Wall clock time and date at job start Mon Mar 30 2020 00:52:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.47066 * 180.02562 * 9 7 2 11 11 C 1.47480 * 111.00058 * 265.97169 * 10 9 7 12 12 C 1.53511 * 87.92978 * 221.29855 * 11 10 9 13 13 O 1.42904 * 114.34213 * 139.68581 * 12 11 10 14 14 C 1.42901 * 113.99749 * 116.07334 * 13 12 11 15 15 C 1.52999 * 109.46930 * 179.97438 * 14 13 12 16 16 N 1.46501 * 109.47102 * 64.99934 * 15 14 13 17 17 C 1.47094 * 125.56186 * 90.00041 * 16 15 14 18 18 C 1.54090 * 103.77716 * 179.97438 * 17 16 15 19 19 O 1.45697 * 104.00872 * 0.02562 * 18 17 16 20 20 C 1.33771 * 109.47769 * 359.75553 * 19 18 17 21 21 O 1.21513 * 123.07365 * 180.24078 * 20 19 18 22 22 C 1.47483 * 110.99717 * 169.99804 * 10 9 7 23 23 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 24 24 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 25 25 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 26 26 H 1.09004 * 113.47132 * 336.06118 * 11 10 9 27 27 H 1.09000 * 113.47538 * 106.52857 * 11 10 9 28 28 H 1.09002 * 114.16514 * 272.37172 * 12 11 10 29 29 H 1.08997 * 109.47278 * 299.99818 * 14 13 12 30 30 H 1.08998 * 109.47119 * 59.99986 * 14 13 12 31 31 H 1.09000 * 109.47447 * 184.99800 * 15 14 13 32 32 H 1.08998 * 109.47105 * 305.00145 * 15 14 13 33 33 H 1.08992 * 110.56270 * 298.55488 * 17 16 15 34 34 H 1.09005 * 110.56263 * 61.40732 * 17 16 15 35 35 H 1.09004 * 110.51451 * 118.63326 * 18 17 16 36 36 H 1.08998 * 110.52456 * 241.22720 * 18 17 16 37 37 H 1.09000 * 113.47556 * 253.46531 * 22 10 9 38 38 H 1.08997 * 113.47949 * 23.93922 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2057 -3.6158 -0.0005 11 6 2.4756 -4.0803 -1.3740 12 6 2.4190 -5.5182 -0.8392 13 8 1.7500 -6.4412 -1.7009 14 6 2.5929 -7.4773 -2.2091 15 6 1.7756 -8.4018 -3.1137 16 7 1.3232 -7.6574 -4.2917 17 6 2.0570 -7.5361 -5.5608 18 6 1.1380 -6.6599 -6.4337 19 8 -0.0048 -6.3817 -5.5738 20 6 0.1712 -6.9800 -4.3904 21 8 -0.6380 -6.9128 -3.4865 22 6 1.5184 -4.8986 0.2386 23 1 -0.4850 0.8401 0.0004 24 1 0.6247 -2.5571 0.8897 25 1 0.6240 -2.5568 -0.8903 26 1 1.6756 -3.8466 -2.0765 27 1 3.4598 -3.7930 -1.7440 28 1 3.3715 -5.8925 -0.4639 29 1 3.4075 -7.0347 -2.7823 30 1 3.0032 -8.0519 -1.3787 31 1 2.3949 -9.2411 -3.4301 32 1 0.9106 -8.7749 -2.5655 33 1 3.0170 -7.0450 -5.4025 34 1 2.1976 -8.5161 -6.0168 35 1 1.6425 -5.7339 -6.7096 36 1 0.8253 -7.2037 -7.3250 37 1 1.6915 -5.3047 1.2352 38 1 0.4631 -4.8832 -0.0336 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225063992.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:44 Heat of formation + Delta-G solvation = -96.042121 kcal Electronic energy + Delta-G solvation = -21051.403543 eV Core-core repulsion = 17701.964680 eV Total energy + Delta-G solvation = -3349.438863 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.42972 -41.06350 -38.40527 -38.05906 -36.31251 -35.02490 -31.92595 -30.91477 -29.61324 -27.15290 -26.79315 -24.85391 -24.27714 -23.44728 -21.81736 -20.96652 -18.72392 -18.47265 -18.22783 -17.91935 -17.70755 -16.95704 -16.43176 -16.27856 -15.87398 -15.38098 -15.29000 -14.98683 -14.74257 -14.40117 -14.21767 -13.92319 -13.72834 -13.28806 -13.13929 -13.02679 -12.86188 -12.52537 -12.44582 -12.13417 -12.03360 -11.72593 -11.63376 -11.58506 -11.25333 -10.66383 -10.38112 -9.89570 -9.79742 -8.26298 -6.39365 1.37206 1.42636 1.51010 1.51825 1.75330 2.36338 2.62803 2.72027 3.05110 3.37198 3.41514 3.44211 3.80836 3.88735 3.99756 4.18188 4.30044 4.32843 4.46190 4.47337 4.55320 4.58589 4.60157 4.65746 4.78195 4.79788 4.84014 4.88502 4.97611 5.05635 5.48894 5.50151 5.68138 5.99467 6.32048 6.35340 6.43247 6.74566 7.05096 7.30641 8.85609 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.022610 B = 0.004192 C = 0.003876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.112745 B = 6677.161848 C = 7221.829904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.003 4.003 3 Si 0.981 3.019 4 H -0.280 1.280 5 H -0.263 1.263 6 H -0.265 1.265 7 C -0.530 4.530 8 H 0.065 0.935 9 C 0.178 3.822 10 N -0.473 5.473 11 C -0.008 4.008 12 C 0.089 3.911 13 O -0.390 6.390 14 C 0.026 3.974 15 C 0.146 3.854 16 N -0.623 5.623 17 C 0.067 3.933 18 C 0.029 3.971 19 O -0.363 6.363 20 C 0.632 3.368 21 O -0.572 6.572 22 C -0.011 4.011 23 H 0.266 0.734 24 H -0.002 1.002 25 H -0.033 1.033 26 H 0.034 0.966 27 H 0.091 0.909 28 H 0.134 0.866 29 H 0.068 0.932 30 H 0.092 0.908 31 H 0.154 0.846 32 H 0.073 0.927 33 H 0.110 0.890 34 H 0.131 0.869 35 H 0.116 0.884 36 H 0.135 0.865 37 H 0.101 0.899 38 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.271 -21.472 -14.054 28.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.201 4.201 3 Si 0.804 3.196 4 H -0.206 1.206 5 H -0.188 1.188 6 H -0.190 1.190 7 C -0.568 4.568 8 H 0.083 0.917 9 C 0.050 3.950 10 N -0.196 5.196 11 C -0.138 4.138 12 C 0.031 3.969 13 O -0.308 6.308 14 C -0.051 4.051 15 C 0.026 3.974 16 N -0.371 5.371 17 C -0.055 4.055 18 C -0.045 4.045 19 O -0.274 6.274 20 C 0.386 3.614 21 O -0.460 6.460 22 C -0.141 4.141 23 H 0.075 0.925 24 H 0.016 0.984 25 H -0.015 1.015 26 H 0.052 0.948 27 H 0.109 0.891 28 H 0.151 0.849 29 H 0.086 0.914 30 H 0.110 0.890 31 H 0.172 0.828 32 H 0.091 0.909 33 H 0.128 0.872 34 H 0.149 0.851 35 H 0.134 0.866 36 H 0.153 0.847 37 H 0.119 0.881 38 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 10.859 -20.941 -13.285 27.073 hybrid contribution -0.925 1.109 -0.313 1.478 sum 9.934 -19.832 -13.598 26.018 Atomic orbital electron populations 1.70119 1.08106 1.28273 1.51314 1.26104 0.95843 1.03821 0.94345 0.85271 0.78030 0.76926 0.79378 1.20560 1.18806 1.18951 1.21382 0.93723 0.90821 1.50861 0.91656 1.19890 0.90612 0.90889 0.93562 1.68834 1.32520 1.01664 1.16619 1.24209 1.01338 0.96062 0.92196 1.23668 0.96404 0.87132 0.89746 1.88146 1.37417 1.40613 1.64661 1.23425 0.93652 0.89748 0.98270 1.21684 0.99980 0.92998 0.82691 1.48107 1.19062 1.53135 1.16808 1.23164 0.96691 1.03582 0.82059 1.24777 0.83305 1.02715 0.93656 1.87247 1.45836 1.68998 1.25291 1.18828 0.83143 0.77657 0.81794 1.91016 1.49606 1.66150 1.39233 1.24092 0.97179 0.91999 1.00790 0.92493 0.98351 1.01525 0.94793 0.89114 0.84896 0.91374 0.89006 0.82816 0.90893 0.87223 0.85135 0.86572 0.84665 0.88065 0.94240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.46 13.29 21.45 0.28 -60.17 16 2 C 0.00 -0.20 5.46 84.66 0.46 0.26 16 3 Si 0.98 46.31 29.54 68.60 2.03 48.33 16 4 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 5 H -0.26 -11.85 7.11 99.48 0.71 -11.15 16 6 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 7 C -0.53 -32.59 9.39 25.60 0.24 -32.35 16 8 H 0.07 3.89 7.81 -2.91 -0.02 3.86 16 9 C 0.18 10.62 4.57 85.55 0.39 11.01 16 10 N -0.47 -22.84 6.32 -932.85 -5.89 -28.73 16 11 C -0.01 -0.36 7.56 83.58 0.63 0.28 16 12 C 0.09 2.93 4.65 30.94 0.14 3.07 16 13 O -0.39 -12.51 10.02 -148.98 -1.49 -14.00 16 14 C 0.03 0.47 6.12 71.98 0.44 0.91 16 15 C 0.15 2.21 6.41 86.38 0.55 2.77 16 16 N -0.62 -12.21 2.92 -951.45 -2.78 -14.99 16 17 C 0.07 0.54 7.70 86.63 0.67 1.21 16 18 C 0.03 0.34 8.23 72.35 0.60 0.93 16 19 O -0.36 -10.27 11.09 -47.31 -0.52 -10.79 16 20 C 0.63 20.36 8.62 129.91 1.12 21.48 16 21 O -0.57 -25.31 17.44 19.65 0.34 -24.97 16 22 C -0.01 -0.47 7.52 83.58 0.63 0.16 16 23 H 0.27 16.02 8.31 -92.71 -0.77 15.25 16 24 H 0.00 -0.10 8.08 -2.38 -0.02 -0.12 16 25 H -0.03 -2.18 7.30 -2.39 -0.02 -2.19 16 26 H 0.03 1.65 7.42 -2.39 -0.02 1.63 16 27 H 0.09 3.40 8.14 -2.39 -0.02 3.38 16 28 H 0.13 3.31 7.88 -2.39 -0.02 3.29 16 29 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.15 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.07 1.48 7.92 -2.39 -0.02 1.46 16 33 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.13 0.06 8.14 -2.38 -0.02 0.04 16 35 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.14 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.10 3.62 8.14 -2.39 -0.02 3.60 16 38 H 0.04 1.86 7.91 -2.39 -0.02 1.84 16 Total: -1.00 -92.07 324.07 -1.12 -93.19 By element: Atomic # 1 Polarization: 1.36 SS G_CDS: 1.04 Total: 2.40 kcal Atomic # 6 Polarization: 3.86 SS G_CDS: 5.87 Total: 9.73 kcal Atomic # 7 Polarization: -95.50 SS G_CDS: -8.39 Total: -103.89 kcal Atomic # 8 Polarization: -48.09 SS G_CDS: -1.68 Total: -49.77 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 2.03 Total: 48.33 kcal Total: -92.07 -1.12 -93.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225063992.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.853 kcal (2) G-P(sol) polarization free energy of solvation -92.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds