Wall clock time and date at job start Mon Mar 30 2020 00:53:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53002 * 109.66965 * 2 1 4 4 C 1.53193 * 109.57519 * 239.69722 * 2 1 3 5 5 C 1.50705 * 109.05843 * 183.35707 * 4 2 1 6 6 O 1.21442 * 119.75167 * 208.74257 * 5 4 2 7 7 C 1.40718 * 120.49949 * 28.76400 * 5 4 2 8 8 C 1.34839 * 121.59604 * 0.24130 * 7 5 4 9 9 C 1.47081 * 119.40707 * 180.27546 * 8 7 5 10 10 C 1.40268 * 120.05469 * 114.98003 * 9 8 7 11 11 C 1.38232 * 120.32006 * 179.97438 * 10 9 8 12 12 C 1.37817 * 120.44861 * 359.97438 * 11 10 9 13 13 C 1.40796 * 120.11299 * 0.02562 * 12 11 10 14 14 C 1.41451 * 120.16354 * 179.97438 * 13 12 11 15 15 H 1.07998 * 119.99900 * 24.37056 * 14 13 12 16 16 C 1.39928 * 120.00040 * 204.38005 * 14 13 12 17 17 N 1.30836 * 119.99790 * 17.74917 * 16 14 13 18 18 Si 1.86798 * 119.99823 * 197.74648 * 16 14 13 19 19 H 1.48500 * 109.47244 * 60.00079 * 18 16 14 20 20 H 1.48511 * 109.46879 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47200 * 299.99541 * 18 16 14 22 22 C 1.39358 * 120.06290 * 294.70786 * 9 8 7 23 23 C 1.50527 * 121.18757 * 0.26308 * 8 7 5 24 24 H 1.08998 * 109.47919 * 299.69640 * 1 2 3 25 25 H 1.09001 * 109.47235 * 59.70342 * 1 2 3 26 26 H 1.09004 * 109.47432 * 179.69742 * 1 2 3 27 27 H 1.08997 * 109.47403 * 180.29877 * 3 2 1 28 28 H 1.08996 * 109.46890 * 300.30415 * 3 2 1 29 29 H 1.09006 * 109.46752 * 60.29881 * 3 2 1 30 30 H 1.08999 * 109.54044 * 63.47672 * 4 2 1 31 31 H 1.09005 * 109.60556 * 303.26855 * 4 2 1 32 32 H 1.07996 * 119.20003 * 180.22655 * 7 5 4 33 33 H 1.07998 * 119.83933 * 359.97438 * 10 9 8 34 34 H 1.07994 * 119.77573 * 180.02562 * 11 10 9 35 35 H 1.08000 * 119.94463 * 180.02562 * 12 11 10 36 36 H 0.96999 * 119.99375 * 179.97438 * 17 16 14 37 37 H 1.07994 * 120.21959 * 0.02562 * 22 9 8 38 38 H 1.08997 * 109.46951 * 90.19376 * 23 8 7 39 39 H 1.09005 * 109.46687 * 210.17702 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0449 1.4407 0.0000 4 6 2.0432 -0.7283 -1.2462 5 6 3.5479 -0.7939 -1.1931 6 8 4.1864 -0.8292 -2.2255 7 6 4.2186 -0.8150 0.0438 8 6 3.5467 -0.7825 1.2124 9 6 4.2968 -0.8005 2.4775 10 6 4.2540 0.3084 3.3354 11 6 4.9564 0.2972 4.5259 12 6 5.7060 -0.8024 4.8842 13 6 5.7622 -1.9256 4.0370 14 6 6.5316 -3.0545 4.4034 15 1 6.7488 -3.2453 5.4440 16 6 7.0116 -3.9239 3.4177 17 7 7.0603 -3.5347 2.1695 18 14 7.5828 -5.6402 3.8839 19 1 6.4573 -6.3856 4.5025 20 1 8.0421 -6.3567 2.6668 21 1 8.7039 -5.5427 4.8528 22 6 5.0468 -1.9214 2.8285 23 6 2.0428 -0.7280 1.2457 24 1 -0.3635 0.5091 0.8926 25 1 -0.3634 0.5184 -0.8873 26 1 -0.3634 -1.0277 -0.0054 27 1 3.1349 1.4370 -0.0054 28 1 1.6789 1.9574 -0.8872 29 1 1.6877 1.9542 0.8927 30 1 1.7331 -0.1856 -2.1392 31 1 1.6350 -1.7387 -1.2735 32 1 5.2976 -0.8584 0.0574 33 1 3.6694 1.1751 3.0645 34 1 4.9169 1.1555 5.1800 35 1 6.2513 -0.8026 5.8164 36 1 7.3933 -4.1373 1.4863 37 1 5.0804 -2.7797 2.1739 38 1 1.6428 -1.7417 1.2644 39 1 1.7183 -0.1931 2.1383 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242315348.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:47 Heat of formation + Delta-G solvation = -28.311808 kcal Electronic energy + Delta-G solvation = -20343.449088 eV Core-core repulsion = 17407.796495 eV Total energy + Delta-G solvation = -2935.652593 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.136 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.19124 -37.78232 -36.98355 -34.03059 -33.06654 -29.92132 -29.41765 -28.15334 -27.34792 -26.74232 -25.30672 -22.66684 -21.05360 -20.19992 -19.44704 -17.34894 -16.82965 -15.83603 -15.44858 -15.15345 -14.77093 -14.72758 -14.19917 -13.99484 -13.64379 -13.28246 -12.92762 -12.73087 -12.31622 -12.25856 -12.10044 -11.79819 -11.66012 -11.55275 -11.26180 -11.14554 -10.93401 -10.78190 -10.67499 -10.60396 -10.52380 -9.78438 -9.74270 -9.24044 -9.09994 -8.64841 -7.52733 -7.43569 -6.82608 -4.44860 1.27245 2.64582 2.84307 3.04148 3.05656 3.15798 3.44105 3.88281 4.48677 4.53350 4.58323 4.79141 4.95603 5.24931 5.41076 5.46213 5.53505 5.58853 5.62431 5.71446 5.76246 5.81636 5.86019 6.05738 6.13790 6.15088 6.17467 6.32738 6.36614 6.49070 6.65896 6.78010 6.95894 6.99114 7.11941 7.24065 7.42553 7.72394 7.87347 7.92784 8.01074 8.15784 8.49281 8.79482 8.83257 10.11553 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.020044 B = 0.005636 C = 0.004858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.619426 B = 4966.805942 C = 5762.824208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.058 4.058 3 C -0.149 4.149 4 C -0.160 4.160 5 C 0.396 3.604 6 O -0.485 6.485 7 C -0.266 4.266 8 C 0.063 3.937 9 C -0.076 4.076 10 C -0.221 4.221 11 C -0.095 4.095 12 C -0.219 4.219 13 C 0.107 3.893 14 C -0.463 4.463 15 H 0.079 0.921 16 C 0.076 3.924 17 N -0.790 5.790 18 Si 0.908 3.092 19 H -0.263 1.263 20 H -0.278 1.278 21 H -0.265 1.265 22 C -0.134 4.134 23 C -0.091 4.091 24 H 0.060 0.940 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.062 0.938 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.088 0.912 31 H 0.096 0.904 32 H 0.133 0.867 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.283 0.717 37 H 0.123 0.877 38 H 0.089 0.911 39 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.581 3.765 -2.599 11.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.059 4.059 3 C -0.206 4.206 4 C -0.197 4.197 5 C 0.279 3.721 6 O -0.365 6.365 7 C -0.285 4.285 8 C 0.062 3.938 9 C -0.076 4.076 10 C -0.240 4.240 11 C -0.113 4.113 12 C -0.239 4.239 13 C 0.104 3.896 14 C -0.493 4.493 15 H 0.097 0.903 16 C -0.143 4.143 17 N -0.415 5.415 18 Si 0.732 3.268 19 H -0.188 1.188 20 H -0.203 1.203 21 H -0.190 1.190 22 C -0.153 4.153 23 C -0.128 4.128 24 H 0.079 0.921 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.081 0.919 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.107 0.893 31 H 0.114 0.886 32 H 0.151 0.849 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.111 0.889 36 H 0.094 0.906 37 H 0.141 0.859 38 H 0.107 0.893 39 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -10.168 3.668 -3.373 11.324 hybrid contribution 0.450 -0.789 0.278 0.950 sum -9.719 2.879 -3.095 10.598 Atomic orbital electron populations 1.21839 0.93727 1.02029 1.02041 1.20601 0.95785 0.95808 0.93659 1.21983 1.02138 0.94702 1.01810 1.22234 0.95491 1.02624 0.99367 1.20889 0.90803 0.71354 0.89059 1.90541 1.69905 1.38782 1.37291 1.22095 1.02006 1.11904 0.92510 1.21423 0.94162 0.84752 0.93474 1.18667 0.99614 0.96421 0.92884 1.20308 1.08607 0.98242 0.96836 1.20431 0.97854 0.97117 0.95897 1.21089 1.06139 0.94605 1.02037 1.17528 0.89639 0.91425 0.90964 1.19551 1.28799 1.06395 0.94508 0.90322 1.25917 0.93824 1.00057 0.94454 1.69789 1.33629 1.36224 1.01859 0.86365 0.79829 0.81587 0.78986 1.18783 1.20262 1.18954 1.21551 0.97256 0.97134 0.99393 1.20970 0.91843 1.01607 0.98365 0.92136 0.92441 0.92382 0.91874 0.92631 0.92090 0.89312 0.88554 0.84899 0.89180 0.89111 0.88888 0.90565 0.85930 0.89285 0.89415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 8.50 37.15 0.32 -0.96 16 2 C -0.06 -0.69 0.78 -154.35 -0.12 -0.81 16 3 C -0.15 -1.81 8.09 37.16 0.30 -1.51 16 4 C -0.16 -2.08 4.88 -27.78 -0.14 -2.22 16 5 C 0.40 6.95 6.08 -33.37 -0.20 6.75 16 6 O -0.48 -10.05 17.82 5.42 0.10 -9.95 16 7 C -0.27 -5.08 8.39 -39.85 -0.33 -5.42 16 8 C 0.06 1.14 4.56 -102.33 -0.47 0.67 16 9 C -0.08 -1.63 5.25 -105.13 -0.55 -2.18 16 10 C -0.22 -4.58 9.65 -38.82 -0.37 -4.96 16 11 C -0.09 -2.02 10.00 -39.74 -0.40 -2.42 16 12 C -0.22 -5.17 9.78 -38.77 -0.38 -5.55 16 13 C 0.11 2.74 5.57 -106.88 -0.60 2.15 16 14 C -0.46 -11.92 9.05 -37.73 -0.34 -12.26 16 15 H 0.08 1.94 7.91 -52.49 -0.41 1.53 16 16 C 0.08 1.86 5.14 -17.34 -0.09 1.77 16 17 N -0.79 -20.15 10.96 55.55 0.61 -19.54 16 18 Si 0.91 18.36 29.59 -169.99 -5.03 13.33 16 19 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 20 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 21 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 22 C -0.13 -3.31 8.36 -38.34 -0.32 -3.63 16 23 C -0.09 -1.27 4.67 -27.90 -0.13 -1.40 16 24 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.91 6.12 -51.93 -0.32 0.59 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.13 2.90 8.04 -52.49 -0.42 2.47 16 33 H 0.09 1.65 8.06 -52.49 -0.42 1.23 16 34 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 35 H 0.09 2.07 8.06 -52.49 -0.42 1.64 16 36 H 0.28 6.68 8.30 -40.82 -0.34 6.34 16 37 H 0.12 3.18 6.16 -52.49 -0.32 2.86 16 38 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.09 1.18 7.97 -51.93 -0.41 0.77 16 LS Contribution 322.24 15.07 4.86 4.86 Total: -1.00 -27.77 322.24 -8.97 -36.74 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -5.68 Total: 6.54 kcal Atomic # 6 Polarization: -28.15 SS G_CDS: -3.82 Total: -31.97 kcal Atomic # 7 Polarization: -20.15 SS G_CDS: 0.61 Total: -19.54 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: 0.10 Total: -9.95 kcal Atomic # 14 Polarization: 18.36 SS G_CDS: -5.03 Total: 13.33 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -27.77 -8.97 -36.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242315348.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.429 kcal (2) G-P(sol) polarization free energy of solvation -27.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds