74799 3.93062 4.37775 4.46933 4.50651 4.84126 4.88514 4.95160 5.00227 5.06893 5.09750 5.18236 5.25432 5.37790 5.39043 5.46062 5.70449 5.96973 6.17947 6.27625 6.29281 6.37701 6.48127 6.65812 7.29458 7.32136 7.50648 7.72010 7.91679 8.10636 8.17056 8.51508 9.08125 9.64850 11.14386 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.022610 B = 0.004192 C = 0.003876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.112745 B = 6677.161848 C = 7221.829904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.054 3.946 3 Si 0.900 3.100 4 H -0.287 1.287 5 H -0.276 1.276 6 H -0.278 1.278 7 C -0.506 4.506 8 H 0.062 0.938 9 C 0.161 3.839 10 N -0.464 5.464 11 C -0.003 4.003 12 C 0.051 3.949 13 O -0.360 6.360 14 C 0.038 3.962 15 C 0.151 3.849 16 N -0.630 5.630 17 C 0.066 3.934 18 C 0.041 3.959 19 O -0.330 6.330 20 C 0.644 3.356 21 O -0.500 6.500 22 C -0.002 4.002 23 H 0.262 0.738 24 H 0.029 0.971 25 H 0.006 0.994 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.091 0.909 29 H 0.049 0.951 30 H 0.061 0.939 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.105 0.895 36 H 0.103 0.897 37 H 0.077 0.923 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.576 -20.154 -12.852 25.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.147 4.147 3 Si 0.728 3.272 4 H -0.213 1.213 5 H -0.202 1.202 6 H -0.203 1.203 7 C -0.545 4.545 8 H 0.080 0.920 9 C 0.035 3.965 10 N -0.189 5.189 11 C -0.132 4.132 12 C -0.007 4.007 13 O -0.277 6.277 14 C -0.040 4.040 15 C 0.030 3.970 16 N -0.380 5.380 17 C -0.058 4.058 18 C -0.034 4.034 19 O -0.240 6.240 20 C 0.397 3.603 21 O -0.382 6.382 22 C -0.131 4.131 23 H 0.072 0.928 24 H 0.047 0.953 25 H 0.023 0.977 26 H 0.087 0.913 27 H 0.090 0.910 28 H 0.109 0.891 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.115 0.885 32 H 0.114 0.886 33 H 0.108 0.892 34 H 0.107 0.893 35 H 0.123 0.877 36 H 0.121 0.879 37 H 0.095 0.905 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 7.101 -19.578 -12.036 24.054 hybrid contribution 0.208 0.813 -0.566 1.013 sum 7.309 -18.765 -12.602 23.756 Atomic orbital electron populations 1.69962 1.06066 1.26888 1.50889 1.25018 0.94886 0.99351 0.95480 0.86525 0.79390 0.82670 0.78593 1.21315 1.20164 1.20319 1.21054 0.93474 0.89793 1.50137 0.91978 1.20254 0.90565 0.88773 0.96870 1.68944 1.33813 1.01686 1.14414 1.24198 1.01893 0.92849 0.94283 1.24005 0.96196 0.88580 0.91962 1.88140 1.35381 1.39452 1.64753 1.22978 0.93633 0.90643 0.96770 1.21371 1.00161 0.92145 0.83339 1.47909 1.20375 1.54861 1.14827 1.22762 0.97115 1.01352 0.84540 1.24221 0.84702 1.01123 0.93374 1.87321 1.42739 1.68933 1.25035 1.18437 0.82373 0.77430 0.82026 1.91091 1.46977 1.63448 1.36718 1.24025 0.98273 0.92834 0.97976 0.92841 0.95257 0.97663 0.91275 0.90951 0.89078 0.93256 0.92062 0.88532 0.88560 0.89247 0.89306 0.87710 0.87877 0.90461 0.91129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.02 13.29 55.43 0.74 -27.28 16 2 C 0.05 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 22.48 29.54 -169.99 -5.02 17.46 16 4 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 5 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.51 -15.14 9.39 -34.44 -0.32 -15.46 16 8 H 0.06 1.83 7.81 -52.49 -0.41 1.42 16 9 C 0.16 4.55 4.57 -4.98 -0.02 4.53 16 10 N -0.46 -10.91 6.32 -246.08 -1.55 -12.47 16 11 C 0.00 -0.06 7.56 -7.54 -0.06 -0.11 16 12 C 0.05 0.87 4.65 -26.20 -0.12 0.74 16 13 O -0.36 -5.89 10.02 -35.23 -0.35 -6.24 16 14 C 0.04 0.41 6.12 37.16 0.23 0.63 16 15 C 0.15 1.35 6.41 -4.04 -0.03 1.33 16 16 N -0.63 -6.76 2.92 -178.85 -0.52 -7.28 16 17 C 0.07 0.39 7.70 -3.15 -0.02 0.37 16 18 C 0.04 0.28 8.23 37.73 0.31 0.59 16 19 O -0.33 -4.54 11.09 -37.83 -0.42 -4.95 16 20 C 0.64 10.02 8.62 53.71 0.46 10.48 16 21 O -0.50 -10.24 17.44 -19.12 -0.33 -10.57 16 22 C 0.00 -0.04 7.52 -7.53 -0.06 -0.09 16 23 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 24 H 0.03 0.88 8.08 -51.92 -0.42 0.46 16 25 H 0.01 0.17 7.30 -51.93 -0.38 -0.21 16 26 H 0.07 1.58 7.42 -51.93 -0.39 1.19 16 27 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 28 H 0.09 1.33 7.88 -51.93 -0.41 0.92 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.10 1.01 7.92 -51.93 -0.41 0.60 16 33 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 38 H 0.07 1.54 7.91 -51.93 -0.41 1.13 16 LS Contribution 324.07 15.07 4.88 4.88 Total: -1.00 -38.28 324.07 -8.08 -46.35 By element: Atomic # 1 Polarization: 1.35 SS G_CDS: -5.76 Total: -4.42 kcal Atomic # 6 Polarization: 4.25 SS G_CDS: 0.27 Total: 4.52 kcal Atomic # 7 Polarization: -45.69 SS G_CDS: -1.34 Total: -47.03 kcal Atomic # 8 Polarization: -20.66 SS G_CDS: -1.11 Total: -21.77 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -38.28 -8.08 -46.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225063992.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.699 kcal (2) G-P(sol) polarization free energy of solvation -38.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds