Wall clock time and date at job start Mon Mar 30 2020 00:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.56408 * 2 1 4 4 C 1.53177 * 109.56813 * 120.23355 * 2 1 3 5 5 C 1.50696 * 109.08937 * 62.87997 * 4 2 1 6 6 O 1.21475 * 119.74619 * 208.57970 * 5 4 2 7 7 C 1.40572 * 120.51265 * 28.84560 * 5 4 2 8 8 C 1.35358 * 121.55157 * 0.20891 * 7 5 4 9 9 C 1.46453 * 119.44021 * 180.23309 * 8 7 5 10 10 C 1.40546 * 119.93583 * 244.72277 * 9 8 7 11 11 C 1.36026 * 120.07370 * 179.75645 * 10 9 8 12 12 C 1.41112 * 119.92409 * 0.54025 * 11 10 9 13 13 C 1.40718 * 120.06516 * 179.68939 * 12 11 10 14 14 H 1.08005 * 120.00506 * 204.80100 * 13 12 11 15 15 C 1.40381 * 119.99821 * 24.80506 * 13 12 11 16 16 N 1.30570 * 120.00077 * 17.88696 * 15 13 12 17 17 Si 1.86800 * 119.99764 * 197.88650 * 15 13 12 18 18 H 1.48503 * 109.47082 * 60.00005 * 17 15 13 19 19 H 1.48507 * 109.47118 * 179.97438 * 17 15 13 20 20 H 1.48493 * 109.47326 * 300.00032 * 17 15 13 21 21 C 1.41113 * 119.87007 * 359.71985 * 12 11 10 22 22 C 1.36026 * 119.92674 * 359.97438 * 21 12 11 23 23 C 1.50548 * 121.12310 * 0.23332 * 8 7 5 24 24 H 1.09007 * 109.47031 * 299.76259 * 1 2 3 25 25 H 1.09002 * 109.47120 * 59.76219 * 1 2 3 26 26 H 1.09002 * 109.46899 * 179.76434 * 1 2 3 27 27 H 1.08996 * 109.47053 * 180.23878 * 3 2 1 28 28 H 1.09001 * 109.46830 * 300.23580 * 3 2 1 29 29 H 1.09000 * 109.46774 * 60.23538 * 3 2 1 30 30 H 1.09004 * 109.53901 * 302.99151 * 4 2 1 31 31 H 1.09004 * 109.53536 * 182.75664 * 4 2 1 32 32 H 1.07998 * 119.22328 * 180.20097 * 7 5 4 33 33 H 1.08009 * 119.96319 * 0.02562 * 10 9 8 34 34 H 1.07996 * 120.03560 * 180.25433 * 11 10 9 35 35 H 0.96996 * 119.99753 * 179.97438 * 16 15 13 36 36 H 1.07999 * 120.03808 * 179.97438 * 21 12 11 37 37 H 1.08005 * 119.96533 * 180.02562 * 22 21 12 38 38 H 1.08992 * 109.46817 * 210.22212 * 23 8 7 39 39 H 1.08997 * 109.46461 * 90.23003 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0424 1.4417 0.0000 4 6 2.0430 -0.7267 1.2470 5 6 1.5964 -2.1652 1.1978 6 8 1.4179 -2.7765 2.2322 7 6 1.3901 -2.8067 -0.0359 8 6 1.5872 -2.1634 -1.2104 9 6 1.3534 -2.8749 -2.4689 10 6 2.4249 -3.1228 -3.3440 11 6 2.2118 -3.7877 -4.5114 12 6 0.9112 -4.2189 -4.8486 13 6 0.6863 -4.9013 -6.0585 14 1 -0.2923 -4.8827 -6.5152 15 6 1.7338 -5.6064 -6.6719 16 7 2.7949 -5.9291 -5.9829 17 14 1.6095 -6.0830 -8.4737 18 1 1.4687 -4.8580 -9.3012 19 1 2.8370 -6.8146 -8.8781 20 1 0.4243 -6.9549 -8.6746 21 6 -0.1636 -3.9638 -3.9705 22 6 0.0571 -3.3038 -2.8017 23 6 2.0428 -0.7289 -1.2450 24 1 -0.3633 0.5102 0.8922 25 1 -0.3633 0.5175 -0.8879 26 1 -0.3633 -1.0277 -0.0042 27 1 3.1323 1.4400 -0.0043 28 1 1.6764 1.9573 -0.8879 29 1 1.6833 1.9549 0.8921 30 1 1.6381 -0.2496 2.1395 31 1 3.1320 -0.6839 1.2717 32 1 1.0669 -3.8371 -0.0468 33 1 3.4194 -2.7886 -3.0873 34 1 3.0363 -3.9814 -5.1814 35 1 3.5185 -6.4166 -6.4066 36 1 -1.1602 -4.2922 -4.2260 37 1 -0.7650 -3.1086 -2.1289 38 1 1.6485 -0.2441 -2.1381 39 1 3.1320 -0.6941 -1.2636 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242316916.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:54 Heat of formation + Delta-G solvation = -29.222797 kcal Electronic energy + Delta-G solvation = -20008.667580 eV Core-core repulsion = 17072.975483 eV Total energy + Delta-G solvation = -2935.692096 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.136 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.16007 -37.82116 -37.01441 -34.33141 -32.75205 -29.96844 -29.49393 -28.58579 -27.34328 -26.72521 -25.46077 -22.19072 -21.05584 -20.18834 -19.58661 -17.51312 -16.92146 -16.03665 -15.50580 -15.33243 -14.75897 -14.30493 -14.19514 -13.98203 -13.67860 -13.36443 -12.93222 -12.73800 -12.28305 -12.20215 -12.14639 -11.84152 -11.74885 -11.63941 -11.33840 -11.23001 -11.02515 -10.87906 -10.77518 -10.64073 -10.40380 -9.90776 -9.60030 -9.31019 -9.11522 -8.60771 -7.71471 -7.40685 -6.98447 -4.52811 1.28075 2.57571 2.95305 2.96996 3.01501 3.05092 3.43981 3.76624 4.38807 4.54221 4.59906 4.79913 4.98199 5.27739 5.40976 5.50346 5.52092 5.58789 5.63000 5.73006 5.78349 5.83431 5.86556 6.05053 6.12019 6.14717 6.16784 6.20957 6.33787 6.58530 6.69214 6.82136 6.85548 6.97338 7.11925 7.16858 7.45852 7.73726 7.87708 7.91391 8.02720 8.09892 8.43568 8.67018 8.79390 9.93614 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.033699 B = 0.004064 C = 0.003960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.681933 B = 6887.756234 C = 7068.599351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.058 4.058 3 C -0.139 4.139 4 C -0.159 4.159 5 C 0.396 3.604 6 O -0.494 6.494 7 C -0.296 4.296 8 C 0.096 3.904 9 C -0.241 4.241 10 C -0.069 4.069 11 C -0.174 4.174 12 C 0.121 3.879 13 C -0.451 4.451 14 H 0.082 0.918 15 C 0.076 3.924 16 N -0.776 5.776 17 Si 0.911 3.089 18 H -0.261 1.261 19 H -0.276 1.276 20 H -0.263 1.263 21 C -0.233 4.233 22 C -0.054 4.054 23 C -0.094 4.094 24 H 0.054 0.946 25 H 0.060 0.940 26 H 0.062 0.938 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.056 0.944 30 H 0.087 0.913 31 H 0.095 0.905 32 H 0.125 0.875 33 H 0.089 0.911 34 H 0.118 0.882 35 H 0.286 0.714 36 H 0.094 0.906 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.508 10.158 4.499 11.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.058 4.058 3 C -0.197 4.197 4 C -0.197 4.197 5 C 0.280 3.720 6 O -0.376 6.376 7 C -0.315 4.315 8 C 0.095 3.905 9 C -0.242 4.242 10 C -0.087 4.087 11 C -0.193 4.193 12 C 0.118 3.882 13 C -0.478 4.478 14 H 0.100 0.900 15 C -0.145 4.145 16 N -0.399 5.399 17 Si 0.735 3.265 18 H -0.185 1.185 19 H -0.201 1.201 20 H -0.187 1.187 21 C -0.252 4.252 22 C -0.072 4.072 23 C -0.131 4.131 24 H 0.073 0.927 25 H 0.079 0.921 26 H 0.081 0.919 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.106 0.894 31 H 0.113 0.887 32 H 0.143 0.857 33 H 0.107 0.893 34 H 0.136 0.864 35 H 0.097 0.903 36 H 0.113 0.887 37 H 0.108 0.892 38 H 0.105 0.895 39 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.648 9.707 5.002 10.939 hybrid contribution 0.053 -0.422 -0.897 0.993 sum 0.702 9.285 4.104 10.176 Atomic orbital electron populations 1.21982 0.94032 1.02812 1.01786 1.20592 0.96299 0.95246 0.93671 1.21845 1.01015 0.94770 1.02034 1.22220 1.02674 0.95475 0.99305 1.20828 0.72988 0.89066 0.89104 1.90538 1.42311 1.67507 1.37233 1.22094 1.14470 1.02251 0.92647 1.21287 0.83450 0.92502 0.93241 1.18110 0.94655 1.14579 0.96890 1.20416 0.95567 0.98572 0.94168 1.20950 0.98140 1.02592 0.97612 1.17714 0.91304 0.87924 0.91209 1.19699 0.97197 1.25942 1.05004 0.90021 1.26075 0.94268 0.93903 1.00248 1.69702 1.06307 1.26380 1.37494 0.86308 0.78868 0.79618 0.81711 1.18544 1.20100 1.18735 1.20647 0.98534 1.09494 0.96547 1.20336 0.94114 0.96615 0.96171 1.21016 1.01291 0.92568 0.98236 0.92706 0.92070 0.91929 0.92442 0.92132 0.92480 0.89449 0.88729 0.85668 0.89326 0.86383 0.90274 0.88739 0.89242 0.89462 0.89602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 8.08 37.16 0.30 -1.49 16 2 C -0.06 -0.67 0.78 -154.35 -0.12 -0.79 16 3 C -0.14 -1.27 8.50 37.16 0.32 -0.95 16 4 C -0.16 -2.02 4.88 -27.79 -0.14 -2.15 16 5 C 0.40 6.65 6.08 -33.43 -0.20 6.45 16 6 O -0.49 -9.88 17.82 5.39 0.10 -9.78 16 7 C -0.30 -5.28 8.40 -39.73 -0.33 -5.61 16 8 C 0.10 1.65 4.54 -102.42 -0.46 1.19 16 9 C -0.24 -4.97 5.26 -104.85 -0.55 -5.52 16 10 C -0.07 -1.50 9.69 -39.51 -0.38 -1.89 16 11 C -0.17 -4.24 8.62 -39.29 -0.34 -4.58 16 12 C 0.12 3.06 5.58 -106.78 -0.60 2.46 16 13 C -0.45 -11.25 9.03 -37.84 -0.34 -11.59 16 14 H 0.08 1.95 7.91 -52.48 -0.42 1.53 16 15 C 0.08 1.79 5.13 -17.28 -0.09 1.70 16 16 N -0.78 -18.89 10.95 55.57 0.61 -18.28 16 17 Si 0.91 17.43 29.60 -169.99 -5.03 12.40 16 18 H -0.26 -4.95 7.11 56.52 0.40 -4.55 16 19 H -0.28 -5.15 7.11 56.52 0.40 -4.75 16 20 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 21 C -0.23 -5.44 9.73 -39.29 -0.38 -5.82 16 22 C -0.05 -1.16 9.64 -39.51 -0.38 -1.54 16 23 C -0.09 -1.28 4.65 -27.90 -0.13 -1.41 16 24 H 0.05 0.58 8.14 -51.92 -0.42 0.16 16 25 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.06 0.88 6.12 -51.93 -0.32 0.56 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.13 2.46 8.04 -52.49 -0.42 2.04 16 33 H 0.09 1.74 8.06 -52.48 -0.42 1.32 16 34 H 0.12 2.97 6.16 -52.49 -0.32 2.64 16 35 H 0.29 6.31 8.29 -40.82 -0.34 5.97 16 36 H 0.09 2.08 8.06 -52.49 -0.42 1.66 16 37 H 0.09 1.74 8.06 -52.48 -0.42 1.31 16 38 H 0.09 1.18 8.10 -51.93 -0.42 0.76 16 39 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 LS Contribution 322.20 15.07 4.86 4.86 Total: -1.00 -26.94 322.20 -8.99 -35.92 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -5.68 Total: 6.44 kcal Atomic # 6 Polarization: -27.72 SS G_CDS: -3.83 Total: -31.55 kcal Atomic # 7 Polarization: -18.89 SS G_CDS: 0.61 Total: -18.28 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.10 Total: -9.78 kcal Atomic # 14 Polarization: 17.43 SS G_CDS: -5.03 Total: 12.40 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -26.94 -8.99 -35.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242316916.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.701 kcal (2) G-P(sol) polarization free energy of solvation -26.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds