Wall clock time and date at job start Mon Mar 30 2020 00:53:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53002 * 109.66965 * 2 1 4 4 C 1.53193 * 109.57519 * 239.69722 * 2 1 3 5 5 C 1.50705 * 109.05843 * 183.35707 * 4 2 1 6 6 O 1.21442 * 119.75167 * 208.74257 * 5 4 2 7 7 C 1.40718 * 120.49949 * 28.76400 * 5 4 2 8 8 C 1.34839 * 121.59604 * 0.24130 * 7 5 4 9 9 C 1.47081 * 119.40707 * 180.27546 * 8 7 5 10 10 C 1.40268 * 120.05469 * 114.98003 * 9 8 7 11 11 C 1.38232 * 120.32006 * 179.97438 * 10 9 8 12 12 C 1.37817 * 120.44861 * 359.97438 * 11 10 9 13 13 C 1.40796 * 120.11299 * 0.02562 * 12 11 10 14 14 C 1.41451 * 120.16354 * 179.97438 * 13 12 11 15 15 H 1.07998 * 119.99900 * 24.37056 * 14 13 12 16 16 C 1.39928 * 120.00040 * 204.38005 * 14 13 12 17 17 N 1.30836 * 119.99790 * 17.74917 * 16 14 13 18 18 Si 1.86798 * 119.99823 * 197.74648 * 16 14 13 19 19 H 1.48500 * 109.47244 * 60.00079 * 18 16 14 20 20 H 1.48511 * 109.46879 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47200 * 299.99541 * 18 16 14 22 22 C 1.39358 * 120.06290 * 294.70786 * 9 8 7 23 23 C 1.50527 * 121.18757 * 0.26308 * 8 7 5 24 24 H 1.08998 * 109.47919 * 299.69640 * 1 2 3 25 25 H 1.09001 * 109.47235 * 59.70342 * 1 2 3 26 26 H 1.09004 * 109.47432 * 179.69742 * 1 2 3 27 27 H 1.08997 * 109.47403 * 180.29877 * 3 2 1 28 28 H 1.08996 * 109.46890 * 300.30415 * 3 2 1 29 29 H 1.09006 * 109.46752 * 60.29881 * 3 2 1 30 30 H 1.08999 * 109.54044 * 63.47672 * 4 2 1 31 31 H 1.09005 * 109.60556 * 303.26855 * 4 2 1 32 32 H 1.07996 * 119.20003 * 180.22655 * 7 5 4 33 33 H 1.07998 * 119.83933 * 359.97438 * 10 9 8 34 34 H 1.07994 * 119.77573 * 180.02562 * 11 10 9 35 35 H 1.08000 * 119.94463 * 180.02562 * 12 11 10 36 36 H 0.96999 * 119.99375 * 179.97438 * 17 16 14 37 37 H 1.07994 * 120.21959 * 0.02562 * 22 9 8 38 38 H 1.08997 * 109.46951 * 90.19376 * 23 8 7 39 39 H 1.09005 * 109.46687 * 210.17702 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0449 1.4407 0.0000 4 6 2.0432 -0.7283 -1.2462 5 6 3.5479 -0.7939 -1.1931 6 8 4.1864 -0.8292 -2.2255 7 6 4.2186 -0.8150 0.0438 8 6 3.5467 -0.7825 1.2124 9 6 4.2968 -0.8005 2.4775 10 6 4.2540 0.3084 3.3354 11 6 4.9564 0.2972 4.5259 12 6 5.7060 -0.8024 4.8842 13 6 5.7622 -1.9256 4.0370 14 6 6.5316 -3.0545 4.4034 15 1 6.7488 -3.2453 5.4440 16 6 7.0116 -3.9239 3.4177 17 7 7.0603 -3.5347 2.1695 18 14 7.5828 -5.6402 3.8839 19 1 6.4573 -6.3856 4.5025 20 1 8.0421 -6.3567 2.6668 21 1 8.7039 -5.5427 4.8528 22 6 5.0468 -1.9214 2.8285 23 6 2.0428 -0.7280 1.2457 24 1 -0.3635 0.5091 0.8926 25 1 -0.3634 0.5184 -0.8873 26 1 -0.3634 -1.0277 -0.0054 27 1 3.1349 1.4370 -0.0054 28 1 1.6789 1.9574 -0.8872 29 1 1.6877 1.9542 0.8927 30 1 1.7331 -0.1856 -2.1392 31 1 1.6350 -1.7387 -1.2735 32 1 5.2976 -0.8584 0.0574 33 1 3.6694 1.1751 3.0645 34 1 4.9169 1.1555 5.1800 35 1 6.2513 -0.8026 5.8164 36 1 7.3933 -4.1373 1.4863 37 1 5.0804 -2.7797 2.1739 38 1 1.6428 -1.7417 1.2644 39 1 1.7183 -0.1931 2.1383 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242315348.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:47 Heat of formation + Delta-G solvation = -40.996788 kcal Electronic energy + Delta-G solvation = -20343.999150 eV Core-core repulsion = 17407.796495 eV Total energy + Delta-G solvation = -2936.202655 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.136 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.50055 -39.48096 -38.34598 -35.74968 -34.58502 -31.65446 -31.00740 -29.54393 -28.29972 -27.73955 -27.14723 -24.20634 -22.84145 -21.62758 -20.80688 -19.10499 -18.10696 -17.47387 -16.82789 -16.63330 -16.50320 -16.05839 -15.52994 -15.31205 -15.17344 -14.69572 -14.39584 -14.11453 -13.92518 -13.53663 -13.16288 -13.08983 -12.97275 -12.84386 -12.68836 -12.64983 -12.46547 -12.23354 -12.01801 -11.76254 -11.69545 -11.52625 -11.35924 -11.06225 -10.52499 -10.17493 -9.38113 -9.21321 -8.66493 -6.39234 -0.20704 0.89015 1.05431 1.35497 1.46732 1.50971 1.99677 2.17632 2.67722 3.31075 3.51174 3.59575 3.82393 3.83203 3.98936 4.28691 4.35454 4.47248 4.55398 4.65338 4.66098 4.73463 4.82737 4.90311 4.92629 4.99776 5.09479 5.12580 5.14406 5.20202 5.25857 5.29514 5.35394 5.39523 5.50983 5.57095 5.65651 5.92129 6.04731 6.06542 6.32800 6.60909 6.62140 6.90039 6.96226 8.28679 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.020044 B = 0.005636 C = 0.004858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.619426 B = 4966.805942 C = 5762.824208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.049 4.049 3 C -0.152 4.152 4 C -0.151 4.151 5 C 0.398 3.602 6 O -0.527 6.527 7 C -0.285 4.285 8 C 0.076 3.924 9 C -0.078 4.078 10 C -0.212 4.212 11 C -0.094 4.094 12 C -0.235 4.235 13 C 0.075 3.925 14 C -0.501 4.501 15 H 0.078 0.922 16 C 0.035 3.965 17 N -0.827 5.827 18 Si 0.979 3.021 19 H -0.257 1.257 20 H -0.272 1.272 21 H -0.258 1.258 22 C -0.162 4.162 23 C -0.089 4.089 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.068 0.932 27 H 0.031 0.969 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.107 0.893 31 H 0.118 0.882 32 H 0.088 0.912 33 H 0.125 0.875 34 H 0.128 0.872 35 H 0.099 0.901 36 H 0.286 0.714 37 H 0.099 0.901 38 H 0.105 0.895 39 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.494 4.590 -2.315 14.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.049 4.049 3 C -0.209 4.209 4 C -0.188 4.188 5 C 0.284 3.716 6 O -0.411 6.411 7 C -0.304 4.304 8 C 0.075 3.925 9 C -0.078 4.078 10 C -0.231 4.231 11 C -0.112 4.112 12 C -0.255 4.255 13 C 0.072 3.928 14 C -0.530 4.530 15 H 0.096 0.904 16 C -0.179 4.179 17 N -0.453 5.453 18 Si 0.800 3.200 19 H -0.181 1.181 20 H -0.196 1.196 21 H -0.182 1.182 22 C -0.181 4.181 23 C -0.126 4.126 24 H 0.090 0.910 25 H 0.090 0.910 26 H 0.087 0.913 27 H 0.051 0.949 28 H 0.090 0.910 29 H 0.093 0.907 30 H 0.126 0.874 31 H 0.135 0.865 32 H 0.107 0.893 33 H 0.143 0.857 34 H 0.146 0.854 35 H 0.117 0.883 36 H 0.096 0.904 37 H 0.117 0.883 38 H 0.123 0.877 39 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -13.096 4.512 -3.067 14.187 hybrid contribution 1.358 -0.885 0.241 1.639 sum -11.738 3.627 -2.826 12.606 Atomic orbital electron populations 1.21805 0.90622 1.03241 1.03386 1.20589 0.97938 0.94912 0.91469 1.22024 1.00180 0.95319 1.03403 1.22259 0.91015 1.04432 1.01065 1.21370 0.93264 0.69591 0.87385 1.90521 1.71366 1.41022 1.38153 1.21966 1.00181 1.13818 0.94456 1.21610 0.96631 0.83015 0.91223 1.19030 0.98802 0.95746 0.94249 1.20753 1.07725 0.98564 0.96073 1.20843 0.96500 0.97347 0.96502 1.21319 1.07005 0.94999 1.02183 1.17906 0.90357 0.92489 0.92005 1.19813 1.30387 1.07946 0.94853 0.90402 1.26754 0.93465 1.03672 0.94051 1.69883 1.34951 1.37587 1.02918 0.85289 0.79497 0.76414 0.78795 1.18148 1.19649 1.18216 1.21434 0.99258 0.97955 0.99477 1.21127 0.87963 1.03140 1.00348 0.91026 0.90955 0.91309 0.94948 0.91000 0.90677 0.87418 0.86451 0.89348 0.85730 0.85441 0.88292 0.90363 0.88292 0.87713 0.88016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.74 8.50 71.98 0.61 -1.13 16 2 C -0.05 -0.98 0.78 -52.08 -0.04 -1.02 16 3 C -0.15 -3.20 8.09 71.98 0.58 -2.62 16 4 C -0.15 -3.52 4.88 29.91 0.15 -3.38 16 5 C 0.40 14.08 6.08 26.29 0.16 14.24 16 6 O -0.53 -22.54 17.82 -3.53 -0.06 -22.60 16 7 C -0.29 -11.33 8.39 22.09 0.19 -11.14 16 8 C 0.08 2.74 4.56 -18.38 -0.08 2.65 16 9 C -0.08 -3.39 5.25 -20.19 -0.11 -3.50 16 10 C -0.21 -8.43 9.65 22.76 0.22 -8.21 16 11 C -0.09 -3.85 10.00 22.17 0.22 -3.63 16 12 C -0.24 -11.23 9.78 22.80 0.22 -11.00 16 13 C 0.07 3.99 5.57 -21.33 -0.12 3.87 16 14 C -0.50 -26.96 9.05 23.47 0.21 -26.75 16 15 H 0.08 4.02 7.91 -2.91 -0.02 3.99 16 16 C 0.04 1.80 5.14 85.25 0.44 2.24 16 17 N -0.83 -44.66 10.96 21.82 0.24 -44.43 16 18 Si 0.98 38.74 29.59 68.60 2.03 40.77 16 19 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 20 H -0.27 -10.37 7.11 99.48 0.71 -9.66 16 21 H -0.26 -9.82 7.11 99.48 0.71 -9.12 16 22 C -0.16 -8.36 8.36 23.07 0.19 -8.17 16 23 C -0.09 -2.23 4.67 29.84 0.14 -2.09 16 24 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.03 0.87 6.12 -2.39 -0.01 0.86 16 28 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 30 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 31 H 0.12 2.34 8.14 -2.38 -0.02 2.32 16 32 H 0.09 4.24 8.04 -2.91 -0.02 4.21 16 33 H 0.12 4.09 8.06 -2.91 -0.02 4.07 16 34 H 0.13 4.26 8.06 -2.91 -0.02 4.24 16 35 H 0.10 4.46 8.06 -2.91 -0.02 4.43 16 36 H 0.29 14.27 8.30 -92.71 -0.77 13.50 16 37 H 0.10 5.51 6.16 -2.91 -0.02 5.49 16 38 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 39 H 0.10 2.31 7.97 -2.38 -0.02 2.29 16 Total: -1.00 -65.14 322.24 6.22 -58.92 By element: Atomic # 1 Polarization: 25.96 SS G_CDS: 1.03 Total: 26.98 kcal Atomic # 6 Polarization: -62.63 SS G_CDS: 2.98 Total: -59.65 kcal Atomic # 7 Polarization: -44.66 SS G_CDS: 0.24 Total: -44.43 kcal Atomic # 8 Polarization: -22.54 SS G_CDS: -0.06 Total: -22.60 kcal Atomic # 14 Polarization: 38.74 SS G_CDS: 2.03 Total: 40.77 kcal Total: -65.14 6.22 -58.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242315348.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.922 kcal (2) G-P(sol) polarization free energy of solvation -65.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds